Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015696

Physical Location & Seq

Genomic Coordinates Reverse (-)

17767767 .. 17768072

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1108000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAAAGAGAGAGTACTATCTAGGTTCTGTCTGAATTTTGGAAAGAAAAAGATGGAACCAGATCATGGGAAGCTCTTTATCGGTGGGATTTCCTGGGACACAGATGAGGAACGGCTCAAGGAATATTTCGGGAAGTATGGAGAGGTGGTAGAGGCTGTGATCATGAGGTATCGTGCAACCGGTCGTGCTCGTGGATTCAGGTTTGTTGTCTTTGCTGATCCTGTGGTTGCAGAAAGAGTTGTCATGGATAAGCACATGATCGATTGTCGCACAGTCATTGTCAAAAGCTGCACAAAAAACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0008150 GO:0008187 GO:0008266 GO:0009987 GO:0030154 GO:0032502 GO:0032991 GO:0044424 GO:0044464 GO:0048468 GO:0048856 GO:0048863 GO:0048864 GO:0048869 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

RRM_1

Protein Analysis

102

Amino Acids

11.75

Weight (kDa)

9.44

Isoelectric Point (pI)

12.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_7	PF16367	24 - 78	1.4e-06	RNA recognition motif
RRM_1	PF00076	25 - 82	4.2e-14	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015696)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30961
malus_domestica	MD00G1000100.v1.1 MD10G1108000.v1.1 MD17G1252100.v1.1
prunus_persica	Prupe.1G291300_v2.0.a1 Prupe.7G065200_v2.0.a1
pyrus_communis	pycom11g17820
rosa_chinensis	RchiOBHm_Chr6g0273961
rosa_multiflora	Rmu_sc0002299.1_g000004 Rmu_sc0006493.1_g000007 Rmu_sc0024602.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049870
rosa_rugosa	Rorug01G0485500 Rorug05G0082700
rosa_samantha	Rh2DG235300 Rh6BG083700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	34
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	2 cut(s)	73, 288
AluI	AGCT	2 cut(s)	73, 288
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	34
AsiGI	ACCGGT	1 cut(s)	179
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	94
BclI	TGATCA	1 cut(s)	159
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	94
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	274
Bsh1285I	CGRYCG	1 cut(s)	184
BshTI	ACCGGT	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	190
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	4 cut(s)	61, 159, 217, 258
BspDI	ATCGAT	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	57
BspPI	GGATC	1 cut(s)	212
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	4 cut(s)	61, 159, 217, 258
BssSI	CACGAG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	274
BstKTI	GATC	4 cut(s)	64, 162, 220, 261
BstMBI	GATC	4 cut(s)	61, 159, 217, 258
BstMCI	CGRYCG	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	261
BsuTUI	ATCGAT	1 cut(s)	261
CciI	TCATGA	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	179
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	4 cut(s)	65, 163, 244, 256
CviJI	RGCY	4 cut(s)	73, 115, 155, 288
CviKI_1	RGCY	4 cut(s)	73, 115, 155, 288
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	4 cut(s)	63, 161, 219, 260
DpnII	GATC	4 cut(s)	61, 159, 217, 258
EcoRII	CCWGG	1 cut(s)	92
FaeI	CATG	4 cut(s)	68, 166, 247, 259
FaiI	YATR	5 cut(s)	66, 138, 164, 245, 257
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	4 cut(s)	64, 162, 243, 255
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	289
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	4 cut(s)	68, 166, 247, 259
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	1 cut(s)	180
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	2 cut(s)	130, 163
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	176, 230, 291
Hsp92II	CATG	4 cut(s)	68, 166, 247, 259
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	61, 159, 217, 258
LpnPI	CCDG	6 cut(s)	72, 79, 106, 184, 193, 234
Lsp1109I	GCAGC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	21
MalI	GATC	4 cut(s)	63, 161, 219, 260
MboI	GATC	4 cut(s)	61, 159, 217, 258
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	1 cut(s)	34
MnlI	CCTC	4 cut(s)	100, 136, 145, 159
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	61, 159, 217, 258
NlaIII	CATG	4 cut(s)	68, 166, 247, 259
NlaIV	GGNNCC	1 cut(s)	57
PagI	TCATGA	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
SatI	GCNGC	1 cut(s)	289
Sau3AI	GATC	4 cut(s)	61, 159, 217, 258
ScaI	AGTACT	1 cut(s)	15
ScrFI	CCNGG	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	190
SetI	ASST	7 cut(s)	26, 75, 147, 170, 203, 290, 303
SfcI	CTRYAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	34
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	92
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	261
TasI	AATT	1 cut(s)	34
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	195
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	34
XspI	CTAG	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.