Rh2DG039900

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004338
Physical Location & Seq
Reverse (-)
2775702 .. 2778390
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG039900.1

Sequence Viewer

Length: 1323 bp
ATGGAGGAGAAAATGAGTGGGTATGTGGCCGATGCTCTGGACTACAAAGGGTTTCCTGCTGATAAGTCCAGAACTGGTGGTTGGGTTGCCGCGGCACTTATACTAGGAATTGAAATATGTGAAAGGCTATCAACTATGGGAATAGCAGTGAACCTGGTGACATACCTAGTTGGGACAATGCATTTGCCAAGCTCAACTTCAGCAAATATTGTCACAGACTTTGCAGGCACATCCTTCCTCCTTTGTTTGCTAGGAGGCTTCCTCGCCGATTCCTTCCTTGGCAGATACAAGACCATTGCAATCTTTGCTTCAATACAGACATTGGGCATAATTGCATTAGCAATATCAGTTATTGTGGCTGCTGTAAGGAAGAGAAAGATGCCACTTCCATTCGACGTTGCCTTGTTGTTTGAGAATTATCCCGAGGCTTCAAGAATTGGGCACACTGATCAGTTCCGTTTCTTGGACAAGGCAGCTATTGTGGCAGAAGAAGATTTTGCGAAAAATGCACCTGCAGGTTCTGTTCCGAACCCATGGAATTTATGCTCAGTTACAAGAGTGGAGGAGGTCAAAATGATGGTGAAACTACTTCCGATATGGTCCACAACCATCATGTTTTGGACAGCATACGCACAGATGCTCACCTTCTCAGTAGAACAAGCATCCACCATGGAGAGATCCATTGGAAAGTTTCAAATCCCGGCTGGCTCTCTCACAGTCTTCTTTGTGTTAGCCATATTGATCACATTGGCTGTAAATGACCGTCTCATTATGCCTATTTGGAAGAAATGGAAGGGCCAGCCAGGTTTCACCAATCTACAGAGAATTGCAATTGGCCTTGTCCTATCGACTCTTGGAATGGCAGCAGCAGCACTAACCGAGAGGAAGCGGTTATCAGTGGCTAAAGAAATGAGAACTATGAGTACAGTTCCTCTGCCTATTAGTGTGTACTTGTTAATCCCACAATTCTTCTTGGTGGGTTCTGGTGAAGCTTTCATCTACACTGGCCAGCTCGATTTCTTTATAACTCAATCACCAAAAGGAATGAAAACTATGAGCACAGGACTCTTCCTGAGCACTTTATCACTAGGCTTCTTTGTCAGTAGCTTCTTGGTTTCAATTGTGAGGAGGTTCACCGGAAGCAAAGATGGGCAAGGATGGCTTGCAGACAATATCAACTATGGAAGGCTTGACTGTTTCTATGGACTTTTGAGCGTTTTAAGTATCATAAATTTTGTAGCATATCTTGTTTGTGCAAGATGGTACAAGCCAAGAAAACCTACCAAACCATCCAACGGTTCCTCAGCTGAGGATAGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

440

Amino Acids

48.35

Weight (kDa)

9.32

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 145 - 387 1.5e-53 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1025
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 2 cut(s) 506, 520
AccII CGCG 1 cut(s) 92
AciI CCGC 3 cut(s) 90, 92, 889
AclWI GGATC 1 cut(s) 672
AcoI YGGCCR 2 cut(s) 27, 1006
AcsI RAATTY 2 cut(s) 538, 1231
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 3 cut(s) 925, 950, 1265
AfiI CCNNNNNNNGG 2 cut(s) 463, 1295
AgsI TTSAA 5 cut(s) 113, 312, 432, 695, 1119
AjnI CCWGG 2 cut(s) 153, 802
AjuI GAANNNNNNNTTGG 4 cut(s) 64, 96, 181, 213
AluBI AGCT 6 cut(s) 192, 476, 992, 1012, 1107, 1307
AluI AGCT 6 cut(s) 192, 476, 992, 1012, 1107, 1307
Alw21I GWGCWC 2 cut(s) 1061, 1079
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 1 cut(s) 672
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 4 cut(s) 27, 796, 835, 1006
ApeKI GCWGC 5 cut(s) 359, 473, 863, 866, 869
ApoI RAATTY 2 cut(s) 538, 1231
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspS9I GGNCC 2 cut(s) 600, 796
AsuC2I CCSGG 1 cut(s) 701
AsuHPI GGTGA 7 cut(s) 169, 592, 634, 802, 998, 1026, 1126
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 444
BalI TGGCCA 1 cut(s) 1008
BbsI GAAGAC 1 cut(s) 712
Bbv12I GWGCWC 2 cut(s) 1061, 1079
BbvCI CCTCAGC 2 cut(s) 1303, 1308
BbvI GCAGC 5 cut(s) 346, 485, 875, 878, 881
BccI CCATC 6 cut(s) 571, 617, 1142, 1152, 1254, 1297
BciT130I CCWGG 2 cut(s) 155, 804
BclI TGATCA 2 cut(s) 448, 741
BcnI CCSGG 1 cut(s) 701
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 4 cut(s) 104, 167, 251, 1088
BfmI CTRYAG 2 cut(s) 513, 818
BfuAI ACCTGC 2 cut(s) 506, 520
BisI GCNGC 7 cut(s) 90, 93, 360, 474, 864, 867, 870
BlsI GCNGC 7 cut(s) 91, 94, 361, 475, 865, 868, 871
Bme1390I CCNGG 3 cut(s) 155, 701, 804
Bme18I GGWCC 1 cut(s) 600
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 600, 796
BmiI GGNNCC 1 cut(s) 1300
BmrFI CCNGG 3 cut(s) 155, 701, 804
BmsI GCATC 4 cut(s) 22, 369, 627, 671
BpiI GAAGAC 1 cut(s) 712
BplI GAGNNNNNCTC 2 cut(s) 246, 278
Bpu10I CCTNAGC 3 cut(s) 1073, 1303, 1308
BpuMI CCSGG 1 cut(s) 701
BsaJI CCNNGG 5 cut(s) 90, 277, 423, 533, 669
BsaWI WCCGGW 1 cut(s) 1136
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 1295
Bse1I ACTGG 2 cut(s) 79, 1009
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 155, 804
BseDI CCNNGG 5 cut(s) 90, 277, 423, 533, 669
BseGI GGATG 4 cut(s) 230, 662, 1163, 1289
BseLI CCNNNNNNNGG 2 cut(s) 463, 1295
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 5 cut(s) 561, 663, 1064, 1299, 1317
BseNI ACTGG 2 cut(s) 79, 1009
BseRI GAGGAG 3 cut(s) 20, 578, 1141
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 5 cut(s) 346, 485, 875, 878, 881
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 4 cut(s) 29, 798, 837, 1008
BsiHKAI GWGCWC 2 cut(s) 1061, 1079
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 2 cut(s) 701, 1137
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 463, 1295
BsmAI GTCTC 1 cut(s) 770
BsmBI CGTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 4 cut(s) 29, 798, 837, 1008
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 3 cut(s) 444, 1061, 1079
Bsp143I GATC 3 cut(s) 448, 677, 741
Bsp19I CCATGG 2 cut(s) 533, 669
BspACI CCGC 3 cut(s) 90, 92, 889
BspANI GGCC 4 cut(s) 29, 798, 837, 1008
BspCNI CTCAG 5 cut(s) 560, 662, 1065, 1300, 1316
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 1 cut(s) 1300
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 2 cut(s) 506, 520
BspPI GGATC 1 cut(s) 672
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 2 cut(s) 79, 1009
BssECI CCNNGG 5 cut(s) 90, 277, 423, 533, 669
BssMI GATC 3 cut(s) 448, 677, 741
BssT1I CCWWGG 3 cut(s) 277, 533, 669
Bst2UI CCWGG 2 cut(s) 155, 804
Bst4CI ACNGT 5 cut(s) 718, 764, 928, 1196, 1298
Bst6I CTCTTC 2 cut(s) 365, 1073
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 5 cut(s) 226, 706, 800, 1010, 1164
BstDEI CTNAG 5 cut(s) 547, 649, 1073, 1303, 1308
BstDSI CCRYGG 3 cut(s) 90, 533, 669
BstF5I GGATG 4 cut(s) 230, 662, 1163, 1289
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 3 cut(s) 451, 680, 744
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 3 cut(s) 448, 677, 741
BstMWI GCNNNNNNNGC 5 cut(s) 305, 482, 506, 869, 1159
BstNI CCWGG 2 cut(s) 155, 804
BstSCI CCNGG 3 cut(s) 153, 699, 802
BstSFI CTRYAG 2 cut(s) 513, 818
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 5 cut(s) 346, 485, 875, 878, 881
BstV2I GAAGAC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 677
BstYI RGATCY 1 cut(s) 677
BsuRI GGCC 4 cut(s) 29, 798, 837, 1008
BtgI CCRYGG 3 cut(s) 90, 533, 669
BtsCI GGATG 4 cut(s) 230, 662, 1163, 1289
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 4 cut(s) 153, 444, 903, 1002
BveI ACCTGC 2 cut(s) 506, 520
Cac8I GCNNGC 5 cut(s) 226, 706, 800, 1010, 1164
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 600, 796
Cfr42I CCGCGG 1 cut(s) 93
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 3 cut(s) 924, 949, 1264
CviAII CATG 3 cut(s) 534, 613, 670
CviQI GTAC 3 cut(s) 924, 949, 1264
DdeI CTNAG 5 cut(s) 547, 649, 1073, 1303, 1308
DpnI GATC 3 cut(s) 450, 679, 743
DpnII GATC 3 cut(s) 448, 677, 741
EaeI YGGCCR 2 cut(s) 27, 1006
Eam1104I CTCTTC 2 cut(s) 365, 1073
EarI CTCTTC 2 cut(s) 365, 1073
Eco130I CCWWGG 3 cut(s) 277, 533, 669
Eco47I GGWCC 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 153, 802
EcoT14I CCWWGG 3 cut(s) 277, 533, 669
EcoT22I ATGCAT 1 cut(s) 183
ErhI CCWWGG 3 cut(s) 277, 533, 669
Esp3I CGTCTC 1 cut(s) 770
FaeI CATG 3 cut(s) 537, 616, 673
FalI AAGNNNNNCTT 4 cut(s) 181, 213, 1146, 1178
FaqI GGGAC 1 cut(s) 187
FatI CATG 3 cut(s) 533, 612, 669
FbaI TGATCA 2 cut(s) 448, 741
Fnu4HI GCNGC 7 cut(s) 90, 93, 360, 474, 864, 867, 870
FokI GGATG 4 cut(s) 217, 649, 1170, 1276
Fsp4HI GCNGC 7 cut(s) 90, 93, 360, 474, 864, 867, 870
FspBI CTAG 4 cut(s) 104, 167, 251, 1088
GluI GCNGC 7 cut(s) 90, 93, 360, 474, 864, 867, 870
HaeIII GGCC 4 cut(s) 29, 798, 837, 1008
HapII CCGG 2 cut(s) 701, 1137
Hin1II CATG 3 cut(s) 537, 616, 673
HindIII AAGCTT 1 cut(s) 990
HinfI GANTC 3 cut(s) 269, 850, 1065
HpaII CCGG 2 cut(s) 701, 1137
HphI GGTGA 7 cut(s) 169, 592, 634, 802, 998, 1026, 1126
Hpy166II GTNNAC 4 cut(s) 151, 603, 949, 1134
Hpy188I TCNGA 2 cut(s) 528, 594
Hpy188III TCNNGA 5 cut(s) 38, 69, 422, 432, 1072
Hpy8I GTNNAC 4 cut(s) 151, 603, 949, 1134
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 5 cut(s) 244, 283, 655, 787, 1179
HpyCH4III ACNGT 5 cut(s) 718, 764, 928, 1196, 1298
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 9 cut(s) 181, 224, 299, 335, 509, 515, 830, 1166, 1256
HpyF10VI GCNNNNNNNGC 5 cut(s) 305, 482, 506, 869, 1159
HpyF3I CTNAG 5 cut(s) 547, 649, 1073, 1303, 1308
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 3 cut(s) 537, 616, 673
Ksp22I TGATCA 2 cut(s) 448, 741
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 3 cut(s) 448, 677, 741
Lsp1109I GCAGC 5 cut(s) 346, 485, 875, 878, 881
LweI GCATC 4 cut(s) 22, 369, 627, 671
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 4 cut(s) 104, 167, 251, 1088
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 3 cut(s) 157, 211, 550
MalI GATC 3 cut(s) 450, 679, 743
MboI GATC 3 cut(s) 448, 677, 741
MboII GAAGA 7 cut(s) 382, 500, 503, 712, 796, 961, 1060
MfeI CAATTG 2 cut(s) 831, 1119
MflI RGATCY 1 cut(s) 677
MhlI GDGCHC 3 cut(s) 444, 1061, 1079
MlsI TGGCCA 1 cut(s) 1008
MluNI TGGCCA 1 cut(s) 1008
MlyI GAGTC 2 cut(s) 844, 1059
MmeI TCCRAC 1 cut(s) 1317
Mox20I TGGCCA 1 cut(s) 1008
Mph1103I ATGCAT 1 cut(s) 183
MscI TGGCCA 1 cut(s) 1008
MseI TTAA 2 cut(s) 956, 1220
Msp20I TGGCCA 1 cut(s) 1008
MspA1I CMGCKG 2 cut(s) 92, 1307
MspI CCGG 2 cut(s) 701, 1137
MspR9I CCNGG 3 cut(s) 155, 701, 804
MunI CAATTG 2 cut(s) 831, 1119
MvaI CCWGG 2 cut(s) 155, 804
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 5 cut(s) 305, 482, 506, 869, 1159
NciI CCSGG 1 cut(s) 701
NcoI CCATGG 2 cut(s) 533, 669
NdeII GATC 3 cut(s) 448, 677, 741
NlaIII CATG 3 cut(s) 537, 616, 673
NlaIV GGNNCC 1 cut(s) 1300
NmuCI GTSAC 2 cut(s) 157, 211
NsiI ATGCAT 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 7 cut(s) 91, 94, 361, 475, 865, 868, 871
PleI GAGTC 2 cut(s) 844, 1059
PpsI GAGTC 2 cut(s) 844, 1059
PsiI TTATAA 1 cut(s) 1025
Psp6I CCWGG 2 cut(s) 153, 802
PspGI CCWGG 2 cut(s) 153, 802
PspN4I GGNNCC 1 cut(s) 1300
PspPI GGNCC 2 cut(s) 600, 796
PsrI GAACNNNNNNTAC 2 cut(s) 907, 939
PstI CTGCAG 1 cut(s) 517
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 1307
RsaI GTAC 3 cut(s) 925, 950, 1265
RsaNI GTAC 3 cut(s) 924, 949, 1264
SacII CCGCGG 1 cut(s) 93
SaqAI TTAA 2 cut(s) 956, 1220
SatI GCNGC 7 cut(s) 90, 93, 360, 474, 864, 867, 870
Sau3AI GATC 3 cut(s) 448, 677, 741
Sau96I GGNCC 2 cut(s) 600, 796
SbfI CCTGCAGG 1 cut(s) 517
SchI GAGTC 2 cut(s) 844, 1059
ScrFI CCNGG 3 cut(s) 155, 701, 804
SdaI CCTGCAGG 1 cut(s) 517
SduI GDGCHC 3 cut(s) 444, 1061, 1079
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 4 cut(s) 22, 369, 627, 671
SfcI CTRYAG 2 cut(s) 513, 818
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 1 cut(s) 600
Sse8387I CCTGCAGG 1 cut(s) 517
SsiI CCGC 3 cut(s) 90, 92, 889
SspI AATATT 1 cut(s) 208
SspMI CTAG 4 cut(s) 104, 167, 251, 1088
StyD4I CCNGG 3 cut(s) 153, 699, 802
StyI CCWWGG 3 cut(s) 277, 533, 669
TaaI ACNGT 5 cut(s) 718, 764, 928, 1196, 1298
TaiI ACGT 1 cut(s) 399
TaqI TCGA 3 cut(s) 393, 848, 1014
TatI WGTACW 2 cut(s) 923, 948
TauI GCSGC 2 cut(s) 92, 95
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 956, 1220
Tru9I TTAA 2 cut(s) 956, 1220
TscAI CASTG 4 cut(s) 153, 451, 903, 1009
TseFI GTSAC 2 cut(s) 157, 211
TseI GCWGC 5 cut(s) 359, 473, 863, 866, 869
Tsp45I GTSAC 2 cut(s) 157, 211
TspDTI ATGAA 2 cut(s) 985, 1061
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 4 cut(s) 153, 451, 903, 1009
VpaK11BI GGWCC 1 cut(s) 600
XapI RAATTY 2 cut(s) 538, 1231
XspI CTAG 4 cut(s) 104, 167, 251, 1088
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.