Rh2BG039600

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004338
Physical Location & Seq
Reverse (-)
2747487 .. 2750025
2539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG039600.1

Sequence Viewer

Length: 1104 bp
ATGGAGGAGAAAACGAGTTGGACTGCGGCCGATGCTGTGGACTACAAAGGGTCTTCTGCAGATAAGTCCATAACTGGTGGTTGGGTTACTGCCACGCTTATATTAGGAATTGAAATATGTGAAAGGCTATCAACTATGGGAATAGCAGTGAACCTGGTGACATACCTAGTTGGGACAATGCATTTGCCAAGCTCAACTTCAGCAAATATTGTCACAGACTTTTTAGGCACATCCTTCCTCCTTTGTTTGCTTGGAGGCTTCCTCGCCGATTCCTTCCTTGGCAGATACAAGACCATTGCAATCTTTGCTTCAATACAGACATTGGGCACTGCTGCATTAGCAATATCAGTTATTGTGGCTGCTATAAGGAAGAGAAAGATGCCACTTCCATTCGACGTTGCCTTGTTGTATGAGAATTATCCCGAGACTTCAAGAACTGGTCACACAGATCAGTTCCGTTTCTTGGACAAGGCATCTATTGTGGCAGAAGAAGATTCCCAGAGAAATGAACCAGCAGGTTCTGTTCCAAACCCATGGAAGTTATGCTCAGTTACAAGAGTGGAGGAGAAATGGAAGGGCCAGCCAGGTTTCACCGATCTACAGAGAATTGCAATTGGCCTTGTTCTATCGACTCTTGGAATGGCAGCGGCAGCACTAACCGAGAGGAAGCGGTTATCAGTGGCTAAAGAAATGAGAACTATGAGTGCAGGTTCTCTGCCTATTGGTGTGTTCTTGTTAATCCCACAATTCTTCCTAGTAGGTTCTGGTGAAGCTTTCATCTACACTGGCCAGCTCGATTTCTTTATAACTCAATCACCAAAAGGAATGAAAACTATGAGCACAGGACTCTTCCTGAGCACTTTATCACTAGGCTTCTTTGTCAGTAGCTTCTTGGTTTCAATTGTGAGGAGGTTCACCGGAAGCAAAAATGGGCAAGGATGGCTTGCAGACAATATCAACTATGGGAGGCTTGACTGTTTCTATGGACTTTTGAGCGTTTTAAGTGTCATTAATTTTGTAGCATATCTCGTTTGTGCAAGATGGTACAAGCCAAGGAAATCTACCAAACCATCTGACGGTTCCTCTGCTGAGGATAAGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

367

Amino Acids

39.93

Weight (kDa)

8.93

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 195 - 315 7.3e-24 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 806
Acc36I ACCTGC 2 cut(s) 506, 698
AciI CCGC 3 cut(s) 26, 647, 670
AcoI YGGCCR 2 cut(s) 27, 787
AcuI CTGAAG 1 cut(s) 183
AfaI GTAC 1 cut(s) 1046
AfiI CCNNNNNNNGG 2 cut(s) 463, 1076
AgsI TTSAA 4 cut(s) 113, 312, 432, 900
AjnI CCWGG 2 cut(s) 153, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
AluBI AGCT 4 cut(s) 192, 773, 793, 888
AluI AGCT 4 cut(s) 192, 773, 793, 888
Alw21I GWGCWC 2 cut(s) 842, 860
Alw26I GTCTC 1 cut(s) 419
AlwNI CAGNNNCTG 1 cut(s) 521
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 4 cut(s) 27, 577, 616, 787
ApeKI GCWGC 4 cut(s) 332, 359, 644, 650
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AseI ATTAAT 1 cut(s) 1011
AspS9I GGNCC 1 cut(s) 577
AsuHPI GGTGA 5 cut(s) 169, 583, 779, 807, 907
AvaI CYCGRG 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 329
BalI TGGCCA 1 cut(s) 789
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 842, 860
BbvCI CCTCAGC 1 cut(s) 1089
BbvI GCAGC 4 cut(s) 319, 346, 656, 662
BccI CCATC 3 cut(s) 933, 1035, 1078
BciT130I CCWGG 2 cut(s) 155, 585
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 3 cut(s) 167, 755, 869
BfmI CTRYAG 2 cut(s) 57, 599
BfuAI ACCTGC 2 cut(s) 506, 698
BisI GCNGC 6 cut(s) 27, 333, 360, 645, 648, 651
BlsI GCNGC 6 cut(s) 28, 334, 361, 646, 649, 652
Bme1390I CCNGG 2 cut(s) 155, 585
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 1 cut(s) 1081
BmrFI CCNGG 2 cut(s) 155, 585
BmsI GCATC 3 cut(s) 22, 369, 482
BpiI GAAGAC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 246, 278
Bpu10I CCTNAGC 2 cut(s) 854, 1089
BsaJI CCNNGG 3 cut(s) 277, 533, 1052
BsaWI WCCGGW 1 cut(s) 917
Bsc4I CCNNNNNNNGG 2 cut(s) 463, 1076
Bse1I ACTGG 3 cut(s) 79, 442, 790
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 2 cut(s) 155, 585
BseDI CCNNGG 3 cut(s) 277, 533, 1052
BseGI GGATG 2 cut(s) 230, 944
BseLI CCNNNNNNNGG 2 cut(s) 463, 1076
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 3 cut(s) 561, 845, 1080
BseNI ACTGG 3 cut(s) 79, 442, 790
BseRI GAGGAG 3 cut(s) 20, 578, 922
BseSI GKGCMC 1 cut(s) 329
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 4 cut(s) 319, 346, 656, 662
BsgI GTGCAG 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 4 cut(s) 29, 579, 618, 789
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 842, 860
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 918
BslFI GGGAC 1 cut(s) 187
BslI CCNNNNNNNGG 2 cut(s) 463, 1076
BsmAI GTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 4 cut(s) 29, 579, 618, 789
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 3 cut(s) 329, 842, 860
Bsp143I GATC 2 cut(s) 448, 595
Bsp19I CCATGG 1 cut(s) 533
BspACI CCGC 3 cut(s) 26, 647, 670
BspANI GGCC 4 cut(s) 29, 579, 618, 789
BspCNI CTCAG 3 cut(s) 560, 846, 1081
BspLI GGNNCC 1 cut(s) 1081
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 2 cut(s) 506, 698
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 3 cut(s) 79, 442, 790
BssECI CCNNGG 3 cut(s) 277, 533, 1052
BssMI GATC 2 cut(s) 448, 595
BssT1I CCWWGG 3 cut(s) 277, 533, 1052
Bst2UI CCWGG 2 cut(s) 155, 585
Bst4CI ACNGT 2 cut(s) 977, 1079
Bst6I CTCTTC 2 cut(s) 365, 854
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 581, 791, 945
BstDEI CTNAG 3 cut(s) 547, 854, 1089
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 2 cut(s) 230, 944
BstKTI GATC 2 cut(s) 451, 598
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 2 cut(s) 448, 595
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 5 cut(s) 32, 305, 338, 650, 940
BstNI CCWGG 2 cut(s) 155, 585
BstSCI CCNGG 2 cut(s) 153, 583
BstSFI CTRYAG 2 cut(s) 57, 599
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 4 cut(s) 319, 346, 656, 662
BstV2I GAAGAC 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 534
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 4 cut(s) 29, 579, 618, 789
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 2 cut(s) 230, 944
BtsI GCAGTG 2 cut(s) 153, 327
BtsIMutI CAGTG 4 cut(s) 153, 327, 684, 783
BveI ACCTGC 2 cut(s) 506, 698
Cac8I GCNNGC 3 cut(s) 581, 791, 945
CaiI CAGNNNCTG 1 cut(s) 521
Cfr13I GGNCC 1 cut(s) 577
CsiI ACCWGGT 1 cut(s) 153
Csp6I GTAC 1 cut(s) 1045
CviAII CATG 1 cut(s) 534
CviQI GTAC 1 cut(s) 1045
DdeI CTNAG 3 cut(s) 547, 854, 1089
DpnI GATC 2 cut(s) 450, 597
DpnII GATC 2 cut(s) 448, 595
EaeI YGGCCR 2 cut(s) 27, 787
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 365, 854
EarI CTCTTC 2 cut(s) 365, 854
EclXI CGGCCG 1 cut(s) 27
Eco130I CCWWGG 3 cut(s) 277, 533, 1052
Eco52I CGGCCG 1 cut(s) 27
Eco57I CTGAAG 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 153, 583
EcoT14I CCWWGG 3 cut(s) 277, 533, 1052
EcoT22I ATGCAT 1 cut(s) 183
ErhI CCWWGG 3 cut(s) 277, 533, 1052
FaeI CATG 1 cut(s) 537
FalI AAGNNNNNCTT 4 cut(s) 181, 213, 927, 959
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 533
Fnu4HI GCNGC 6 cut(s) 27, 333, 360, 645, 648, 651
FokI GGATG 2 cut(s) 217, 951
Fsp4HI GCNGC 6 cut(s) 27, 333, 360, 645, 648, 651
FspBI CTAG 3 cut(s) 167, 755, 869
GluI GCNGC 6 cut(s) 27, 333, 360, 645, 648, 651
HaeIII GGCC 4 cut(s) 29, 579, 618, 789
HapII CCGG 1 cut(s) 918
Hin1II CATG 1 cut(s) 537
HindIII AAGCTT 1 cut(s) 771
HinfI GANTC 4 cut(s) 269, 494, 631, 846
HpaII CCGG 1 cut(s) 918
HphI GGTGA 5 cut(s) 169, 583, 779, 807, 907
Hpy166II GTNNAC 3 cut(s) 40, 151, 915
Hpy188I TCNGA 1 cut(s) 1075
Hpy188III TCNNGA 3 cut(s) 422, 432, 853
Hpy8I GTNNAC 3 cut(s) 40, 151, 915
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 3 cut(s) 244, 283, 568
HpyCH4III ACNGT 2 cut(s) 977, 1079
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 8 cut(s) 59, 181, 299, 335, 611, 707, 947, 1037
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 305, 338, 650, 940
HpyF3I CTNAG 3 cut(s) 547, 854, 1089
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 537
Kzo9I GATC 2 cut(s) 448, 595
Lsp1109I GCAGC 4 cut(s) 319, 346, 656, 662
LweI GCATC 3 cut(s) 22, 369, 482
MabI ACCWGGT 1 cut(s) 153
MaeI CTAG 3 cut(s) 167, 755, 869
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 5 cut(s) 85, 157, 211, 440, 550
MalI GATC 2 cut(s) 450, 597
MboI GATC 2 cut(s) 448, 595
MboII GAAGA 6 cut(s) 45, 382, 500, 503, 742, 841
MfeI CAATTG 2 cut(s) 612, 900
MhlI GDGCHC 3 cut(s) 329, 842, 860
MlsI TGGCCA 1 cut(s) 789
MluCI AATT 7 cut(s) 108, 415, 606, 612, 746, 900, 1012
MluNI TGGCCA 1 cut(s) 789
MlyI GAGTC 2 cut(s) 625, 840
Mox20I TGGCCA 1 cut(s) 789
Mph1103I ATGCAT 1 cut(s) 183
MscI TGGCCA 1 cut(s) 789
MseI TTAA 4 cut(s) 737, 1001, 1011, 1102
Msp20I TGGCCA 1 cut(s) 789
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 1 cut(s) 918
MspR9I CCNGG 2 cut(s) 155, 585
MunI CAATTG 2 cut(s) 612, 900
MvaI CCWGG 2 cut(s) 155, 585
MwoI GCNNNNNNNGC 5 cut(s) 32, 305, 338, 650, 940
NcoI CCATGG 1 cut(s) 533
NdeII GATC 2 cut(s) 448, 595
NlaIII CATG 1 cut(s) 537
NlaIV GGNNCC 1 cut(s) 1081
NmuCI GTSAC 3 cut(s) 157, 211, 440
NsiI ATGCAT 1 cut(s) 183
PfeI GAWTC 2 cut(s) 269, 494
PkrI GCNGC 6 cut(s) 28, 334, 361, 646, 649, 652
PleI GAGTC 2 cut(s) 625, 840
PpsI GAGTC 2 cut(s) 625, 840
PshBI ATTAAT 1 cut(s) 1011
PsiI TTATAA 1 cut(s) 806
Psp6I CCWGG 2 cut(s) 153, 583
PspGI CCWGG 2 cut(s) 153, 583
PspN4I GGNNCC 1 cut(s) 1081
PspPI GGNCC 1 cut(s) 577
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 1046
RsaNI GTAC 1 cut(s) 1045
SaqAI TTAA 4 cut(s) 737, 1001, 1011, 1102
SatI GCNGC 6 cut(s) 27, 333, 360, 645, 648, 651
Sau3AI GATC 2 cut(s) 448, 595
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 2 cut(s) 625, 840
ScrFI CCNGG 2 cut(s) 155, 585
SduI GDGCHC 3 cut(s) 329, 842, 860
SexAI ACCWGGT 1 cut(s) 153
SfaNI GCATC 3 cut(s) 22, 369, 482
SfcI CTRYAG 2 cut(s) 57, 599
Sse9I AATT 7 cut(s) 108, 415, 606, 612, 746, 900, 1012
SsiI CCGC 3 cut(s) 26, 647, 670
SspI AATATT 1 cut(s) 208
SspMI CTAG 3 cut(s) 167, 755, 869
StyD4I CCNGG 2 cut(s) 153, 583
StyI CCWWGG 3 cut(s) 277, 533, 1052
TaaI ACNGT 2 cut(s) 977, 1079
TaiI ACGT 1 cut(s) 399
TaqI TCGA 3 cut(s) 393, 629, 795
TasI AATT 7 cut(s) 108, 415, 606, 612, 746, 900, 1012
TauI GCSGC 2 cut(s) 29, 650
TfiI GAWTC 2 cut(s) 269, 494
Tru1I TTAA 4 cut(s) 737, 1001, 1011, 1102
Tru9I TTAA 4 cut(s) 737, 1001, 1011, 1102
TscAI CASTG 4 cut(s) 153, 334, 684, 790
TseFI GTSAC 3 cut(s) 157, 211, 440
TseI GCWGC 4 cut(s) 332, 359, 644, 650
Tsp45I GTSAC 3 cut(s) 157, 211, 440
TspDTI ATGAA 3 cut(s) 522, 766, 842
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 4 cut(s) 153, 334, 684, 790
VspI ATTAAT 1 cut(s) 1011
XspI CTAG 3 cut(s) 167, 755, 869
Zsp2I ATGCAT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.