Rh2BG039500

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004338
Physical Location & Seq
Reverse (-)
2733370 .. 2736049
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG039500.1

Sequence Viewer

Length: 825 bp
ATGGAGGAGAAAATGAGTGGGTCTGCGGCCGATGCTCTGGACTACAAAGGGTTTCCTGCTGATAAGTCCAGAACTGGTGGTTGGGTTGCCGCAGCGCTTATACTAGGAATTGAAATATGTGAAAGGCTGTCAACTATGGGAATAGCAGTGAACCTGGTGACATACCTAGTTGGGACAATGCATTTGCCAAGCTCAACTTCAGCAAATATTGTCACAGACTTTGCAGGCACATCCTTCCTCCTTTGTTTGCTTGGAGGCTTCCTCGCCGATTCCTTCCTTGGCAGATACAAGACCATTGCAATCTTTGCTTCAATACAGACATTGAGAATTGCAATTGGCCTTGTCCTATCGACTCTTGGAATGGCAGCGGCAGCACTAACCGAGAGGAAGCGGTTATCAGTGGCTAAAGAAATGAGAACTATGAGTACACGTCCTCTGCCTATTAGTGTGTACTTGTTAATCCCACAATTCTTCTTGGTGGGTTCTGGTGAAGCTTTCATCTACACTGGCCAGCTCGATTTCTTTATAACTCAATCACCAAAAGGAATGAAAACTATGAGCACAGGACTCTTCCTGAGCACTTTATCACTAGGCTTCTTTGTCAGTAGCTTCTTGGTTTCAATTGTGAGGAGGTTCACCGGAAGCAAAGATGGGCAAGGATGGCTTGCAGACAATATCAACTATGGAAGGCTTGACTGTTTCTATGGACTTTTGAGCGTTTTAAGTGTCATAAATTTTGTAGCATATCTTGTTTGTGCAAGATGGTACAAGCCAAGAAAACCTACCAAACCATCCAACGGTTCCTCTGCTGAGGATAGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

274

Amino Acids

29.7

Weight (kDa)

9.32

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 108 - 221 4e-22 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
AciI CCGC 4 cut(s) 26, 90, 368, 391
AcoI YGGCCR 2 cut(s) 27, 508
AcsI RAATTY 1 cut(s) 733
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 3 cut(s) 427, 452, 767
AfeI AGCGCT 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 797
AflIII ACRYGT 1 cut(s) 428
AgsI TTSAA 3 cut(s) 113, 312, 621
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 4 cut(s) 64, 96, 181, 213
AluBI AGCT 4 cut(s) 192, 494, 514, 609
AluI AGCT 4 cut(s) 192, 494, 514, 609
Alw21I GWGCWC 2 cut(s) 563, 581
Aor51HI AGCGCT 1 cut(s) 96
AoxI GGCC 3 cut(s) 27, 337, 508
ApeKI GCWGC 3 cut(s) 92, 365, 371
ApoI RAATTY 1 cut(s) 733
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspLEI GCGC 1 cut(s) 97
AsuHPI GGTGA 4 cut(s) 169, 500, 528, 628
BalI TGGCCA 1 cut(s) 510
Bbv12I GWGCWC 2 cut(s) 563, 581
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 3 cut(s) 104, 377, 383
BccI CCATC 4 cut(s) 644, 654, 756, 799
BciT130I CCWGG 1 cut(s) 155
BfaI CTAG 3 cut(s) 104, 167, 590
BfoI RGCGCY 1 cut(s) 98
BisI GCNGC 6 cut(s) 27, 90, 93, 366, 369, 372
BlsI GCNGC 6 cut(s) 28, 91, 94, 367, 370, 373
Bme1390I CCNGG 1 cut(s) 155
BmgBI CACGTC 1 cut(s) 431
BmiI GGNNCC 1 cut(s) 802
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 246, 278
Bpu10I CCTNAGC 2 cut(s) 575, 810
BsaJI CCNNGG 1 cut(s) 277
BsaWI WCCGGW 1 cut(s) 638
Bsc4I CCNNNNNNNGG 1 cut(s) 797
Bse1I ACTGG 2 cut(s) 79, 511
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 277
BseGI GGATG 3 cut(s) 230, 665, 791
BseLI CCNNNNNNNGG 1 cut(s) 797
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 566, 801
BseNI ACTGG 2 cut(s) 79, 511
BseRI GAGGAG 2 cut(s) 20, 643
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 104, 377, 383
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 3 cut(s) 29, 339, 510
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 563, 581
BsiSI CCGG 1 cut(s) 639
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 797
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 3 cut(s) 29, 339, 510
Bsp1286I GDGCHC 2 cut(s) 563, 581
BspACI CCGC 4 cut(s) 26, 90, 368, 391
BspANI GGCC 3 cut(s) 29, 339, 510
BspCNI CTCAG 2 cut(s) 567, 802
BspLI GGNNCC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 2 cut(s) 79, 511
BssECI CCNNGG 1 cut(s) 277
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 698, 800
Bst6I CTCTTC 1 cut(s) 575
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 226, 512, 666
BstDEI CTNAG 2 cut(s) 575, 810
BstF5I GGATG 3 cut(s) 230, 665, 791
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 4 cut(s) 32, 305, 371, 661
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 104, 377, 383
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 3 cut(s) 29, 339, 510
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 3 cut(s) 230, 665, 791
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 3 cut(s) 153, 405, 504
Cac8I GCNNGC 3 cut(s) 226, 512, 666
CfoI GCGC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 3 cut(s) 426, 451, 766
CviQI GTAC 3 cut(s) 426, 451, 766
DdeI CTNAG 2 cut(s) 575, 810
EaeI YGGCCR 2 cut(s) 27, 508
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 575
EarI CTCTTC 1 cut(s) 575
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 277
Eco47III AGCGCT 1 cut(s) 96
Eco52I CGGCCG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 277
FalI AAGNNNNNCTT 4 cut(s) 181, 213, 648, 680
FaqI GGGAC 1 cut(s) 187
Fnu4HI GCNGC 6 cut(s) 27, 90, 93, 366, 369, 372
FokI GGATG 3 cut(s) 217, 672, 778
Fsp4HI GCNGC 6 cut(s) 27, 90, 93, 366, 369, 372
FspBI CTAG 3 cut(s) 104, 167, 590
GlaI GCGC 1 cut(s) 96
GluI GCNGC 6 cut(s) 27, 90, 93, 366, 369, 372
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 3 cut(s) 29, 339, 510
HapII CCGG 1 cut(s) 639
HhaI GCGC 1 cut(s) 97
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 132
HindII GTYRAC 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 3 cut(s) 269, 352, 567
HpaII CCGG 1 cut(s) 639
HphI GGTGA 4 cut(s) 169, 500, 528, 628
Hpy166II GTNNAC 5 cut(s) 132, 151, 428, 451, 636
Hpy188III TCNNGA 3 cut(s) 38, 69, 574
Hpy8I GTNNAC 5 cut(s) 132, 151, 428, 451, 636
HpyAV CCTTC 3 cut(s) 244, 283, 681
HpyCH4III ACNGT 2 cut(s) 698, 800
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 6 cut(s) 181, 224, 299, 332, 668, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 305, 371, 661
HpyF3I CTNAG 2 cut(s) 575, 810
HpySE526I ACGT 1 cut(s) 430
HspAI GCGC 1 cut(s) 95
Lsp1109I GCAGC 3 cut(s) 104, 377, 383
LweI GCATC 1 cut(s) 22
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 3 cut(s) 104, 167, 590
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 157, 211
MboII GAAGA 2 cut(s) 463, 562
MfeI CAATTG 2 cut(s) 333, 621
MhlI GDGCHC 2 cut(s) 563, 581
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 6 cut(s) 108, 327, 333, 467, 621, 733
MluNI TGGCCA 1 cut(s) 510
MlyI GAGTC 2 cut(s) 346, 561
MmeI TCCRAC 1 cut(s) 819
MnlI CCTC 9 cut(s) 248, 248, 272, 378, 444, 621, 624, 805, 814
Mox20I TGGCCA 1 cut(s) 510
Mph1103I ATGCAT 1 cut(s) 183
MscI TGGCCA 1 cut(s) 510
MseI TTAA 2 cut(s) 458, 722
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 639
MspR9I CCNGG 1 cut(s) 155
MunI CAATTG 2 cut(s) 333, 621
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 4 cut(s) 32, 305, 371, 661
NlaIV GGNNCC 1 cut(s) 802
NmuCI GTSAC 2 cut(s) 157, 211
NsiI ATGCAT 1 cut(s) 183
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 6 cut(s) 28, 91, 94, 367, 370, 373
PleI GAGTC 2 cut(s) 346, 561
PpsI GAGTC 2 cut(s) 346, 561
PsiI TTATAA 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 802
PsrI GAACNNNNNNTAC 2 cut(s) 409, 441
RsaI GTAC 3 cut(s) 427, 452, 767
RsaNI GTAC 3 cut(s) 426, 451, 766
SaqAI TTAA 2 cut(s) 458, 722
SatI GCNGC 6 cut(s) 27, 90, 93, 366, 369, 372
SchI GAGTC 2 cut(s) 346, 561
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 2 cut(s) 563, 581
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 1 cut(s) 22
Sse9I AATT 6 cut(s) 108, 327, 333, 467, 621, 733
SsiI CCGC 4 cut(s) 26, 90, 368, 391
SspI AATATT 1 cut(s) 208
SspMI CTAG 3 cut(s) 104, 167, 590
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 698, 800
TaiI ACGT 1 cut(s) 433
TaqI TCGA 2 cut(s) 350, 516
TasI AATT 6 cut(s) 108, 327, 333, 467, 621, 733
TatI WGTACW 2 cut(s) 425, 450
TauI GCSGC 3 cut(s) 29, 92, 371
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 458, 722
Tru9I TTAA 2 cut(s) 458, 722
TscAI CASTG 3 cut(s) 153, 405, 511
TseFI GTSAC 2 cut(s) 157, 211
TseI GCWGC 3 cut(s) 92, 365, 371
Tsp45I GTSAC 2 cut(s) 157, 211
TspDTI ATGAA 2 cut(s) 487, 563
TspRI CASTG 3 cut(s) 153, 405, 511
XapI RAATTY 1 cut(s) 733
XspI CTAG 3 cut(s) 104, 167, 590
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.