RING-type E3 ubiquitin transferase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g32250 |
| malus_domestica | MD01G1085600.v1.1 MD07G1154800.v1.1 MD07G1295700.v1.1 |
| prunus_persica | Prupe.2G193400_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 |
| pyrus_communis | pycom07g15200 pycom07g26840 |
| rosa_chinensis | RchiOBHm_Chr1g0360521 RchiOBHm_Chr1g0381931 |
| rosa_laevigata | RLG00000026199 RLG00000027799 |
| rosa_multiflora | Rmu_sc0010238.1_g000006 Rmu_ssc0000337.1_g000005 |
| rosa_roxburghii | Rroxscaffold_4G00278330 Rroxscaffold_4G00296020 |
| rosa_rugosa | Rorug01G0279400 Rorug01G0279500 Rorug01G0279600 Rorug01G0279700 Rorug01G0432300 |
| rosa_samantha | Rh1AG291700 Rh1AG455500 Rh1BG256700 Rh1BG412700 Rh1CG274400 Rh1CG427500 Rh1DG286500 Rh1DG445000 |
| rosa_wichuraiana | Rw1G025840 Rw1G041360 Rw1G041490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2198 |
| Acc36I | ACCTGC | 1 cut(s) | 1813 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2056 |
| AccBSI | CCGCTC | 1 cut(s) | 1287 |
| AccI | GTMKAC | 2 cut(s) | 367, 2176 |
| AccII | CGCG | 1 cut(s) | 1363 |
| AciI | CCGC | 5 cut(s) | 1285, 1875, 2232, 2270, 2775 |
| AclWI | GGATC | 4 cut(s) | 1016, 1890, 2271, 2669 |
| AcsI | RAATTY | 1 cut(s) | 602 |
| AcuI | CTGAAG | 4 cut(s) | 675, 1022, 1527, 1926 |
| AfaI | GTAC | 2 cut(s) | 340, 2988 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1120, 1733, 2056, 2190, 2603, 2659 |
| AflIII | ACRYGT | 1 cut(s) | 435 |
| AjnI | CCWGG | 6 cut(s) | 144, 1004, 1737, 2602, 2840, 2981 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1079, 1111, 2043, 2075 |
| AleI | CACNNNNGTG | 1 cut(s) | 1256 |
| Alw21I | GWGCWC | 3 cut(s) | 361, 2389, 2831 |
| Alw26I | GTCTC | 3 cut(s) | 554, 1894, 2026 |
| AlwI | GGATC | 4 cut(s) | 1016, 1890, 2271, 2669 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 728, 2473 |
| AoxI | GGCC | 4 cut(s) | 205, 953, 1735, 2661 |
| ApoI | RAATTY | 1 cut(s) | 602 |
| Asp700I | GAANNNNTTC | 6 cut(s) | 157, 792, 1062, 1140, 1514, 1647 |
| AspLEI | GCGC | 4 cut(s) | 328, 1232, 1363, 2305 |
| AspS9I | GGNCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| AsuHPI | GGTGA | 9 cut(s) | 1103, 1135, 1429, 1682, 1703, 1797, 2147, 2258, 2768 |
| AvaII | GGWCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| BaeGI | GKGCMC | 1 cut(s) | 1639 |
| BanII | GRGCYC | 2 cut(s) | 2389, 2831 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 3004 |
| BbsI | GAAGAC | 2 cut(s) | 2365, 3012 |
| Bbv12I | GWGCWC | 3 cut(s) | 361, 2389, 2831 |
| BbvCI | CCTCAGC | 2 cut(s) | 468, 729 |
| BccI | CCATC | 9 cut(s) | 1211, 1492, 1625, 2111, 2126, 2218, 2327, 2747, 2810 |
| BceAI | ACGGC | 1 cut(s) | 1313 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1381, 1415 |
| BciT130I | CCWGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| BclI | TGATCA | 4 cut(s) | 300, 1429, 1480, 1603 |
| BcoDI | GTCTC | 3 cut(s) | 554, 1894, 2026 |
| BfmI | CTRYAG | 3 cut(s) | 462, 1082, 1620 |
| BfoI | RGCGCY | 2 cut(s) | 329, 2306 |
| BfuAI | ACCTGC | 1 cut(s) | 1813 |
| Bme1390I | CCNGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| Bme18I | GGWCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| BmgT120I | GGNCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| BmiI | GGNNCC | 2 cut(s) | 789, 837 |
| BmrFI | CCNGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| BmrI | ACTGGG | 1 cut(s) | 2450 |
| BmsI | GCATC | 9 cut(s) | 35, 265, 433, 1379, 1977, 2089, 2335, 2417, 2722 |
| BmuI | ACTGGG | 1 cut(s) | 2450 |
| BpiI | GAAGAC | 2 cut(s) | 2365, 3012 |
| BpmI | CTGGAG | 2 cut(s) | 167, 1760 |
| Bpu10I | CCTNAGC | 3 cut(s) | 468, 729, 2189 |
| BpuEI | CTTGAG | 6 cut(s) | 661, 804, 1851, 2424, 2569, 2888 |
| BsaJI | CCNNGG | 3 cut(s) | 96, 2298, 2982 |
| BsaWI | WCCGGW | 2 cut(s) | 37, 1439 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1120, 1733, 2056, 2190, 2603, 2659 |
| Bse1I | ACTGG | 5 cut(s) | 1145, 1951, 2284, 2456, 2478 |
| Bse3DI | GCAATG | 5 cut(s) | 1014, 1322, 1995, 2241, 2940 |
| BseBI | CCWGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| BseDI | CCNNGG | 3 cut(s) | 96, 2298, 2982 |
| BseGI | GGATG | 6 cut(s) | 394, 448, 634, 1203, 1394, 1968 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1120, 1733, 2056, 2190, 2603, 2659 |
| BseMI | GCAATG | 5 cut(s) | 1014, 1322, 1995, 2241, 2940 |
| BseMII | CTCAG | 7 cut(s) | 71, 459, 549, 720, 869, 2816, 2960 |
| BseNI | ACTGG | 5 cut(s) | 1145, 1951, 2284, 2456, 2478 |
| BseRI | GAGGAG | 2 cut(s) | 623, 746 |
| BseSI | GKGCMC | 1 cut(s) | 1639 |
| BsgI | GTGCAG | 4 cut(s) | 1779, 2486, 2577, 2598 |
| Bsh1236I | CGCG | 1 cut(s) | 1363 |
| BshFI | GGCC | 4 cut(s) | 207, 955, 1737, 2663 |
| BsiHKAI | GWGCWC | 3 cut(s) | 361, 2389, 2831 |
| BsiSI | CCGG | 3 cut(s) | 38, 310, 1440 |
| BslFI | GGGAC | 1 cut(s) | 511 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1120, 1733, 2056, 2190, 2603, 2659 |
| BsmAI | GTCTC | 3 cut(s) | 554, 1894, 2026 |
| BsmFI | GGGAC | 1 cut(s) | 511 |
| BsmI | GAATGC | 5 cut(s) | 196, 583, 1198, 2380, 2694 |
| BsnI | GGCC | 4 cut(s) | 207, 955, 1737, 2663 |
| Bsp1286I | GDGCHC | 4 cut(s) | 361, 1639, 2389, 2831 |
| Bsp143I | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| BspACI | CCGC | 5 cut(s) | 1285, 1875, 2232, 2270, 2775 |
| BspANI | GGCC | 4 cut(s) | 207, 955, 1737, 2663 |
| BspCNI | CTCAG | 7 cut(s) | 70, 460, 550, 721, 868, 2817, 2959 |
| BspFNI | CGCG | 1 cut(s) | 1363 |
| BspLI | GGNNCC | 2 cut(s) | 789, 837 |
| BspMAI | CTGCAG | 1 cut(s) | 1086 |
| BspMI | ACCTGC | 1 cut(s) | 1813 |
| BspPI | GGATC | 4 cut(s) | 1016, 1890, 2271, 2669 |
| BspQI | GCTCTTC | 2 cut(s) | 1044, 1710 |
| BsrBI | CCGCTC | 1 cut(s) | 1287 |
| BsrDI | GCAATG | 5 cut(s) | 1014, 1322, 1995, 2241, 2940 |
| BsrI | ACTGG | 5 cut(s) | 1145, 1951, 2284, 2456, 2478 |
| BssECI | CCNNGG | 3 cut(s) | 96, 2298, 2982 |
| BssMI | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| BssNAI | GTATAC | 1 cut(s) | 2177 |
| BssT1I | CCWWGG | 1 cut(s) | 96 |
| Bst1107I | GTATAC | 1 cut(s) | 2177 |
| Bst2UI | CCWGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| Bst6I | CTCTTC | 8 cut(s) | 468, 798, 978, 1041, 1044, 1676, 1710, 2214 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 426, 1060 |
| BstC8I | GCNNGC | 1 cut(s) | 2555 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2188, 2657 |
| BstF5I | GGATG | 6 cut(s) | 394, 448, 634, 1203, 1394, 1968 |
| BstFNI | CGCG | 1 cut(s) | 1363 |
| BstH2I | RGCGCY | 2 cut(s) | 329, 2306 |
| BstHHI | GCGC | 4 cut(s) | 328, 1232, 1363, 2305 |
| BstKTI | GATC | 9 cut(s) | 303, 523, 1011, 1432, 1483, 1606, 1885, 2266, 2677 |
| BstMAI | GTCTC | 3 cut(s) | 554, 1894, 2026 |
| BstMBI | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| BstNI | CCWGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| BstNSI | RCATGY | 3 cut(s) | 439, 1448, 2718 |
| BstSCI | CCNGG | 6 cut(s) | 144, 1004, 1737, 2602, 2840, 2981 |
| BstSFI | CTRYAG | 3 cut(s) | 462, 1082, 1620 |
| BstSLI | GKGCMC | 1 cut(s) | 1639 |
| BstUI | CGCG | 1 cut(s) | 1363 |
| BstV2I | GAAGAC | 2 cut(s) | 2365, 3012 |
| BstZ17I | GTATAC | 1 cut(s) | 2177 |
| BsuRI | GGCC | 4 cut(s) | 207, 955, 1737, 2663 |
| BtsCI | GGATG | 6 cut(s) | 394, 448, 634, 1203, 1394, 1968 |
| BtsI | GCAGTG | 2 cut(s) | 374, 1263 |
| BtsIMutI | CAGTG | 5 cut(s) | 69, 374, 1263, 1769, 2463 |
| BveI | ACCTGC | 1 cut(s) | 1813 |
| Cac8I | GCNNGC | 1 cut(s) | 2555 |
| CaiI | CAGNNNCTG | 2 cut(s) | 728, 2473 |
| CfoI | GCGC | 4 cut(s) | 328, 1232, 1363, 2305 |
| Cfr13I | GGNCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| CseI | GACGC | 1 cut(s) | 2801 |
| Csp6I | GTAC | 2 cut(s) | 339, 2987 |
| CviQI | GTAC | 2 cut(s) | 339, 2987 |
| DpnI | GATC | 9 cut(s) | 302, 522, 1010, 1431, 1482, 1605, 1884, 2265, 2676 |
| DpnII | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| Eam1104I | CTCTTC | 8 cut(s) | 468, 798, 978, 1041, 1044, 1676, 1710, 2214 |
| EarI | CTCTTC | 8 cut(s) | 468, 798, 978, 1041, 1044, 1676, 1710, 2214 |
| Ecl136II | GAGCTC | 2 cut(s) | 2387, 2829 |
| Eco130I | CCWWGG | 1 cut(s) | 96 |
| Eco147I | AGGCCT | 1 cut(s) | 207 |
| Eco24I | GRGCYC | 2 cut(s) | 2389, 2831 |
| Eco47I | GGWCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| Eco53kI | GAGCTC | 2 cut(s) | 2387, 2829 |
| Eco57I | CTGAAG | 4 cut(s) | 675, 1022, 1527, 1926 |
| EcoICRI | GAGCTC | 2 cut(s) | 2387, 2829 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2188, 2657 |
| EcoRII | CCWGG | 6 cut(s) | 144, 1004, 1737, 2602, 2840, 2981 |
| EcoT14I | CCWWGG | 1 cut(s) | 96 |
| EcoT22I | ATGCAT | 1 cut(s) | 1394 |
| EcoT38I | GRGCYC | 2 cut(s) | 2389, 2831 |
| ErhI | CCWWGG | 1 cut(s) | 96 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1047, 1079, 1692, 1724 |
| FaqI | GGGAC | 1 cut(s) | 511 |
| FauI | CCCGC | 1 cut(s) | 2277 |
| FauNDI | CATATG | 1 cut(s) | 2925 |
| FbaI | TGATCA | 4 cut(s) | 300, 1429, 1480, 1603 |
| FblI | GTMKAC | 2 cut(s) | 367, 2176 |
| FokI | GGATG | 6 cut(s) | 401, 455, 641, 1190, 1401, 1955 |
| FriOI | GRGCYC | 2 cut(s) | 2389, 2831 |
| GlaI | GCGC | 4 cut(s) | 327, 1231, 1362, 2304 |
| GsuI | CTGGAG | 2 cut(s) | 167, 1760 |
| HaeII | RGCGCY | 2 cut(s) | 329, 2306 |
| HaeIII | GGCC | 4 cut(s) | 207, 955, 1737, 2663 |
| HapII | CCGG | 3 cut(s) | 38, 310, 1440 |
| HgaI | GACGC | 1 cut(s) | 2801 |
| HhaI | GCGC | 4 cut(s) | 328, 1232, 1363, 2305 |
| Hin6I | GCGC | 4 cut(s) | 326, 1230, 1361, 2303 |
| HinP1I | GCGC | 4 cut(s) | 326, 1230, 1361, 2303 |
| HincII | GTYRAC | 2 cut(s) | 1599, 2898 |
| HindII | GTYRAC | 2 cut(s) | 1599, 2898 |
| HindIII | AAGCTT | 2 cut(s) | 2545, 2721 |
| HinfI | GANTC | 7 cut(s) | 562, 570, 907, 1087, 1248, 1465, 2639 |
| HpaI | GTTAAC | 1 cut(s) | 2898 |
| HpaII | CCGG | 3 cut(s) | 38, 310, 1440 |
| HphI | GGTGA | 9 cut(s) | 1103, 1135, 1429, 1682, 1703, 1797, 2147, 2258, 2768 |
| Hpy166II | GTNNAC | 8 cut(s) | 368, 742, 835, 1599, 2177, 2898, 2938, 3014 |
| Hpy8I | GTNNAC | 8 cut(s) | 368, 742, 835, 1599, 2177, 2898, 2938, 3014 |
| Hpy99I | CGWCG | 1 cut(s) | 2795 |
| HpyAV | CCTTC | 5 cut(s) | 197, 390, 503, 768, 893 |
| HpyCH4IV | ACGT | 1 cut(s) | 619 |
| HpySE526I | ACGT | 1 cut(s) | 619 |
| HspAI | GCGC | 4 cut(s) | 326, 1230, 1361, 2303 |
| Ksp22I | TGATCA | 4 cut(s) | 300, 1429, 1480, 1603 |
| KspAI | GTTAAC | 1 cut(s) | 2898 |
| Kzo9I | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| LguI | GCTCTTC | 2 cut(s) | 1044, 1710 |
| LmnI | GCTCC | 2 cut(s) | 2155, 2384 |
| LweI | GCATC | 9 cut(s) | 35, 265, 433, 1379, 1977, 2089, 2335, 2417, 2722 |
| MaeII | ACGT | 1 cut(s) | 619 |
| MaeIII | GTNAC | 6 cut(s) | 683, 1103, 1123, 1435, 1896, 2844 |
| MalI | GATC | 9 cut(s) | 302, 522, 1010, 1431, 1482, 1605, 1884, 2265, 2676 |
| MbiI | CCGCTC | 1 cut(s) | 1287 |
| MboI | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| MfeI | CAATTG | 2 cut(s) | 304, 2996 |
| MhlI | GDGCHC | 4 cut(s) | 361, 1639, 2389, 2831 |
| MlyI | GAGTC | 1 cut(s) | 556 |
| MmeI | TCCRAC | 6 cut(s) | 420, 765, 1135, 1566, 1744, 2362 |
| Mph1103I | ATGCAT | 1 cut(s) | 1394 |
| MroXI | GAANNNNTTC | 6 cut(s) | 157, 792, 1062, 1140, 1514, 1647 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1256, 2576 |
| MspA1I | CMGCKG | 4 cut(s) | 461, 725, 1330, 2510 |
| MspI | CCGG | 3 cut(s) | 38, 310, 1440 |
| MspR9I | CCNGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| MunI | CAATTG | 2 cut(s) | 304, 2996 |
| Mva1269I | GAATGC | 5 cut(s) | 196, 583, 1198, 2380, 2694 |
| MvaI | CCWGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| MvnI | CGCG | 1 cut(s) | 1363 |
| NdeI | CATATG | 1 cut(s) | 2925 |
| NdeII | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| NlaIV | GGNNCC | 2 cut(s) | 789, 837 |
| NmuCI | GTSAC | 4 cut(s) | 683, 1103, 1123, 1435 |
| NsiI | ATGCAT | 1 cut(s) | 1394 |
| NspI | RCATGY | 3 cut(s) | 439, 1448, 2718 |
| OliI | CACNNNNGTG | 1 cut(s) | 1256 |
| PceI | AGGCCT | 1 cut(s) | 207 |
| PciI | ACATGT | 1 cut(s) | 435 |
| PciSI | GCTCTTC | 2 cut(s) | 1044, 1710 |
| PctI | GAATGC | 5 cut(s) | 196, 583, 1198, 2380, 2694 |
| PdmI | GAANNNNTTC | 6 cut(s) | 157, 792, 1062, 1140, 1514, 1647 |
| PfeI | GAWTC | 6 cut(s) | 570, 907, 1087, 1248, 1465, 2639 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2056 |
| PleI | GAGTC | 1 cut(s) | 556 |
| PpsI | GAGTC | 1 cut(s) | 556 |
| PscI | ACATGT | 1 cut(s) | 435 |
| PsiI | TTATAA | 1 cut(s) | 2198 |
| Psp124BI | GAGCTC | 2 cut(s) | 2389, 2831 |
| Psp6I | CCWGG | 6 cut(s) | 144, 1004, 1737, 2602, 2840, 2981 |
| PspGI | CCWGG | 6 cut(s) | 144, 1004, 1737, 2602, 2840, 2981 |
| PspN4I | GGNNCC | 2 cut(s) | 789, 837 |
| PspPI | GGNCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| PstI | CTGCAG | 1 cut(s) | 1086 |
| PstNI | CAGNNNCTG | 2 cut(s) | 728, 2473 |
| PvuII | CAGCTG | 4 cut(s) | 461, 725, 1330, 2510 |
| RsaI | GTAC | 2 cut(s) | 340, 2988 |
| RsaNI | GTAC | 2 cut(s) | 339, 2987 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1256, 2576 |
| SacI | GAGCTC | 2 cut(s) | 2389, 2831 |
| SapI | GCTCTTC | 2 cut(s) | 1044, 1710 |
| Sau3AI | GATC | 9 cut(s) | 300, 520, 1008, 1429, 1480, 1603, 1882, 2263, 2674 |
| Sau96I | GGNCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| SchI | GAGTC | 1 cut(s) | 556 |
| ScrFI | CCNGG | 6 cut(s) | 146, 1006, 1739, 2604, 2842, 2983 |
| SduI | GDGCHC | 4 cut(s) | 361, 1639, 2389, 2831 |
| SfaNI | GCATC | 9 cut(s) | 35, 265, 433, 1379, 1977, 2089, 2335, 2417, 2722 |
| SfcI | CTRYAG | 3 cut(s) | 462, 1082, 1620 |
| SinI | GGWCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1256, 2576 |
| SmlI | CTYRAG | 6 cut(s) | 640, 819, 1866, 2439, 2548, 2903 |
| SmoI | CTYRAG | 6 cut(s) | 640, 819, 1866, 2439, 2548, 2903 |
| SseBI | AGGCCT | 1 cut(s) | 207 |
| SsiI | CCGC | 5 cut(s) | 1285, 1875, 2232, 2270, 2775 |
| SstI | GAGCTC | 2 cut(s) | 2389, 2831 |
| StuI | AGGCCT | 1 cut(s) | 207 |
| StyD4I | CCNGG | 6 cut(s) | 144, 1004, 1737, 2602, 2840, 2981 |
| StyI | CCWWGG | 1 cut(s) | 96 |
| TaiI | ACGT | 1 cut(s) | 622 |
| TaqI | TCGA | 3 cut(s) | 235, 1043, 1346 |
| TaqII | GACCGA | 1 cut(s) | 2795 |
| TatI | WGTACW | 1 cut(s) | 338 |
| TauI | GCSGC | 3 cut(s) | 1877, 2234, 2778 |
| TfiI | GAWTC | 6 cut(s) | 570, 907, 1087, 1248, 1465, 2639 |
| TscAI | CASTG | 5 cut(s) | 69, 381, 1263, 1776, 2463 |
| TseFI | GTSAC | 4 cut(s) | 683, 1103, 1123, 1435 |
| Tsp45I | GTSAC | 4 cut(s) | 683, 1103, 1123, 1435 |
| TspDTI | ATGAA | 6 cut(s) | 281, 384, 756, 840, 2634, 2981 |
| TspRI | CASTG | 5 cut(s) | 69, 381, 1263, 1776, 2463 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2056 |
| VpaK11BI | GGWCC | 4 cut(s) | 835, 1547, 1766, 1949 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2188, 2657 |
| XapI | RAATTY | 1 cut(s) | 602 |
| XbaI | TCTAGA | 3 cut(s) | 1459, 2290, 2728 |
| XceI | RCATGY | 3 cut(s) | 439, 1448, 2718 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2003 |
| XmiI | GTMKAC | 2 cut(s) | 367, 2176 |
| XmnI | GAANNNNTTC | 6 cut(s) | 157, 792, 1062, 1140, 1514, 1647 |
| Zsp2I | ATGCAT | 1 cut(s) | 1394 |