Rh2CG040300

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004338
Physical Location & Seq
Reverse (-)
3206741 .. 3210327
3587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG040300.1

Sequence Viewer

Length: 1428 bp
ATGTATGTACAGGGCATAATTGCATTAGCAATATCAGTAAAATTGCCACAGCTGCGGCCACCTCATTGTGACATTACTGCTGCCAACAACAACTGCAAACAAGCCAATGACTTCCAAACAGGATTCCTTTACTTGGCTTTATATATAATTGCATTAGGGATTGGTGGGCTGAAATCAAGTGTTTCTGGATTTGGAACTGATCAATTTGATGAAAAAGATGACAAAGAGAAAGCGCAGATGGCATATTTCTTCAATAGATTTTTCTTTTTCATTAGCACTGGAACCTTGATGGCAGTCACAGTCCTTGTCTACATACAAGACAAAGTGGACAGAAGCTGGGCCTATGGAATATGTTCCATTTCAATGTTCATAGCCATCTTGGTGTTTTTTTCGGGGACTAAACGATACAGATATAAGAAAAGCTTGGGAAGTCCCATAGTTCAAATTTTTCAGGTTATTGTGGCTGCTGTAAGGAAGAGAAATATGCCACTTCCATTCGACGTTGCCTTGTTGTTTGAGAATTATCCCGAGGCTTCAAGAATTGGTCACACTGATCAGTTCCGTTTCTTGGACAAGGCAGCTATTGTGGCAGAAGAAGATTTTGCGAAAAATGCACCTGCAGGTTCTGTTCCGAACCCATGGAATTTATGCTCAGTTACAAGAGTGGAGGAGGTGAAAATGATGGTGAAACTACTTCCGATATGGGCCACAACCATCATGTTTTGGACAGCATACGCACAGATGCTCACCTTCTCAGTAGAACAAGCATCCAGCATGGAGAGATCCATTGGAAAGTTTCAAATCCCGGCTGGCTCTCTCACAGTCTTCTTTGTGTTAGCCATATTGATCACATTGGCTGTTAATGACCGTCTCATTATGCCTATTTGGAAGAAATGGAAGGGCCAACCAGGTTTCACCAATCTACAGAGAATTGCAATTGGCCTTGTCCTATCGACTCTTGGAATGGCAGCGGCAGCACTAACCGAGAGGAAGCGGTTATCAGTGGCTAAAGAAATGAGAACTATGAGTACAGGTCCTCTGCCTATTAGTGTGTACTTGTTAATCCCACAATTCTTCTTGGTGGGTTCTGGTGAAGCTTTCATCTACACTGGCCAGCTCGATTTCTTTATAACTCAATCACCAAAAGGAATGAAAACTATGAGCACAGGACTCTTCCTGAGCACTTTATCACTAGGCTTCTTTGTCAGTAGCTTCTTGGTTTCAATTGTGAGGAGGTTCACCGGAAGCAAAGATGGGCAAGGATGGCTTGCAGACAATATCAACTATGGAAGGCTTGACTGTTTCTATGGACTTTTGAGCGTTTTAAGTGTCATAAATTTTGTAGCATATCTTGTTTGTGCAAGATGGTACAAGCCAAGAAAACCTACCAAACCATCCAACGGTTCCTCAGCTGAGGATAGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

475

Amino Acids

53.0

Weight (kDa)

9.51

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 422 2.4e-98 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1130
AarI CACCTGC 1 cut(s) 625
Acc36I ACCTGC 2 cut(s) 611, 625
AccI GTMKAC 1 cut(s) 309
AciI CCGC 3 cut(s) 55, 971, 994
AclWI GGATC 1 cut(s) 777
AcoI YGGCCR 2 cut(s) 56, 1111
AcsI RAATTY 3 cut(s) 444, 643, 1336
AfaI GTAC 4 cut(s) 9, 1030, 1055, 1370
AfiI CCNNNNNNNGG 3 cut(s) 133, 568, 1400
AgsI TTSAA 6 cut(s) 253, 363, 443, 537, 800, 1224
AjnI CCWGG 1 cut(s) 907
AluBI AGCT 8 cut(s) 52, 336, 423, 581, 1097, 1117, 1212, 1412
AluI AGCT 8 cut(s) 52, 336, 423, 581, 1097, 1117, 1212, 1412
Alw21I GWGCWC 2 cut(s) 1166, 1184
Alw26I GTCTC 1 cut(s) 875
AlwI GGATC 1 cut(s) 777
AlwNI CAGNNNCTG 2 cut(s) 336, 626
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 6 cut(s) 56, 339, 705, 901, 940, 1111
ApeKI GCWGC 6 cut(s) 52, 80, 464, 578, 968, 974
ApoI RAATTY 3 cut(s) 444, 643, 1336
Asp700I GAANNNNTTC 1 cut(s) 352
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 4 cut(s) 339, 705, 901, 1034
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 7 cut(s) 685, 697, 739, 907, 1103, 1131, 1231
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 1034
BalI TGGCCA 1 cut(s) 1113
BbsI GAAGAC 1 cut(s) 817
Bbv12I GWGCWC 2 cut(s) 1166, 1184
BbvCI CCTCAGC 2 cut(s) 1408, 1413
BbvI GCAGC 6 cut(s) 39, 67, 451, 590, 980, 986
BccI CCATC 9 cut(s) 232, 283, 383, 676, 722, 1247, 1257, 1359, 1402
BciT130I CCWGG 1 cut(s) 909
BclI TGATCA 3 cut(s) 199, 553, 846
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 1 cut(s) 1193
BfmI CTRYAG 2 cut(s) 618, 923
BfuAI ACCTGC 2 cut(s) 611, 625
BisI GCNGC 8 cut(s) 53, 56, 81, 465, 579, 969, 972, 975
BlsI GCNGC 8 cut(s) 54, 57, 82, 466, 580, 970, 973, 976
Bme1390I CCNGG 2 cut(s) 806, 909
Bme18I GGWCC 1 cut(s) 1034
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 4 cut(s) 339, 705, 901, 1034
BmiI GGNNCC 2 cut(s) 283, 1405
BmrFI CCNGG 2 cut(s) 806, 909
BmsI GCATC 2 cut(s) 732, 776
BpiI GAAGAC 1 cut(s) 817
Bpu10I CCTNAGC 3 cut(s) 1178, 1408, 1413
BpuMI CCSGG 1 cut(s) 806
BsaJI CCNNGG 2 cut(s) 528, 638
BsaWI WCCGGW 1 cut(s) 1241
Bsc4I CCNNNNNNNGG 3 cut(s) 133, 568, 1400
Bse1I ACTGG 2 cut(s) 283, 1114
BseBI CCWGG 1 cut(s) 909
BseDI CCNNGG 2 cut(s) 528, 638
BseGI GGATG 3 cut(s) 767, 1268, 1394
BseLI CCNNNNNNNGG 3 cut(s) 133, 568, 1400
BseMII CTCAG 5 cut(s) 666, 768, 1169, 1404, 1422
BseNI ACTGG 2 cut(s) 283, 1114
BseRI GAGGAG 2 cut(s) 683, 1246
BseXI GCAGC 6 cut(s) 39, 67, 451, 590, 980, 986
BseYI CCCAGC 1 cut(s) 336
BshFI GGCC 6 cut(s) 58, 341, 707, 903, 942, 1113
BsiHKAI GWGCWC 2 cut(s) 1166, 1184
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 2 cut(s) 806, 1242
BslFI GGGAC 2 cut(s) 409, 417
BslI CCNNNNNNNGG 3 cut(s) 133, 568, 1400
BsmAI GTCTC 1 cut(s) 875
BsmBI CGTCTC 1 cut(s) 875
BsmFI GGGAC 2 cut(s) 409, 417
BsnI GGCC 6 cut(s) 58, 341, 707, 903, 942, 1113
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 1166, 1184
Bsp1407I TGTACA 1 cut(s) 7
Bsp143I GATC 4 cut(s) 199, 553, 782, 846
Bsp19I CCATGG 1 cut(s) 638
BspACI CCGC 3 cut(s) 55, 971, 994
BspANI GGCC 6 cut(s) 58, 341, 707, 903, 942, 1113
BspCNI CTCAG 5 cut(s) 665, 767, 1170, 1405, 1421
BspLI GGNNCC 2 cut(s) 283, 1405
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 2 cut(s) 611, 625
BspPI GGATC 1 cut(s) 777
BsrGI TGTACA 1 cut(s) 7
BsrI ACTGG 2 cut(s) 283, 1114
BssECI CCNNGG 2 cut(s) 528, 638
BssMI GATC 4 cut(s) 199, 553, 782, 846
BssT1I CCWWGG 1 cut(s) 638
Bst2UI CCWGG 1 cut(s) 909
Bst4CI ACNGT 5 cut(s) 301, 823, 869, 1301, 1403
Bst6I CTCTTC 2 cut(s) 470, 1178
BstAUI TGTACA 1 cut(s) 7
BstC8I GCNNGC 3 cut(s) 811, 1115, 1269
BstDEI CTNAG 5 cut(s) 652, 754, 1178, 1408, 1413
BstDSI CCRYGG 1 cut(s) 638
BstF5I GGATG 3 cut(s) 767, 1268, 1394
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 4 cut(s) 202, 556, 785, 849
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 4 cut(s) 199, 553, 782, 846
BstMWI GCNNNNNNNGC 6 cut(s) 52, 239, 587, 611, 974, 1264
BstNI CCWGG 1 cut(s) 909
BstSCI CCNGG 2 cut(s) 804, 907
BstSFI CTRYAG 2 cut(s) 618, 923
BstV1I GCAGC 6 cut(s) 39, 67, 451, 590, 980, 986
BstV2I GAAGAC 1 cut(s) 817
BstX2I RGATCY 1 cut(s) 782
BstYI RGATCY 1 cut(s) 782
BsuRI GGCC 6 cut(s) 58, 341, 707, 903, 942, 1113
BtgI CCRYGG 1 cut(s) 638
BtsCI GGATG 3 cut(s) 767, 1268, 1394
BtsIMutI CAGTG 4 cut(s) 276, 549, 1008, 1107
BveI ACCTGC 2 cut(s) 611, 625
Cac8I GCNNGC 3 cut(s) 811, 1115, 1269
CaiI CAGNNNCTG 2 cut(s) 336, 626
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 4 cut(s) 339, 705, 901, 1034
CsiI ACCWGGT 1 cut(s) 907
Csp6I GTAC 4 cut(s) 8, 1029, 1054, 1369
CviAII CATG 3 cut(s) 639, 718, 775
CviQI GTAC 4 cut(s) 8, 1029, 1054, 1369
DdeI CTNAG 5 cut(s) 652, 754, 1178, 1408, 1413
DpnI GATC 4 cut(s) 201, 555, 784, 848
DpnII GATC 4 cut(s) 199, 553, 782, 846
EaeI YGGCCR 2 cut(s) 56, 1111
Eam1104I CTCTTC 2 cut(s) 470, 1178
EarI CTCTTC 2 cut(s) 470, 1178
Eco130I CCWWGG 1 cut(s) 638
Eco47I GGWCC 1 cut(s) 1034
Eco88I CYCGRG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 1034
EcoRII CCWGG 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 638
ErhI CCWWGG 1 cut(s) 638
Esp3I CGTCTC 1 cut(s) 875
FaeI CATG 3 cut(s) 642, 721, 778
FalI AAGNNNNNCTT 4 cut(s) 407, 439, 1251, 1283
FaqI GGGAC 2 cut(s) 409, 417
FatI CATG 3 cut(s) 638, 717, 774
FbaI TGATCA 3 cut(s) 199, 553, 846
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 8 cut(s) 53, 56, 81, 465, 579, 969, 972, 975
FokI GGATG 3 cut(s) 754, 1275, 1381
Fsp4HI GCNGC 8 cut(s) 53, 56, 81, 465, 579, 969, 972, 975
FspBI CTAG 1 cut(s) 1193
GlaI GCGC 1 cut(s) 234
GluI GCNGC 8 cut(s) 53, 56, 81, 465, 579, 969, 972, 975
GsaI CCCAGC 1 cut(s) 340
HaeIII GGCC 6 cut(s) 58, 341, 707, 903, 942, 1113
HapII CCGG 2 cut(s) 806, 1242
HhaI GCGC 1 cut(s) 235
Hin1II CATG 3 cut(s) 642, 721, 778
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 2 cut(s) 421, 1095
HinfI GANTC 3 cut(s) 123, 955, 1170
HpaII CCGG 2 cut(s) 806, 1242
HphI GGTGA 7 cut(s) 685, 697, 739, 907, 1103, 1131, 1231
Hpy166II GTNNAC 4 cut(s) 310, 328, 1054, 1239
Hpy188I TCNGA 2 cut(s) 633, 699
Hpy188III TCNNGA 4 cut(s) 186, 527, 537, 1177
Hpy8I GTNNAC 4 cut(s) 310, 328, 1054, 1239
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 3 cut(s) 760, 892, 1284
HpyCH4III ACNGT 5 cut(s) 301, 823, 869, 1301, 1403
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 8 cut(s) 23, 96, 152, 614, 620, 935, 1271, 1361
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 239, 587, 611, 974, 1264
HpyF3I CTNAG 5 cut(s) 652, 754, 1178, 1408, 1413
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 3 cut(s) 642, 721, 778
HspAI GCGC 1 cut(s) 233
Ksp22I TGATCA 3 cut(s) 199, 553, 846
Kzo9I GATC 4 cut(s) 199, 553, 782, 846
Lsp1109I GCAGC 6 cut(s) 39, 67, 451, 590, 980, 986
LweI GCATC 2 cut(s) 732, 776
MabI ACCWGGT 1 cut(s) 907
MaeI CTAG 1 cut(s) 1193
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 4 cut(s) 68, 295, 545, 655
MalI GATC 4 cut(s) 201, 555, 784, 848
MboI GATC 4 cut(s) 199, 553, 782, 846
MboII GAAGA 8 cut(s) 241, 487, 605, 608, 817, 901, 1066, 1165
MfeI CAATTG 2 cut(s) 936, 1224
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 2 cut(s) 1166, 1184
MlsI TGGCCA 1 cut(s) 1113
MluNI TGGCCA 1 cut(s) 1113
MlyI GAGTC 2 cut(s) 949, 1164
MmeI TCCRAC 1 cut(s) 1422
Mox20I TGGCCA 1 cut(s) 1113
MroXI GAANNNNTTC 1 cut(s) 352
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 3 cut(s) 861, 1061, 1325
MslI CAYNNNNRTG 2 cut(s) 362, 380
Msp20I TGGCCA 1 cut(s) 1113
MspA1I CMGCKG 3 cut(s) 52, 971, 1412
MspI CCGG 2 cut(s) 806, 1242
MspR9I CCNGG 2 cut(s) 806, 909
MunI CAATTG 2 cut(s) 936, 1224
MvaI CCWGG 1 cut(s) 909
MwoI GCNNNNNNNGC 6 cut(s) 52, 239, 587, 611, 974, 1264
NciI CCSGG 1 cut(s) 806
NcoI CCATGG 1 cut(s) 638
NdeII GATC 4 cut(s) 199, 553, 782, 846
NlaIII CATG 3 cut(s) 642, 721, 778
NlaIV GGNNCC 2 cut(s) 283, 1405
NmuCI GTSAC 3 cut(s) 68, 295, 545
PaqCI CACCTGC 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 8 cut(s) 54, 57, 82, 466, 580, 970, 973, 976
PleI GAGTC 2 cut(s) 949, 1164
PpsI GAGTC 2 cut(s) 949, 1164
PpuMI RGGWCCY 1 cut(s) 1034
PsiI TTATAA 1 cut(s) 1130
Psp5II RGGWCCY 1 cut(s) 1034
Psp6I CCWGG 1 cut(s) 907
PspFI CCCAGC 1 cut(s) 336
PspGI CCWGG 1 cut(s) 907
PspN4I GGNNCC 2 cut(s) 283, 1405
PspPI GGNCC 4 cut(s) 339, 705, 901, 1034
PspPPI RGGWCCY 1 cut(s) 1034
PsrI GAACNNNNNNTAC 2 cut(s) 1012, 1044
PstI CTGCAG 1 cut(s) 622
PstNI CAGNNNCTG 2 cut(s) 336, 626
PsuI RGATCY 1 cut(s) 782
PvuII CAGCTG 2 cut(s) 52, 1412
RsaI GTAC 4 cut(s) 9, 1030, 1055, 1370
RsaNI GTAC 4 cut(s) 8, 1029, 1054, 1369
RseI CAYNNNNRTG 2 cut(s) 362, 380
SaqAI TTAA 3 cut(s) 861, 1061, 1325
SatI GCNGC 8 cut(s) 53, 56, 81, 465, 579, 969, 972, 975
Sau3AI GATC 4 cut(s) 199, 553, 782, 846
Sau96I GGNCC 4 cut(s) 339, 705, 901, 1034
SbfI CCTGCAGG 1 cut(s) 622
SchI GAGTC 2 cut(s) 949, 1164
ScrFI CCNGG 2 cut(s) 806, 909
SdaI CCTGCAGG 1 cut(s) 622
SduI GDGCHC 2 cut(s) 1166, 1184
SexAI ACCWGGT 1 cut(s) 907
SfaNI GCATC 2 cut(s) 732, 776
SfcI CTRYAG 2 cut(s) 618, 923
SinI GGWCC 1 cut(s) 1034
SmiMI CAYNNNNRTG 2 cut(s) 362, 380
Sse8387I CCTGCAGG 1 cut(s) 622
SsiI CCGC 3 cut(s) 55, 971, 994
SspMI CTAG 1 cut(s) 1193
StyD4I CCNGG 2 cut(s) 804, 907
StyI CCWWGG 1 cut(s) 638
TaaI ACNGT 5 cut(s) 301, 823, 869, 1301, 1403
TaiI ACGT 1 cut(s) 504
TaqI TCGA 3 cut(s) 498, 953, 1119
TatI WGTACW 3 cut(s) 7, 1028, 1053
TauI GCSGC 2 cut(s) 58, 974
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 3 cut(s) 861, 1061, 1325
Tru9I TTAA 3 cut(s) 861, 1061, 1325
TscAI CASTG 4 cut(s) 283, 556, 1008, 1114
TseFI GTSAC 3 cut(s) 68, 295, 545
TseI GCWGC 6 cut(s) 52, 80, 464, 578, 968, 974
Tsp45I GTSAC 3 cut(s) 68, 295, 545
TspDTI ATGAA 5 cut(s) 225, 259, 358, 1090, 1166
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 4 cut(s) 283, 556, 1008, 1114
VpaK11BI GGWCC 1 cut(s) 1034
XapI RAATTY 3 cut(s) 444, 643, 1336
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 1 cut(s) 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.