Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010700.1

Orthogroup ID

OG0004338

Physical Location & Seq

Genomic Coordinates Reverse (-)

13654 .. 14542

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010700.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggacagatccatcagaaagttccagatcccggctggctctctcacggtcttctttgtgctggccatactgatcacactggctgttaatgaccgtctcattatgcctatttggaagaaatggaagggccagccaggtttcaccgatctacagagaattgcaattggccttgttctatcgactcttggaatggcagcggcagcactaaccgagaagaagcgattatcagtggctaaagaaatgagaactatgagtacaggttctctgcctattggtgtgttcttgttaatcccacaattcttcctagtgggttctggtgaagctttcatctacactggccagctcgatttctttatcactcaatcaccaaaaggaatgaaaactatgagtacaggactcttcctgagcactttatcactaggcctctttttcagtagcttcttggtttcgattgtgaagagggtcaccagaagcaaagatgggcaaggatggcttgcagacaatatcaactatggaaggcttgattgtttctatggacttttgagcgttttaagtgtcattaattttgtagcatatctagtttgtgcaagaaggtacaagccaaggaaatctaccacaccatctgacggttcctttgctgaggataggtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

217

Amino Acids

24.04

Weight (kDa)

10.01

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26690 AT2G26690 AT2G26690
fragaria_vesca	FvH4_1g03370
malus_domestica	MD15G1173800.v1.1
prunus_persica	Prupe.7G241900_v2.0.a1 Prupe.7G241900_v2.0.a1 Prupe.7G242000_v2.0.a1
pyrus_communis	pycom02g02740 pycom15g15560 pycom15g15570
rosa_chinensis	RchiOBHm_Chr2g0088601 RchiOBHm_Chr2g0088621
rosa_laevigata	RLG00000015969 RLG00000015970
rosa_multiflora	Rmu_sc0010700.1_g000001 Rmu_sc0010700.1_g000005 Rmu_sc0015442.1_g000005
rosa_roxburghii	Rroxscaffold_2G00152500
rosa_rugosa	Rorug01G0485500
rosa_samantha	Rh2AG040800 Rh2AG040900 Rh2BG039500 Rh2BG039600 Rh2BG039700 Rh2CG040300 Rh2CG040400 Rh2DG039900 Rh2DG040000
rosa_wichuraiana	Rw2G003170 Rw2G003350 Rw2G003370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	2 cut(s)	3, 22
AcoI	YGGCCR	2 cut(s)	63, 337
AfaI	GTAC	3 cut(s)	256, 391, 596
AfiI	CCNNNNNNNGG	2 cut(s)	31, 626
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	3 cut(s)	323, 343, 438
AluI	AGCT	3 cut(s)	323, 343, 438
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	3, 22
AoxI	GGCC	5 cut(s)	63, 127, 166, 337, 421
ApeKI	GCWGC	2 cut(s)	194, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	617, 649
AseI	ATTAAT	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	4 cut(s)	133, 329, 357, 457
BalI	TGGCCA	2 cut(s)	65, 339
BbsI	GAAGAC	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	410
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	206, 212
BccI	CCATC	4 cut(s)	20, 473, 483, 628
BciT130I	CCWGG	1 cut(s)	135
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	3 cut(s)	305, 419, 578
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	195, 198, 201
BlsI	GCNGC	3 cut(s)	196, 199, 202
Bme1390I	CCNGG	2 cut(s)	32, 135
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	32, 135
BpiI	GAAGAC	1 cut(s)	43
Bpu10I	CCTNAGC	2 cut(s)	404, 639
BpuMI	CCSGG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 626
Bse1I	ACTGG	2 cut(s)	84, 340
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	2 cut(s)	31, 626
BseMII	CTCAG	2 cut(s)	395, 630
BseNI	ACTGG	2 cut(s)	84, 340
BseXI	GCAGC	2 cut(s)	206, 212
BshFI	GGCC	5 cut(s)	65, 129, 168, 339, 423
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	31, 626
BsmAI	GTCTC	1 cut(s)	101
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	5 cut(s)	65, 129, 168, 339, 423
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	8, 27, 72, 145
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	5 cut(s)	65, 129, 168, 339, 423
BspCNI	CTCAG	2 cut(s)	396, 631
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	2 cut(s)	3, 22
BsrI	ACTGG	2 cut(s)	84, 340
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	4 cut(s)	8, 27, 72, 145
BssT1I	CCWWGG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	3 cut(s)	49, 95, 629
Bst6I	CTCTTC	2 cut(s)	404, 452
BstC8I	GCNNGC	5 cut(s)	37, 63, 131, 341, 495
BstDEI	CTNAG	2 cut(s)	404, 639
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	494
BstKTI	GATC	4 cut(s)	11, 30, 75, 148
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	4 cut(s)	8, 27, 72, 145
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 490
BstNI	CCWGG	1 cut(s)	135
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	30, 133
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	206, 212
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	8, 27
BstYI	RGATCY	2 cut(s)	8, 27
BsuRI	GGCC	5 cut(s)	65, 129, 168, 339, 423
BtsCI	GGATG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	77, 234, 333
Cac8I	GCNNGC	5 cut(s)	37, 63, 131, 341, 495
Cfr13I	GGNCC	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	255, 390, 595
CviQI	GTAC	3 cut(s)	255, 390, 595
DdeI	CTNAG	2 cut(s)	404, 639
DpnI	GATC	4 cut(s)	10, 29, 74, 147
DpnII	GATC	4 cut(s)	8, 27, 72, 145
EaeI	YGGCCR	2 cut(s)	63, 337
Eam1104I	CTCTTC	2 cut(s)	404, 452
EarI	CTCTTC	2 cut(s)	404, 452
Eco130I	CCWWGG	1 cut(s)	602
Eco147I	AGGCCT	1 cut(s)	423
Eco91I	GGTNACC	1 cut(s)	463
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	602
ErhI	CCWWGG	1 cut(s)	602
Esp3I	CGTCTC	1 cut(s)	101
FaiI	YATR	7 cut(s)	68, 104, 251, 386, 513, 534, 574
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	3 cut(s)	195, 198, 201
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	3 cut(s)	195, 198, 201
FspBI	CTAG	3 cut(s)	305, 419, 578
GluI	GCNGC	3 cut(s)	195, 198, 201
HaeIII	GGCC	5 cut(s)	65, 129, 168, 339, 423
HapII	CCGG	1 cut(s)	32
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	2 cut(s)	181, 396
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	4 cut(s)	133, 329, 357, 457
Hpy188I	TCNGA	2 cut(s)	17, 625
Hpy188III	TCNNGA	2 cut(s)	25, 403
HpyAV	CCTTC	3 cut(s)	118, 510, 585
HpyCH4III	ACNGT	3 cut(s)	49, 95, 629
HpyCH4V	TGCA	3 cut(s)	161, 497, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 490
HpyF3I	CTNAG	2 cut(s)	404, 639
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	8, 27, 72, 145
Lsp1109I	GCAGC	2 cut(s)	206, 212
MaeI	CTAG	3 cut(s)	305, 419, 578
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	4 cut(s)	10, 29, 74, 147
MboI	GATC	4 cut(s)	8, 27, 72, 145
MboII	GAAGA	6 cut(s)	43, 127, 226, 292, 391, 469
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	8, 27
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	2 cut(s)	65, 339
MluCI	AATT	4 cut(s)	156, 162, 296, 562
MluNI	TGGCCA	2 cut(s)	65, 339
MlyI	GAGTC	2 cut(s)	175, 390
MnlI	CCTC	3 cut(s)	434, 453, 634
Mox20I	TGGCCA	2 cut(s)	65, 339
MscI	TGGCCA	2 cut(s)	65, 339
MseI	TTAA	5 cut(s)	87, 287, 551, 561, 652
Msp20I	TGGCCA	2 cut(s)	65, 339
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	32, 135
MunI	CAATTG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	2 cut(s)	200, 490
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	4 cut(s)	8, 27, 72, 145
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	423
PkrI	GCNGC	3 cut(s)	196, 199, 202
PleI	GAGTC	2 cut(s)	175, 390
PpsI	GAGTC	2 cut(s)	175, 390
PshBI	ATTAAT	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	1 cut(s)	127
PsrI	GAACNNNNNNTAC	2 cut(s)	238, 270
PsuI	RGATCY	2 cut(s)	8, 27
RsaI	GTAC	3 cut(s)	256, 391, 596
RsaNI	GTAC	3 cut(s)	255, 390, 595
SaqAI	TTAA	5 cut(s)	87, 287, 551, 561, 652
SatI	GCNGC	3 cut(s)	195, 198, 201
Sau3AI	GATC	4 cut(s)	8, 27, 72, 145
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	2 cut(s)	175, 390
ScrFI	CCNGG	2 cut(s)	32, 135
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	7 cut(s)	139, 262, 325, 345, 440, 596, 650
SfcI	CTRYAG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	156, 162, 296, 562
SseBI	AGGCCT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	3 cut(s)	305, 419, 578
StuI	AGGCCT	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	30, 133
StyI	CCWWGG	1 cut(s)	602
TaaI	ACNGT	3 cut(s)	49, 95, 629
TaqI	TCGA	3 cut(s)	179, 345, 449
TasI	AATT	4 cut(s)	156, 162, 296, 562
TatI	WGTACW	2 cut(s)	254, 389
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	5 cut(s)	87, 287, 551, 561, 652
Tru9I	TTAA	5 cut(s)	87, 287, 551, 561, 652
TscAI	CASTG	3 cut(s)	84, 234, 340
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	194, 200
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	316, 392
TspRI	CASTG	3 cut(s)	84, 234, 340
VspI	ATTAAT	1 cut(s)	561
XcmI	CCANNNNNNNNNTGG	1 cut(s)	32
XspI	CTAG	3 cut(s)	305, 419, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.