RLG00000015970

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004338
Physical Location & Seq
Reverse (-)
2843226 .. 2845754
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015970

Sequence Viewer

Length: 1740 bp
ATGGAGGAGAAAACGAGTTGGACTGCGGCCGATGCTGTGGACTACAAAGGGTCTTCTGCAGATAAGTCCATAACTGGTGGTTGGGTTACTGCCACGCTTATATTAGGAATTGAAATATGTGAAAGGCTATCAACTATGGGAATAGCAGTGAACCTGGTGACGTACCTAGTTGGGACAATGCATTTGCCAAGCTCAACTTCAGCAAATATTGTCACAGACGTTTTAGGCACATCCTTCCTCCTTTGTTTGCTTGGAGGGTTCCTCGCCGATTCCTTCCTTGGCAGATACAAGACCATTGCAATCTTTGCTTCAATACAGACATTGGGCACTGCTGCATTAGCAATAACAGTAAAATTGCCGCAGCTGCGCCCACCTCATTGTGGTATTACTGCTGCCAACAACAACTGCAAACAAGCCAATAAGCTCCAAATGGGAATTCTTTACTTGGCTTTATATATAATTGCATTAGGGACTGGTGGGTTGAAATCAAGTGTTTCGGGATTTGGAACTGATCAATTTGATGAAAAAGATGACAGAGAGAAAGCGCAGATGGCATATTTCTTCAATAGATTTTTCTTCTTCATTAGCACAGGATCCTTGATGGCAGTCACAGTCCTTGTCTACATACAAGACCAAGTGGACAGAAGCTGGGCCTATGGAATATGTTCCATTTCAATGTTTATAGCAATCTTGCTGTTTTTTTCGGGGACTAAAAGATACAGATATAAGAAAAGCTTGGGAAGTCCCATAGTTCAAATTTTTCAGGTTATTGTGGCTGCTATAAGGAAGAGAAAGATGCCACTTCCATTCGACGTTGCCTTGTTGTATGAGAATTATCCCGAGGCTTCAAGAACTGGTCACACAGATCAGTTCCGTTTCTTGGACAAGGCATCTATTGTGACAGAAGAAGATTCCCAGAGAAATGAACCAGCAGGTTCTGTTCCGAACCCATGGAAGTTATGCTCAGTTACAAGAGTGGAGGAGGTGAAAATGATGGTGAAACTACTTCCGATATGGGCCACAACCATCATCTTTTGGACAACATACGGACAGATGTTGACCTTCTCAGTAGAACAAGCATCCACCATGGAGAGATCCATCGGAAAGTTCCAGATCCCGGCTGGCTCTCTCACGGTCTTCTTTGTGCTAGCCATACTGATCACACTGGCTGTTAATGACCGTCTCATTATGCCTATTTGGAAGAAATGGAAGGGCCAGCCAGGTTTCACCGATCTACAGAGAATTGCAATTGGCCTTGTTCTATCGACTCTTGGAATGGCAGCGGCAGCACTAACCGAGAGGAAGCGGTTATCAGTGGCTAAAGAAATGAGAACTATGAGTGCAGGTTCTCTGCCTATTGGTGTTTTCTTGCTAATCCCACAATTCTTCCTAGTGGGTTCTGGTGAAGCTTTCATCTACACTGGCCAGCTCGATTTCTTTATAACTCAATCACCAAAAGGAATGAAAACTATGAGCACAGGACTCTTCCTGAGCACTTTATCACTAGGCTTCTTTTTCAGTAGCTTCTTGGTTTCAATTGTGAGGAGGTTCACCGGAAGCAAAGATAGGCAAGGATGGCTTGCAGACAATATCAACTATGGAAGGCTTGACTGTTTCTATGGACTTTTGAGCGTTTTAAGTGTCATTAATTTTGTAGCATATCTCGTTTGTGCAAGATGGTACAAGCCAAGGAAACCTACCAAACCATCTGACGGTTCCTCTGCTGAGGATAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

580

Amino Acids

64.03

Weight (kDa)

9.34

Isoelectric Point (pI)

32.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 96 - 526 1.7e-102 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1442
Acc36I ACCTGC 2 cut(s) 923, 1334
AccI GTMKAC 1 cut(s) 621
AciI CCGC 4 cut(s) 26, 359, 1283, 1306
AclWI GGATC 4 cut(s) 588, 601, 1089, 1108
AcoI YGGCCR 2 cut(s) 27, 1423
AcsI RAATTY 2 cut(s) 435, 756
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 2 cut(s) 164, 1682
AfiI CCNNNNNNNGG 4 cut(s) 380, 880, 1117, 1712
AgsI TTSAA 8 cut(s) 113, 312, 484, 565, 675, 755, 849, 1536
AjnI CCWGG 2 cut(s) 153, 1219
AjuI GAANNNNNNNTTGG 4 cut(s) 181, 213, 420, 452
AluBI AGCT 8 cut(s) 192, 364, 424, 648, 735, 1409, 1429, 1524
AluI AGCT 8 cut(s) 192, 364, 424, 648, 735, 1409, 1429, 1524
Alw21I GWGCWC 2 cut(s) 1478, 1496
Alw26I GTCTC 1 cut(s) 1187
AlwI GGATC 4 cut(s) 588, 601, 1089, 1108
AlwNI CAGNNNCTG 2 cut(s) 648, 938
Ama87I CYCGRG 1 cut(s) 839
AoxI GGCC 6 cut(s) 27, 651, 1017, 1213, 1252, 1423
ApeKI GCWGC 7 cut(s) 332, 361, 364, 392, 776, 1280, 1286
ApoI RAATTY 2 cut(s) 435, 756
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AseI ATTAAT 1 cut(s) 1647
Asp700I GAANNNNTTC 1 cut(s) 664
AspLEI GCGC 2 cut(s) 369, 547
AspS9I GGNCC 3 cut(s) 651, 1017, 1213
AsuC2I CCSGG 1 cut(s) 1118
AsuHPI GGTGA 7 cut(s) 169, 997, 1009, 1219, 1415, 1443, 1543
AsuNHI GCTAGC 1 cut(s) 1147
AvaI CYCGRG 1 cut(s) 839
BaeGI GKGCMC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 1425
BamHI GGATCC 1 cut(s) 593
BbsI GAAGAC 2 cut(s) 45, 1129
Bbv12I GWGCWC 2 cut(s) 1478, 1496
BbvCI CCTCAGC 1 cut(s) 1725
BbvI GCAGC 7 cut(s) 319, 351, 373, 379, 763, 1292, 1298
BccI CCATC 8 cut(s) 544, 595, 988, 1034, 1106, 1569, 1671, 1714
BciT130I CCWGG 2 cut(s) 155, 1221
BclI TGATCA 2 cut(s) 511, 1158
BcnI CCSGG 1 cut(s) 1118
BcoDI GTCTC 1 cut(s) 1187
BfaI CTAG 4 cut(s) 167, 1148, 1391, 1505
BfmI CTRYAG 2 cut(s) 57, 1235
BfuAI ACCTGC 2 cut(s) 923, 1334
Bme1390I CCNGG 3 cut(s) 155, 1118, 1221
BmeT110I CYCGRG 1 cut(s) 839
BmgT120I GGNCC 3 cut(s) 651, 1017, 1213
BmiI GGNNCC 3 cut(s) 260, 595, 1717
BmrFI CCNGG 3 cut(s) 155, 1118, 1221
BmsI GCATC 4 cut(s) 22, 786, 899, 1088
BmtI GCTAGC 1 cut(s) 1151
BpiI GAAGAC 2 cut(s) 45, 1129
BplI GAGNNNNNCTC 2 cut(s) 246, 278
Bpu10I CCTNAGC 2 cut(s) 1490, 1725
BpuMI CCSGG 1 cut(s) 1118
BsaJI CCNNGG 5 cut(s) 277, 840, 950, 1086, 1688
BsaWI WCCGGW 1 cut(s) 1553
Bsc4I CCNNNNNNNGG 4 cut(s) 380, 880, 1117, 1712
Bse1I ACTGG 5 cut(s) 79, 478, 859, 1170, 1426
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 155, 1221
BseDI CCNNGG 5 cut(s) 277, 840, 950, 1086, 1688
BseGI GGATG 3 cut(s) 230, 1079, 1580
BseLI CCNNNNNNNGG 4 cut(s) 380, 880, 1117, 1712
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 4 cut(s) 978, 1080, 1481, 1716
BseNI ACTGG 5 cut(s) 79, 478, 859, 1170, 1426
BseRI GAGGAG 3 cut(s) 20, 995, 1558
BseSI GKGCMC 1 cut(s) 329
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 7 cut(s) 319, 351, 373, 379, 763, 1292, 1298
BseYI CCCAGC 1 cut(s) 648
BsgI GTGCAG 1 cut(s) 1362
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 6 cut(s) 29, 653, 1019, 1215, 1254, 1425
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 1478, 1496
BsiHKCI CYCGRG 1 cut(s) 839
BsiSI CCGG 2 cut(s) 1118, 1554
BslFI GGGAC 4 cut(s) 187, 484, 721, 729
BslI CCNNNNNNNGG 4 cut(s) 380, 880, 1117, 1712
BsmAI GTCTC 1 cut(s) 1187
BsmBI CGTCTC 1 cut(s) 1187
BsmFI GGGAC 4 cut(s) 187, 484, 721, 729
BsnI GGCC 6 cut(s) 29, 653, 1019, 1215, 1254, 1425
BsoBI CYCGRG 1 cut(s) 839
Bsp1286I GDGCHC 3 cut(s) 329, 1478, 1496
Bsp143I GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
Bsp19I CCATGG 2 cut(s) 950, 1086
BspACI CCGC 4 cut(s) 26, 359, 1283, 1306
BspANI GGCC 6 cut(s) 29, 653, 1019, 1215, 1254, 1425
BspCNI CTCAG 4 cut(s) 977, 1079, 1482, 1717
BspLI GGNNCC 3 cut(s) 260, 595, 1717
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 2 cut(s) 923, 1334
BspOI GCTAGC 1 cut(s) 1151
BspPI GGATC 4 cut(s) 588, 601, 1089, 1108
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 5 cut(s) 79, 478, 859, 1170, 1426
BssECI CCNNGG 5 cut(s) 277, 840, 950, 1086, 1688
BssMI GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
BssT1I CCWWGG 4 cut(s) 277, 950, 1086, 1688
Bst2UI CCWGG 2 cut(s) 155, 1221
Bst4CI ACNGT 6 cut(s) 349, 613, 1135, 1181, 1613, 1715
Bst6I CTCTTC 2 cut(s) 782, 1490
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 5 cut(s) 1123, 1149, 1217, 1427, 1581
BstDEI CTNAG 4 cut(s) 964, 1066, 1490, 1725
BstDSI CCRYGG 2 cut(s) 950, 1086
BstF5I GGATG 3 cut(s) 230, 1079, 1580
BstHHI GCGC 2 cut(s) 369, 547
BstKTI GATC 7 cut(s) 514, 596, 868, 1097, 1116, 1161, 1234
BstMAI GTCTC 1 cut(s) 1187
BstMBI GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 7 cut(s) 32, 305, 338, 364, 551, 1286, 1576
BstNI CCWGG 2 cut(s) 155, 1221
BstSCI CCNGG 3 cut(s) 153, 1116, 1219
BstSFI CTRYAG 2 cut(s) 57, 1235
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 7 cut(s) 319, 351, 373, 379, 763, 1292, 1298
BstV2I GAAGAC 2 cut(s) 45, 1129
BstX2I RGATCY 3 cut(s) 593, 1094, 1113
BstYI RGATCY 3 cut(s) 593, 1094, 1113
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 6 cut(s) 29, 653, 1019, 1215, 1254, 1425
BtgI CCRYGG 2 cut(s) 950, 1086
BtsCI GGATG 3 cut(s) 230, 1079, 1580
BtsI GCAGTG 2 cut(s) 153, 327
BtsIMutI CAGTG 5 cut(s) 153, 327, 1163, 1320, 1419
BveI ACCTGC 2 cut(s) 923, 1334
Cac8I GCNNGC 5 cut(s) 1123, 1149, 1217, 1427, 1581
CaiI CAGNNNCTG 2 cut(s) 648, 938
CfoI GCGC 2 cut(s) 369, 547
Cfr13I GGNCC 3 cut(s) 651, 1017, 1213
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 2 cut(s) 163, 1681
CviAII CATG 2 cut(s) 951, 1087
CviQI GTAC 2 cut(s) 163, 1681
DdeI CTNAG 4 cut(s) 964, 1066, 1490, 1725
DpnI GATC 7 cut(s) 513, 595, 867, 1096, 1115, 1160, 1233
DpnII GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
EaeI YGGCCR 2 cut(s) 27, 1423
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 782, 1490
EarI CTCTTC 2 cut(s) 782, 1490
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 4 cut(s) 277, 950, 1086, 1688
Eco52I CGGCCG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 153, 1219
EcoT14I CCWWGG 4 cut(s) 277, 950, 1086, 1688
EcoT22I ATGCAT 1 cut(s) 183
ErhI CCWWGG 4 cut(s) 277, 950, 1086, 1688
Esp3I CGTCTC 1 cut(s) 1187
FaeI CATG 2 cut(s) 954, 1090
FalI AAGNNNNNCTT 6 cut(s) 181, 213, 719, 751, 1563, 1595
FaqI GGGAC 4 cut(s) 187, 484, 721, 729
FatI CATG 2 cut(s) 950, 1086
FbaI TGATCA 2 cut(s) 511, 1158
FblI GTMKAC 1 cut(s) 621
FokI GGATG 3 cut(s) 217, 1066, 1587
FspBI CTAG 4 cut(s) 167, 1148, 1391, 1505
GlaI GCGC 2 cut(s) 368, 546
GsaI CCCAGC 1 cut(s) 652
HaeIII GGCC 6 cut(s) 29, 653, 1019, 1215, 1254, 1425
HapII CCGG 2 cut(s) 1118, 1554
HhaI GCGC 2 cut(s) 369, 547
Hin1II CATG 2 cut(s) 954, 1090
Hin6I GCGC 2 cut(s) 367, 545
HinP1I GCGC 2 cut(s) 367, 545
HincII GTYRAC 1 cut(s) 1059
HindII GTYRAC 1 cut(s) 1059
HindIII AAGCTT 2 cut(s) 733, 1407
HinfI GANTC 4 cut(s) 269, 911, 1267, 1482
HpaII CCGG 2 cut(s) 1118, 1554
HphI GGTGA 7 cut(s) 169, 997, 1009, 1219, 1415, 1443, 1543
Hpy166II GTNNAC 6 cut(s) 40, 151, 622, 640, 1059, 1551
Hpy188I TCNGA 4 cut(s) 945, 1011, 1103, 1711
Hpy188III TCNNGA 5 cut(s) 498, 839, 849, 1111, 1489
Hpy8I GTNNAC 6 cut(s) 40, 151, 622, 640, 1059, 1551
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 5 cut(s) 244, 283, 1072, 1204, 1596
HpyCH4III ACNGT 6 cut(s) 349, 613, 1135, 1181, 1613, 1715
HpyCH4IV ACGT 3 cut(s) 161, 219, 813
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 305, 338, 364, 551, 1286, 1576
HpyF3I CTNAG 4 cut(s) 964, 1066, 1490, 1725
HpySE526I ACGT 3 cut(s) 161, 219, 813
Hsp92II CATG 2 cut(s) 954, 1090
HspAI GCGC 2 cut(s) 367, 545
Ksp22I TGATCA 2 cut(s) 511, 1158
Kzo9I GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 7 cut(s) 319, 351, 373, 379, 763, 1292, 1298
LweI GCATC 4 cut(s) 22, 786, 899, 1088
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 4 cut(s) 167, 1148, 1391, 1505
MaeII ACGT 3 cut(s) 161, 219, 813
MaeIII GTNAC 7 cut(s) 85, 157, 211, 607, 857, 898, 967
MalI GATC 7 cut(s) 513, 595, 867, 1096, 1115, 1160, 1233
MboI GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
MfeI CAATTG 2 cut(s) 1248, 1536
MflI RGATCY 3 cut(s) 593, 1094, 1113
MhlI GDGCHC 3 cut(s) 329, 1478, 1496
MlsI TGGCCA 1 cut(s) 1425
MluNI TGGCCA 1 cut(s) 1425
MlyI GAGTC 2 cut(s) 1261, 1476
Mox20I TGGCCA 1 cut(s) 1425
Mph1103I ATGCAT 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 664
MscI TGGCCA 1 cut(s) 1425
MseI TTAA 4 cut(s) 1173, 1637, 1647, 1738
MslI CAYNNNNRTG 1 cut(s) 674
Msp20I TGGCCA 1 cut(s) 1425
MspA1I CMGCKG 2 cut(s) 364, 1283
MspI CCGG 2 cut(s) 1118, 1554
MspR9I CCNGG 3 cut(s) 155, 1118, 1221
MunI CAATTG 2 cut(s) 1248, 1536
MvaI CCWGG 2 cut(s) 155, 1221
MwoI GCNNNNNNNGC 7 cut(s) 32, 305, 338, 364, 551, 1286, 1576
NciI CCSGG 1 cut(s) 1118
NcoI CCATGG 2 cut(s) 950, 1086
NdeII GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
NheI GCTAGC 1 cut(s) 1147
NlaIII CATG 2 cut(s) 954, 1090
NlaIV GGNNCC 3 cut(s) 260, 595, 1717
NmuCI GTSAC 5 cut(s) 157, 211, 607, 857, 898
NsiI ATGCAT 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 664
PfeI GAWTC 2 cut(s) 269, 911
PleI GAGTC 2 cut(s) 1261, 1476
PpsI GAGTC 2 cut(s) 1261, 1476
PshBI ATTAAT 1 cut(s) 1647
PsiI TTATAA 1 cut(s) 1442
Psp6I CCWGG 2 cut(s) 153, 1219
PspFI CCCAGC 1 cut(s) 648
PspGI CCWGG 2 cut(s) 153, 1219
PspN4I GGNNCC 3 cut(s) 260, 595, 1717
PspPI GGNCC 3 cut(s) 651, 1017, 1213
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 2 cut(s) 648, 938
PsuI RGATCY 3 cut(s) 593, 1094, 1113
PvuII CAGCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 164, 1682
RsaNI GTAC 2 cut(s) 163, 1681
RseI CAYNNNNRTG 1 cut(s) 674
SaqAI TTAA 4 cut(s) 1173, 1637, 1647, 1738
Sau3AI GATC 7 cut(s) 511, 593, 865, 1094, 1113, 1158, 1231
Sau96I GGNCC 3 cut(s) 651, 1017, 1213
SchI GAGTC 2 cut(s) 1261, 1476
ScrFI CCNGG 3 cut(s) 155, 1118, 1221
SduI GDGCHC 3 cut(s) 329, 1478, 1496
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 4 cut(s) 22, 786, 899, 1088
SfcI CTRYAG 2 cut(s) 57, 1235
SmiMI CAYNNNNRTG 1 cut(s) 674
SsiI CCGC 4 cut(s) 26, 359, 1283, 1306
SspI AATATT 1 cut(s) 208
SspMI CTAG 4 cut(s) 167, 1148, 1391, 1505
StyD4I CCNGG 3 cut(s) 153, 1116, 1219
StyI CCWWGG 4 cut(s) 277, 950, 1086, 1688
TaaI ACNGT 6 cut(s) 349, 613, 1135, 1181, 1613, 1715
TaiI ACGT 3 cut(s) 164, 222, 816
TaqI TCGA 3 cut(s) 810, 1265, 1431
TauI GCSGC 3 cut(s) 29, 361, 1286
TfiI GAWTC 2 cut(s) 269, 911
Tru1I TTAA 4 cut(s) 1173, 1637, 1647, 1738
Tru9I TTAA 4 cut(s) 1173, 1637, 1647, 1738
TscAI CASTG 5 cut(s) 153, 334, 1170, 1320, 1426
TseFI GTSAC 5 cut(s) 157, 211, 607, 857, 898
TseI GCWGC 7 cut(s) 332, 361, 364, 392, 776, 1280, 1286
Tsp45I GTSAC 5 cut(s) 157, 211, 607, 857, 898
TspDTI ATGAA 5 cut(s) 537, 571, 939, 1402, 1478
TspGWI ACGGA 2 cut(s) 863, 1062
TspRI CASTG 5 cut(s) 153, 334, 1170, 1320, 1426
VspI ATTAAT 1 cut(s) 1647
XapI RAATTY 2 cut(s) 435, 756
XcmI CCANNNNNNNNNTGG 1 cut(s) 1118
XmiI GTMKAC 1 cut(s) 621
XmnI GAANNNNTTC 1 cut(s) 664
XspI CTAG 4 cut(s) 167, 1148, 1391, 1505
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.