Rh2BG039700

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004338
Physical Location & Seq
Reverse (-)
2764795 .. 2767207
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG039700.1

Sequence Viewer

Length: 813 bp
ATGAGTTGGACTGCAGCCGATGCTGTGGACTACAAAGGGTCTCCTGCAGATAAGTCCAGAACTGGTGGTTGGGTTACGGCCACGCTTATATTAGGAATTGAAATATGTGAAAGGCTATCAACTATGGGAATAGCAGTGAACCTGGTGACATACCTAGTTGGGACAATGCATTTGCCAAGCTCAACTTCAGCAAATATTGTCACAGAATTTTTAGGCACATCCTTCCTCCTTTGTTTGCTTGGAGGCTTCCTCGCCGATTCCTTCCTTGGCAGATACAAGACCATTGCAATCTTTGCTTCAGTACAGACATTGAGAATTGCAATTGGCCTTGTTCTATCGACTCTTGGAATGGCAGCGGCAGCACTAACCGAGAGGAAGCGGTTATCAGTGGCTAAAGAAATGAGAACTATGAGTGCAGATTCTCTGCCTATTGGTGTGTTCTTGTTAATCCCACAATTCTTCCTAGTAGGTTCTGGTGAAGCTTTCATCTACACTGGCCAGCTCGATTTCTTTATAACTCAATCACCAAAAGGAATGAAAACTATGAGCACAGGACTCTTCCTGAGCACTTTATCACTAGGCTTCTTTTTCAGTAGCTTCTTGGTTTCAATTGTGAGGAGGTTCACCGGAAGCAAAGATGGGCAAGGATGGCTTGCAGACAATATCAACTATGGAAGGCTTGACTGTTTTTATGGACTTTTGAGCGTTTTAAGTGTCATTAATTTTGTAGCATATCTCGTTTGTGCAAGATGGTACAAGCCAAGGAAATCTACCAAACCGTCTGACGGTTCCTCTGCTGAGGATAGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0006950 GO:0008150 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0042221 GO:0050896 GO:1901700
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

270

Amino Acids

29.26

Weight (kDa)

9.11

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 104 - 217 3e-21 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
AciI CCGC 2 cut(s) 356, 379
AcoI YGGCCR 2 cut(s) 78, 496
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 2 cut(s) 171, 282
AfaI GTAC 2 cut(s) 303, 755
AfiI CCNNNNNNNGG 1 cut(s) 785
AgsI TTSAA 2 cut(s) 101, 609
AjnI CCWGG 1 cut(s) 141
AjuI GAANNNNNNNTTGG 4 cut(s) 52, 84, 169, 201
AluBI AGCT 4 cut(s) 180, 482, 502, 597
AluI AGCT 4 cut(s) 180, 482, 502, 597
Alw21I GWGCWC 2 cut(s) 551, 569
Alw26I GTCTC 1 cut(s) 45
AoxI GGCC 3 cut(s) 78, 325, 496
ApeKI GCWGC 3 cut(s) 14, 353, 359
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 2 cut(s) 154, 186
AseI ATTAAT 1 cut(s) 720
AsuHPI GGTGA 4 cut(s) 157, 488, 516, 616
BalI TGGCCA 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 551, 569
BbvCI CCTCAGC 1 cut(s) 798
BbvI GCAGC 3 cut(s) 26, 365, 371
BccI CCATC 3 cut(s) 632, 642, 744
BceAI ACGGC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 45
BfaI CTAG 3 cut(s) 155, 464, 578
BfmI CTRYAG 2 cut(s) 12, 45
BisI GCNGC 4 cut(s) 15, 354, 357, 360
BlsI GCNGC 4 cut(s) 16, 355, 358, 361
Bme1390I CCNGG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 790
BmrFI CCNGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 10
BplI GAGNNNNNCTC 2 cut(s) 234, 266
Bpu10I CCTNAGC 2 cut(s) 563, 798
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 2 cut(s) 265, 761
BsaWI WCCGGW 1 cut(s) 626
Bsc4I CCNNNNNNNGG 1 cut(s) 785
Bse1I ACTGG 2 cut(s) 67, 499
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 265, 761
BseGI GGATG 2 cut(s) 218, 653
BseLI CCNNNNNNNGG 1 cut(s) 785
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 554, 789
BseNI ACTGG 2 cut(s) 67, 499
BseRI GAGGAG 1 cut(s) 631
BseXI GCAGC 3 cut(s) 26, 365, 371
BsgI GTGCAG 1 cut(s) 435
BshFI GGCC 3 cut(s) 80, 327, 498
BsiHKAI GWGCWC 2 cut(s) 551, 569
BsiSI CCGG 1 cut(s) 627
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 785
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 175
BsnI GGCC 3 cut(s) 80, 327, 498
Bso31I GGTCTC 1 cut(s) 45
Bsp1286I GDGCHC 2 cut(s) 551, 569
BspACI CCGC 2 cut(s) 356, 379
BspANI GGCC 3 cut(s) 80, 327, 498
BspCNI CTCAG 2 cut(s) 555, 790
BspLI GGNNCC 1 cut(s) 790
BspMAI CTGCAG 2 cut(s) 16, 49
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 67, 499
BssECI CCNNGG 2 cut(s) 265, 761
BssT1I CCWWGG 2 cut(s) 265, 761
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 3 cut(s) 686, 780, 788
Bst6I CTCTTC 1 cut(s) 563
BstAPI GCANNNNNTGC 2 cut(s) 20, 293
BstC8I GCNNGC 2 cut(s) 500, 654
BstDEI CTNAG 2 cut(s) 563, 798
BstF5I GGATG 2 cut(s) 218, 653
BstMAI GTCTC 1 cut(s) 45
BstMWI GCNNNNNNNGC 4 cut(s) 20, 293, 359, 649
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstSFI CTRYAG 2 cut(s) 12, 45
BstV1I GCAGC 3 cut(s) 26, 365, 371
BsuRI GGCC 3 cut(s) 80, 327, 498
BtsCI GGATG 2 cut(s) 218, 653
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 3 cut(s) 141, 393, 492
Cac8I GCNNGC 2 cut(s) 500, 654
CsiI ACCWGGT 1 cut(s) 141
Csp6I GTAC 2 cut(s) 302, 754
CviQI GTAC 2 cut(s) 302, 754
DdeI CTNAG 2 cut(s) 563, 798
EaeI YGGCCR 2 cut(s) 78, 496
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 2 cut(s) 265, 761
Eco31I GGTCTC 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 171, 282
EcoRII CCWGG 1 cut(s) 141
EcoT14I CCWWGG 2 cut(s) 265, 761
EcoT22I ATGCAT 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 265, 761
FalI AAGNNNNNCTT 4 cut(s) 169, 201, 636, 668
FaqI GGGAC 1 cut(s) 175
Fnu4HI GCNGC 4 cut(s) 15, 354, 357, 360
FokI GGATG 2 cut(s) 205, 660
Fsp4HI GCNGC 4 cut(s) 15, 354, 357, 360
FspBI CTAG 3 cut(s) 155, 464, 578
GluI GCNGC 4 cut(s) 15, 354, 357, 360
HaeIII GGCC 3 cut(s) 80, 327, 498
HapII CCGG 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 4 cut(s) 257, 340, 419, 555
HpaII CCGG 1 cut(s) 627
HphI GGTGA 4 cut(s) 157, 488, 516, 616
Hpy166II GTNNAC 3 cut(s) 28, 139, 624
Hpy188I TCNGA 1 cut(s) 784
Hpy188III TCNNGA 2 cut(s) 57, 562
Hpy8I GTNNAC 3 cut(s) 28, 139, 624
HpyAV CCTTC 3 cut(s) 232, 271, 669
HpyCH4III ACNGT 3 cut(s) 686, 780, 788
HpyCH4V TGCA 8 cut(s) 14, 47, 169, 287, 320, 416, 656, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 293, 359, 649
HpyF3I CTNAG 2 cut(s) 563, 798
Lsp1109I GCAGC 3 cut(s) 26, 365, 371
LweI GCATC 1 cut(s) 10
MabI ACCWGGT 1 cut(s) 141
MaeI CTAG 3 cut(s) 155, 464, 578
MaeIII GTNAC 3 cut(s) 73, 145, 199
MboII GAAGA 2 cut(s) 451, 550
MfeI CAATTG 2 cut(s) 321, 609
MhlI GDGCHC 2 cut(s) 551, 569
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 7 cut(s) 96, 206, 315, 321, 455, 609, 721
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 2 cut(s) 334, 549
MnlI CCTC 8 cut(s) 236, 236, 260, 366, 609, 612, 793, 802
Mox20I TGGCCA 1 cut(s) 498
Mph1103I ATGCAT 1 cut(s) 171
MscI TGGCCA 1 cut(s) 498
MseI TTAA 4 cut(s) 446, 710, 720, 811
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 627
MspR9I CCNGG 1 cut(s) 143
MunI CAATTG 2 cut(s) 321, 609
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 20, 293, 359, 649
NlaIV GGNNCC 1 cut(s) 790
NmuCI GTSAC 2 cut(s) 145, 199
NsiI ATGCAT 1 cut(s) 171
PfeI GAWTC 2 cut(s) 257, 419
PkrI GCNGC 4 cut(s) 16, 355, 358, 361
PleI GAGTC 2 cut(s) 334, 549
PpsI GAGTC 2 cut(s) 334, 549
PshBI ATTAAT 1 cut(s) 720
PsiI TTATAA 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 790
PstI CTGCAG 2 cut(s) 16, 49
RsaI GTAC 2 cut(s) 303, 755
RsaNI GTAC 2 cut(s) 302, 754
SaqAI TTAA 4 cut(s) 446, 710, 720, 811
SatI GCNGC 4 cut(s) 15, 354, 357, 360
SchI GAGTC 2 cut(s) 334, 549
ScrFI CCNGG 1 cut(s) 143
SduI GDGCHC 2 cut(s) 551, 569
SetI ASST 9 cut(s) 144, 156, 182, 472, 484, 504, 599, 623, 809
SexAI ACCWGGT 1 cut(s) 141
SfaNI GCATC 1 cut(s) 10
SfcI CTRYAG 2 cut(s) 12, 45
Sse9I AATT 7 cut(s) 96, 206, 315, 321, 455, 609, 721
SsiI CCGC 2 cut(s) 356, 379
SspI AATATT 1 cut(s) 196
SspMI CTAG 3 cut(s) 155, 464, 578
StyD4I CCNGG 1 cut(s) 141
StyI CCWWGG 2 cut(s) 265, 761
TaaI ACNGT 3 cut(s) 686, 780, 788
TaqI TCGA 2 cut(s) 338, 504
TasI AATT 7 cut(s) 96, 206, 315, 321, 455, 609, 721
TatI WGTACW 1 cut(s) 301
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 2 cut(s) 257, 419
Tru1I TTAA 4 cut(s) 446, 710, 720, 811
Tru9I TTAA 4 cut(s) 446, 710, 720, 811
TscAI CASTG 3 cut(s) 141, 393, 499
TseFI GTSAC 2 cut(s) 145, 199
TseI GCWGC 3 cut(s) 14, 353, 359
Tsp45I GTSAC 2 cut(s) 145, 199
TspDTI ATGAA 2 cut(s) 475, 551
TspRI CASTG 3 cut(s) 141, 393, 499
VspI ATTAAT 1 cut(s) 720
XapI RAATTY 1 cut(s) 206
XspI CTAG 3 cut(s) 155, 464, 578
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.