Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015696

Physical Location & Seq

Genomic Coordinates Forward (+)

10358144 .. 10360983

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G065200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGACTCAGACGAAGGTAAGCTGTTCATAGGAGGGCTGGCCTGGGACACCACAGAGGACAAGCTCACCGACTACTTCAACCAGTACGGTGACGTCACCCAGACCGTCATCATGCGCGACAAGACCACTGGCCGGCCCAGGGGCTTCGGCTTCGTTGTCTTCTCTGATCCCTCCGTGCTCGATAGGGTCCTCAACGATAAGCACACCATTAATGGCCAAGGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0007275 GO:0008150 GO:0008187 GO:0008266 GO:0009791 GO:0010228 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034046 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0047484 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0061458 GO:0065007 GO:0070013 GO:0070717 GO:0080134 GO:0097159 GO:1901000 GO:1901363 GO:1990904 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko03015 ko03040 map00260 map01100 map03015 map03040

Pfam Domains

Protein Families

HnRNPA1 RRM_1

Protein Analysis

76

Amino Acids

8.44

Weight (kDa)

4.83

Isoelectric Point (pI)

1.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30961
malus_domestica	MD00G1000100.v1.1 MD10G1108000.v1.1 MD17G1252100.v1.1
prunus_persica	Prupe.1G291300_v2.0.a1 Prupe.7G065200_v2.0.a1
pyrus_communis	pycom11g17820
rosa_chinensis	RchiOBHm_Chr6g0273961
rosa_multiflora	Rmu_sc0002299.1_g000004 Rmu_sc0006493.1_g000007 Rmu_sc0024602.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049870
rosa_rugosa	Rorug01G0485500 Rorug05G0082700
rosa_samantha	Rh2DG235300 Rh6BG083700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccII	CGCG	1 cut(s)	117
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	2 cut(s)	130, 214
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	132, 139
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	2 cut(s)	41, 137
AluBI	AGCT	2 cut(s)	22, 64
AluI	AGCT	2 cut(s)	22, 64
Alw21I	GWGCWC	1 cut(s)	180
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	4 cut(s)	39, 130, 134, 214
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	2 cut(s)	135, 187
AsuHPI	GGTGA	3 cut(s)	58, 88, 101
AvaII	GGWCC	1 cut(s)	187
BalI	TGGCCA	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	180
BciT130I	CCWGG	2 cut(s)	43, 139
Bme1390I	CCNGG	2 cut(s)	43, 139
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	135, 187
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	43, 139
BpiI	GAAGAC	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	4 cut(s)	42, 137, 138, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 139
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	2 cut(s)	82, 133
BseBI	CCWGG	2 cut(s)	43, 139
BseDI	CCNNGG	4 cut(s)	42, 137, 138, 217
BseLI	CCNNNNNNNGG	2 cut(s)	132, 139
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	82, 133
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	4 cut(s)	41, 132, 136, 216
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	132, 139
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	41, 132, 136, 216
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	4 cut(s)	41, 132, 136, 216
BspCNI	CTCAG	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	82, 133
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	4 cut(s)	42, 137, 138, 217
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	2 cut(s)	43, 139
Bst4CI	ACNGT	2 cut(s)	89, 106
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	2 cut(s)	39, 134
BstDEI	CTNAG	1 cut(s)	7
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	43, 139
BstSCI	CCNGG	2 cut(s)	41, 137
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	41, 132, 136, 216
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	2 cut(s)	39, 134
CfoI	GCGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	135, 187
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	9 cut(s)	22, 37, 41, 64, 132, 136, 144, 150, 216
CviKI_1	RGCY	9 cut(s)	22, 37, 41, 64, 132, 136, 144, 150, 216
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	130, 214
Eco130I	CCWWGG	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	41, 137
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	29, 113
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	111
FseI	GGCCGGCC	1 cut(s)	136
GlaI	GCGC	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	41, 132, 136, 216
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	115
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	3 cut(s)	58, 88, 101
Hpy188I	TCNGA	2 cut(s)	10, 166
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	2 cut(s)	89, 106
HpyCH4IV	ACGT	2 cut(s)	93, 223
HpyF3I	CTNAG	1 cut(s)	7
HpySE526I	ACGT	2 cut(s)	93, 223
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	115
HspAI	GCGC	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	132
KroNI	GCCGGC	1 cut(s)	134
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	23, 28, 55, 95, 113, 114, 124, 146, 151
MaeII	ACGT	2 cut(s)	93, 223
MaeIII	GTNAC	2 cut(s)	89, 94
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	216
MluNI	TGGCCA	1 cut(s)	216
MnlI	CCTC	4 cut(s)	26, 49, 181, 200
Mox20I	TGGCCA	1 cut(s)	216
MroNI	GCCGGC	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	2 cut(s)	43, 139
MvaI	CCWGG	2 cut(s)	43, 139
MvnI	CGCG	1 cut(s)	117
NaeI	GCCGGC	1 cut(s)	134
NdeII	GATC	1 cut(s)	166
NgoMIV	GCCGGC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	2 cut(s)	89, 94
PasI	CCCWGGG	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	134
PpuMI	RGGWCCY	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	187
Psp6I	CCWGG	2 cut(s)	41, 137
PspGI	CCWGG	2 cut(s)	41, 137
PspN4I	GGNNCC	1 cut(s)	188
PspPI	GGNCC	2 cut(s)	135, 187
PspPPI	RGGWCCY	1 cut(s)	187
RigI	GGCCGGCC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	135, 187
ScrFI	CCNGG	2 cut(s)	43, 139
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	5 cut(s)	19, 24, 66, 96, 226
SinI	GGWCC	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	41, 137
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	89, 106
TaiI	ACGT	2 cut(s)	96, 226
TaqI	TCGA	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	89, 94
Tsp45I	GTSAC	2 cut(s)	89, 94
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	187
VspI	ATTAAT	1 cut(s)	210
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.