pycom02g02740

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0004338
Physical Location & Seq
Reverse (-)
1734918 .. 1735388
471 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g02740.1

Sequence Viewer

Length: 471 bp
ATGATAAGACTCCCTTCTTTCTGCTTGCAATGCAACCATACAGGTTTCACCCATCTGCAGAAAATGGCAATAGGGCTTGTGTTAGCAACTTTTGGGATGAGAGCAGCACAATGTGCGAGGAAGAGGTTGGCCGTGGCGAAAGCCAACGGAGGATTGAATCCTCTGCCTATTAGGGTTTTCTTCTTGCTCCCACAGTTCTTGCTCGTGGGTTATGGTAATGCTTTCATGCCCACCGGGCAGCTTGATTTCTTCATAACGGAATCGCCCACGGGGGTGAAAACTATGAGGACAGGCCTCTTCCTCGGTACCTTATCCTTCGGTTTCTTCTTCAGTAGCCTCCGGGTTTGGATTGTGAATAAGGTGACAGGAGGCAAAAATGGCGGATGGCTTGCAAAAACCATAAATCAGGGCAGGCTCGATTGTTTCTACGGACTTTTGACCATTCTCGTTGTCGGAGAGTTCGAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

157

Amino Acids

17.16

Weight (kDa)

10.13

Isoelectric Point (pI)

32.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 14 - 123 8.5e-18 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 305
AccB1I GGYRCC 1 cut(s) 305
AciI CCGC 1 cut(s) 381
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 465
AcuI CTGAAG 1 cut(s) 313
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 1 cut(s) 307
AgsI TTSAA 1 cut(s) 157
AleI CACNNNNGTG 1 cut(s) 272
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
AoxI GGCC 2 cut(s) 129, 292
ApeKI GCWGC 2 cut(s) 104, 238
ApoI RAATTY 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 305
AsuC2I CCSGG 2 cut(s) 235, 341
AsuHPI GGTGA 3 cut(s) 40, 286, 373
AsuII TTCGAA 1 cut(s) 462
BanI GGYRCC 1 cut(s) 305
BauI CACGAG 1 cut(s) 203
BbvI GCAGC 2 cut(s) 116, 250
BccI CCATC 2 cut(s) 60, 378
BceAI ACGGC 1 cut(s) 116
BcnI CCSGG 2 cut(s) 235, 341
BfmI CTRYAG 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 235
BisI GCNGC 2 cut(s) 105, 239
BlsI GCNGC 2 cut(s) 106, 240
Bme1390I CCNGG 2 cut(s) 235, 341
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 2 cut(s) 235, 341
Bpu14I TTCGAA 1 cut(s) 462
BpuMI CCSGG 2 cut(s) 235, 341
BsaJI CCNNGG 3 cut(s) 132, 267, 301
Bse3DI GCAATG 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 132, 267, 301
BseGI GGATG 2 cut(s) 102, 389
BseMI GCAATG 1 cut(s) 35
BseXI GCAGC 2 cut(s) 116, 250
BshFI GGCC 2 cut(s) 131, 294
BshNI GGYRCC 1 cut(s) 305
BsiSI CCGG 2 cut(s) 234, 340
BsnI GGCC 2 cut(s) 131, 294
Bsp119I TTCGAA 1 cut(s) 462
BspACI CCGC 1 cut(s) 381
BspANI GGCC 2 cut(s) 131, 294
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 132, 267, 301
BssSI CACGAG 1 cut(s) 203
Bst2BI CACGAG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 116, 302
BstAPI GCANNNNNTGC 1 cut(s) 113
BstBI TTCGAA 1 cut(s) 462
BstC8I GCNNGC 3 cut(s) 26, 390, 413
BstDSI CCRYGG 2 cut(s) 132, 267
BstF5I GGATG 2 cut(s) 102, 389
BstMWI GCNNNNNNNGC 4 cut(s) 30, 113, 235, 378
BstSCI CCNGG 2 cut(s) 233, 339
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 116, 250
BsuRI GGCC 2 cut(s) 131, 294
BtgI CCRYGG 2 cut(s) 132, 267
BtsCI GGATG 2 cut(s) 102, 389
Cac8I GCNNGC 3 cut(s) 26, 390, 413
Csp6I GTAC 1 cut(s) 306
CspCI CAANNNNNGTGG 2 cut(s) 180, 215
CviAII CATG 1 cut(s) 226
CviJI RGCY 8 cut(s) 76, 131, 143, 241, 294, 336, 388, 415
CviKI_1 RGCY 8 cut(s) 76, 131, 143, 241, 294, 336, 388, 415
CviQI GTAC 1 cut(s) 306
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 116, 302
EarI CTCTTC 2 cut(s) 116, 302
EciI GGCGGA 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 313
FaeI CATG 1 cut(s) 229
FaiI YATR 6 cut(s) 39, 213, 227, 254, 284, 401
FalI AAGNNNNNCTT 1 cut(s) 30
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 105, 239
FokI GGATG 2 cut(s) 109, 396
Fsp4HI GCNGC 2 cut(s) 105, 239
GluI GCNGC 2 cut(s) 105, 239
HaeIII GGCC 2 cut(s) 131, 294
HapII CCGG 2 cut(s) 234, 340
Hin1II CATG 1 cut(s) 229
HinfI GANTC 3 cut(s) 9, 157, 260
HpaII CCGG 2 cut(s) 234, 340
HphI GGTGA 3 cut(s) 40, 286, 373
Hpy188I TCNGA 1 cut(s) 455
HpyAV CCTTC 2 cut(s) 24, 325
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 4 cut(s) 28, 33, 58, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 113, 235, 378
Hsp92II CATG 1 cut(s) 229
KpnI GGTACC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 7 cut(s) 27, 247, 276, 351, 353, 392, 397
Lsp1109I GCAGC 2 cut(s) 116, 250
MaeIII GTNAC 1 cut(s) 361
MboII GAAGA 6 cut(s) 133, 172, 241, 289, 316, 319
MluCI AATT 1 cut(s) 465
MlyI GAGTC 1 cut(s) 3
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 9 cut(s) 111, 117, 143, 171, 279, 305, 311, 347, 362
MslI CAYNNNNRTG 1 cut(s) 272
MspI CCGG 2 cut(s) 234, 340
MspR9I CCNGG 2 cut(s) 235, 341
MwoI GCNNNNNNNGC 4 cut(s) 30, 113, 235, 378
NciI CCSGG 2 cut(s) 235, 341
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 361
NspV TTCGAA 1 cut(s) 462
OliI CACNNNNGTG 1 cut(s) 272
PceI AGGCCT 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 2 cut(s) 157, 260
PkrI GCNGC 2 cut(s) 106, 240
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
PspN4I GGNNCC 1 cut(s) 307
PstI CTGCAG 1 cut(s) 60
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
RseI CAYNNNNRTG 1 cut(s) 272
SatI GCNGC 2 cut(s) 105, 239
SchI GAGTC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 235, 341
SetI ASST 5 cut(s) 46, 128, 243, 311, 363
SfcI CTRYAG 1 cut(s) 56
SfuI TTCGAA 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 272
Sse9I AATT 1 cut(s) 465
SseBI AGGCCT 1 cut(s) 294
SsiI CCGC 1 cut(s) 381
StuI AGGCCT 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 233, 339
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 417, 462
TasI AATT 1 cut(s) 465
TfiI GAWTC 2 cut(s) 157, 260
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 104, 238
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 214, 241
TspGWI ACGGA 3 cut(s) 162, 272, 444
XapI RAATTY 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.