Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001613

Physical Location & Seq

Genomic Coordinates Reverse (-)

39241836 .. 39242476

Gene Structure 641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGACCAGAAAGCGCTTGAAACATCTATCCAATATCAACGCTTCCTTATCCGTCAGCCACCACCATGTTAATGTGACGACAAGATGGGAAAGAGTGTACTTTGGCCCACTGACAGACCATGTGATTCAACTTCATCTTGAAGGAGTCTCTTCACAAGGACCTTCATCTTTGGAAGAACTAGATGCATGCTTCCCTTCAGTTGAGGAGTTCACAGTTGCCATGGACAACAATAAAGCAGTACAAGTTTTTGAGATTAGGAGTAACAGACGATTTTGCCACTGCCTCTTCTCTGTTCTTACGGAATTGCCCCAACACCTGTCTACTTCCTGTCCTGCTGCTCAGTACTACCGTGGCACCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_2 U-box

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

6.69

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g32250
malus_domestica	MD01G1085600.v1.1 MD07G1154800.v1.1 MD07G1295700.v1.1
prunus_persica	Prupe.2G193400_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1
pyrus_communis	pycom07g15200 pycom07g26840
rosa_chinensis	RchiOBHm_Chr1g0360521 RchiOBHm_Chr1g0381931
rosa_laevigata	RLG00000026199 RLG00000027799
rosa_multiflora	Rmu_sc0010238.1_g000006 Rmu_ssc0000337.1_g000005
rosa_roxburghii	Rroxscaffold_4G00278330 Rroxscaffold_4G00296020
rosa_rugosa	Rorug01G0279400 Rorug01G0279500 Rorug01G0279600 Rorug01G0279700 Rorug01G0432300
rosa_samantha	Rh1AG291700 Rh1AG455500 Rh1BG256700 Rh1BG412700 Rh1CG274400 Rh1CG427500 Rh1DG286500 Rh1DG445000
rosa_wichuraiana	Rw1G025840 Rw1G041360 Rw1G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	101, 243, 347
AfeI	AGCGCT	1 cut(s)	17
AgsI	TTSAA	3 cut(s)	22, 131, 143
Alw26I	GTCTC	1 cut(s)	154
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	107, 161
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	1 cut(s)	81
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	19
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	347
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	107, 161
BmiI	GGNNCC	1 cut(s)	358
BmsI	GCATC	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	222, 352
BseDI	CCNNGG	2 cut(s)	222, 352
BseMII	CTCAG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	108
Bsp19I	CCATGG	1 cut(s)	222
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	356
BssECI	CCNNGG	2 cut(s)	222, 352
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	3 cut(s)	217, 353, 361
Bst6I	CTCTTC	2 cut(s)	157, 293
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	2 cut(s)	222, 352
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	2 cut(s)	222, 352
BtsI	GCAGTG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	110, 280
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	2 cut(s)	107, 161
Csp6I	GTAC	3 cut(s)	100, 242, 346
CviAII	CATG	4 cut(s)	68, 122, 189, 223
CviJI	RGCY	2 cut(s)	60, 108
CviKI_1	RGCY	2 cut(s)	60, 108
CviQI	GTAC	3 cut(s)	100, 242, 346
DdeI	CTNAG	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	157, 293
EarI	CTCTTC	2 cut(s)	157, 293
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	161
Eco47III	AGCGCT	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	4 cut(s)	71, 125, 192, 226
FaiI	YATR	4 cut(s)	69, 123, 190, 224
FatI	CATG	4 cut(s)	67, 121, 188, 222
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	339
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	18
Hin1II	CATG	4 cut(s)	71, 125, 192, 226
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HinfI	GANTC	2 cut(s)	127, 147
Hpy166II	GTNNAC	3 cut(s)	100, 213, 324
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	3 cut(s)	100, 213, 324
HpyAV	CCTTC	3 cut(s)	137, 174, 207
HpyCH4III	ACNGT	3 cut(s)	217, 353, 361
HpyCH4V	TGCA	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	71, 125, 192, 226
HspAI	GCGC	1 cut(s)	16
LpnPI	CCDG	4 cut(s)	22, 332, 343, 348
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	76, 263
MboII	GAAGA	3 cut(s)	144, 188, 280
MluCI	AATT	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	2 cut(s)	199, 296
Mph1103I	ATGCAT	1 cut(s)	190
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	2 cut(s)	66, 72
NcoI	CCATGG	1 cut(s)	222
NlaIII	CATG	4 cut(s)	71, 125, 192, 226
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	107, 161
PspPPI	RGGWCCY	1 cut(s)	161
RsaI	GTAC	3 cut(s)	101, 243, 347
RsaNI	GTAC	3 cut(s)	100, 242, 346
RseI	CAYNNNNRTG	2 cut(s)	66, 72
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	2 cut(s)	107, 161
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	1 cut(s)	156
SetI	ASST	2 cut(s)	166, 321
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	2 cut(s)	66, 72
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	217, 353, 361
TasI	AATT	1 cut(s)	305
TatI	WGTACW	3 cut(s)	99, 241, 345
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	117, 287
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	2 cut(s)	125, 156
TspGWI	ACGGA	2 cut(s)	43, 317
TspRI	CASTG	2 cut(s)	117, 287
VpaK11BI	GGWCC	1 cut(s)	161
XceI	RCATGY	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	1 cut(s)	182
ZrmI	AGTACT	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.