Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0015696

Physical Location & Seq

Genomic Coordinates Forward (+)

30436022 .. 30436276

Gene Structure 255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1252100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGAACCAGATCATGGGAAGCTGTTCATTGGTGGGATTTCCTGGGACACAGATGAGGAACGGCTCAAGGAATATTTCAGGAAGTATGGAGAGGTGGTGGAGGCTGTGATCATGAGGGATCATGCAACTGGTCGTGCTCGTGGATTCGGGTTTGTTGTCTTTGCGGATCCTGCAGTTGCAGAAAGAGTTGTCATGGATAAGCACATGATCGATTGCTGCACAGTCATTGTTAAAAGCTGCACAAAAAACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0008150 GO:0008187 GO:0008266 GO:0009987 GO:0030154 GO:0032502 GO:0032991 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048863 GO:0048864 GO:0048869 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

85

Amino Acids

9.54

Weight (kDa)

5.86

Isoelectric Point (pI)

15.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	7 - 64	4.3e-07	RNA recognition motif
RRM_1	PF00076	8 - 64	8.5e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30961
malus_domestica	MD00G1000100.v1.1 MD10G1108000.v1.1 MD17G1252100.v1.1
prunus_persica	Prupe.1G291300_v2.0.a1 Prupe.7G065200_v2.0.a1
pyrus_communis	pycom11g17820
rosa_chinensis	RchiOBHm_Chr6g0273961
rosa_multiflora	Rmu_sc0002299.1_g000004 Rmu_sc0006493.1_g000007 Rmu_sc0024602.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049870
rosa_rugosa	Rorug01G0485500 Rorug05G0082700
rosa_samantha	Rh2DG235300 Rh6BG083700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	14
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	3 cut(s)	126, 161, 174
AfiI	CCNNNNNNNGG	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	22, 237
AluI	AGCT	2 cut(s)	22, 237
Alw21I	GWGCWC	1 cut(s)	139
AlwI	GGATC	3 cut(s)	126, 161, 174
ApeKI	GCWGC	2 cut(s)	216, 237
Asp700I	GAANNNNTTC	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	203, 224
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	43
BclI	TGATCA	1 cut(s)	108
BfmI	CTRYAG	2 cut(s)	171, 251
BisI	GCNGC	2 cut(s)	217, 238
BlsI	GCNGC	2 cut(s)	218, 239
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	6, 168
BmrFI	CCNGG	1 cut(s)	43
BpuEI	CTTGAG	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseNI	ACTGG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	203, 224
BsgI	GTGCAG	2 cut(s)	202, 223
BshVI	ATCGAT	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	5 cut(s)	10, 108, 118, 166, 207
BspACI	CCGC	1 cut(s)	164
BspDI	ATCGAT	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	6, 168
BspMAI	CTGCAG	1 cut(s)	175
BspPI	GGATC	3 cut(s)	126, 161, 174
BsrI	ACTGG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	5 cut(s)	10, 108, 118, 166, 207
BssSI	CACGAG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	223
BstKTI	GATC	5 cut(s)	13, 111, 121, 169, 210
BstMBI	GATC	5 cut(s)	10, 108, 118, 166, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	2 cut(s)	171, 251
BstV1I	GCAGC	2 cut(s)	203, 224
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	210
BsuTUI	ATCGAT	1 cut(s)	210
CciI	TCATGA	1 cut(s)	111
ClaI	ATCGAT	1 cut(s)	210
CviAII	CATG	5 cut(s)	14, 112, 122, 193, 205
CviJI	RGCY	4 cut(s)	22, 64, 104, 237
CviKI_1	RGCY	4 cut(s)	22, 64, 104, 237
DpnI	GATC	5 cut(s)	12, 110, 120, 168, 209
DpnII	GATC	5 cut(s)	10, 108, 118, 166, 207
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	5 cut(s)	17, 115, 125, 196, 208
FaiI	YATR	6 cut(s)	15, 87, 113, 123, 194, 206
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	13, 111, 121, 192, 204
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	217, 238
Fsp4HI	GCNGC	2 cut(s)	217, 238
GluI	GCNGC	2 cut(s)	217, 238
Hin1II	CATG	5 cut(s)	17, 115, 125, 196, 208
HinfI	GANTC	1 cut(s)	144
Hpy188III	TCNNGA	2 cut(s)	79, 112
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	125, 173, 179, 219, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	17, 115, 125, 196, 208
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	10, 108, 118, 166, 207
LpnPI	CCDG	6 cut(s)	21, 28, 55, 64, 114, 183
Lsp1109I	GCAGC	2 cut(s)	203, 224
MalI	GATC	5 cut(s)	12, 110, 120, 168, 209
MboI	GATC	5 cut(s)	10, 108, 118, 166, 207
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	139
MnlI	CCTC	4 cut(s)	49, 85, 94, 108
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	231
MspR9I	CCNGG	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	5 cut(s)	10, 108, 118, 166, 207
NlaIII	CATG	5 cut(s)	17, 115, 125, 196, 208
NlaIV	GGNNCC	2 cut(s)	6, 168
PagI	TCATGA	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	144
PflMI	CCANNNNNTGG	1 cut(s)	14
PkrI	GCNGC	2 cut(s)	218, 239
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	6, 168
PstI	CTGCAG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	2 cut(s)	217, 238
Sau3AI	GATC	5 cut(s)	10, 108, 118, 166, 207
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	4 cut(s)	24, 96, 239, 252
SfcI	CTRYAG	2 cut(s)	171, 251
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	210
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	2 cut(s)	216, 237
TspDTI	ATGAA	1 cut(s)	16
Van91I	CCANNNNNTGG	1 cut(s)	14
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.