Rorug01G0279500

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001613
Physical Location & Seq
Reverse (-)
39235460 .. 39239827
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0279500.1

Sequence Viewer

Length: 3774 bp
ATGGAGTTGGGAAGGTGGCTCAAACATGCTTATGCAATATCAATTGTGCTTCTTCTGCATATCAACGCTTCCTTATCCCTCGGCCGCCACCATGCTAACGTGACGGCAAGGTGCCTAGAGAGGGAGAGGGATGCACTGCTTGCTATCAAAGGAGACCTGGTGGATGAATACAACCTGCTCTCTTCGTGGGGAAGCGAAGCCAAAAAGCGAGACTGTTGCGGATGGGAAAGAGTCCACTGCGATCACCAGACCGGCCATGTTATTCAACTTCATCTGAATGGAGTACTGGAAGGTGAGTATATATCGAAAACTTTGCAAGGTGAAATTAGTCCTAAAATCATTGAGTTGCAGCATTTGGAATATTTGGACCTCAGTGACAATTCCTTCACTGCCAGCCAAATTCCAGCACTCATTTGTTCTCTATCCAATTTAAGACACCTAGATCTCAGTTTCAATTACCTCTCTGGGAGCAAAATTCCGGAGCTCATTGGTAACTTGACCAATTTAAGATATCTAAATCTGTCTGTGACTCGCTTGAGTGGTGAAATTCAATATCATCACCTTGGAAACCTTACTCACTTGCAGTATCTCAATCTCGGGTGGAATGACTTCACTCAGGCTGTAGAAAACCTCAATTGGCTCCCACATCTTTCTTCTCTAAAATACCTCGACCTGAGTTCCGCCAATCTAAGTAAGGCTTCTGATTGGCTGGAAACAATAAACAAGCTCCCTAACCTAAGAAACTTGACCTTAATAGGATGTGATCTTCCTCCTCCAATTCTTTCCACTCTTTCTCACATAAATTCTTCCAATTCTCTTGTAAGTGTTGAATTGTCCGAAAATCCTGCTGTCAGTTCTTCAATATTCAAATGGTTGTGCAACTACAATACCACCCTTGTTCATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAAATCTGTACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTAACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGAAAATCTGTACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGTAACTCTGTACCTCGATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGTAACTCTGCACCTCTATTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGATCACTTGTAACTCTGTACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGTAACTCTTGACCTCTCTTACAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCAACTCTTGACCTCTCTAATAACCCACTTGAAGGAGGGATCTCAACATCCATTGGCCAATTATGTAATTTGCAAAGCTTGGCCATTTCAGACAATCTCTCCGGTAATCGATTAAACGGGACAGTACCTGAAAGTATTGGACAATGCTCAGAACTGTCCAATATGACTCTCAGTAAGAATTCTTTGGAAGGGGTAATTTCGGAAGTTCATTTTTCAAAATTGTCTGCACTAGAGGCATTGGATTTATCAGATAACCCATTAGTTTTCAATGTCAGTTCTGATTGGGTTCCTCCTTTTCAATTGTATTCTTTAAGTTTGAAATCATGCAAGGTCGGGCGGTTCCCAAACTGGCTTCGAACTCAAAAAGGTCTTTCCAAAATTGATATTTCTTATGCTGGAATTTCAGATGTCCTTCCAAGTTGGTTCTTGAGTCTCTTTGGTAACATTCAGACACTAGATCTCTCTCATAATCAACTTAGAGGAACATTTGAGAGTTCAACATTGAATGTTACATCATTGCCTGGAGGTGAAGTTCATTTCGGTTCCAATCAATTCGAAGGTTCAATACCGTCAATTTTATTTGCTGCTTCATATTTGGATCTCTCCGATAATAAGTTTTCAGATATGACAGCCTTGTGCGTTACTTCAGAGCTTCAAAATTTAAAGTTTCTTGATCTCTCAGGCAATCATGTTTCAGGAGAAATTCCAGATTGTTGGAGGCATTTGGTCTCCCTAGAACTACTCGATTTGAGTAGCAATGCTTTTTCCGGGAAAATCCCGACCACTATAGGCACTTTATCTCAAATGGAAACATTGAAATTAAGAAGCAACAAACTTGTGGGAGAATTGCCTTCATCCTTGAAGAATTGTAAGAGCTTAAAAGTGATTGAGCTCGGAGACAATAAGCTTTCAGGATCAGTCCCTGAATGGTTGGGGGTTAGTTTTCCAAATTTGGTTATACTAATGCTTCAATCTAATCAGTTTAGAGGGAGCTTGCCTTCACAGTTATGTCATTTAACGCACATTCAGATTTTGGATTTCTCTGTGAATGAAATCTCTGGAACTATACCTAAATGCCTCAATAATTTGACTTCTTTAACTCAAGGAGGAAATTCAAGTCTAACCATCAGACATTCTTTTCATCCATCTTATGCACAAGCACCTGGACCAATTATGGCGGAAGCGGAAGCACCTATGATGCCATCTGATTATTATGAGGACGATGCAACCTTCATGTGGAAAGGAAGAATGTCAGCATACAAAAGTATTTTGGGACTTGTCAAGAGAATTGATCTCTCAAGCAACAAAATAACAGGGGAAATTCCAAATGAAATCACTCATCTTGTTGGGTTGGTTTCTTTGAACCTTTCAAGAAACCATCTGACAGGACATATTCCTTCACAGATTGGAAAGTTGCAGTCATTAGATTCTCTTGATTTGTCAAGAAACCAGCTAGATGGGAAGATTCCGACAAGCCTTGCTCGGATCGATCGACTTGCTTACTTGGACTTGTCATACAACGACTTGTCTGGTGAAATTCCAACTGGTACTCAACTCCAAGTCCCTTCCTCTTTTGCTGGAAATCTTAAATTGTGTGGATTTCCACTCGACAAGATTTGTGATCCGGAAGGAAACGGTCGGCCAAATGTCTCGAGCAATGAAGAAGATCCAGATGAGCTCATCACGCAGGGTTTCTACATAAGTCTAGGAGTTGGATTTGCTGTTGGATTTTGGGGAGTCTCTGGGAGTTTGATATTCAAGAGGTCATGGAGATATGCATACTACAACTTCTTGAATGCTTCAAATGATTGGATTTACGTGAAGGTAGCTTTGATCAGACGGCAATTAAGTGATGTGCTTCATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm Arm_2 U-box

Protein Analysis

1257

Amino Acids

137.76

Weight (kDa)

5.08

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 40 - 81 9.2e-08 Leucine rich repeat N-terminal domain
LRR_14 PF23598 107 - 260 3e-13 Leucine-rich repeat region
LRR_8 PF13855 298 - 357 1.4e-13 Leucine rich repeat
LRR_8 PF13855 321 - 381 1.3e-13 Leucine rich repeat
LRR_8 PF13855 346 - 405 4.1e-14 Leucine rich repeat
LRR_8 PF13855 373 - 429 1.2e-13 Leucine rich repeat
LRR_8 PF13855 394 - 453 5.9e-13 Leucine rich repeat
LRR_8 PF13855 418 - 477 9.8e-15 Leucine rich repeat
LRR_8 PF13855 442 - 501 3.6e-15 Leucine rich repeat
LRR_8 PF13855 491 - 549 7.4e-13 Leucine rich repeat
LRR_8 PF13855 537 - 597 1.2e-15 Leucine rich repeat
LRR_14 PF23598 577 - 765 3e-09 Leucine-rich repeat region
LRR_8 PF13855 589 - 645 9.1e-15 Leucine rich repeat
LRR_8 PF13855 667 - 722 2.4e-06 Leucine rich repeat
LRR_8 PF13855 833 - 889 4.7e-07 Leucine rich repeat
LRR_14 PF23598 834 - 934 2.8e-08 Leucine-rich repeat region
LRR_8 PF13855 1104 - 1144 4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 111
AccIII TCCGGA 2 cut(s) 478, 3529
AciI CCGC 6 cut(s) 85, 219, 681, 2242, 3083, 3089
AclWI GGATC 6 cut(s) 1952, 2511, 2827, 3398, 3521, 3566
AcoI YGGCCR 5 cut(s) 82, 253, 1960, 1986, 3545
AcuI CTGAAG 1 cut(s) 2535
AfaI GTAC 7 cut(s) 285, 980, 1196, 1268, 1772, 2031, 3454
AfiI CCNNNNNNNGG 3 cut(s) 121, 1937, 3141
AjnI CCWGG 3 cut(s) 156, 2425, 3067
AloI GAACNNNNNNTCC 2 cut(s) 2421, 2453
Alw26I GTCTC 7 cut(s) 147, 204, 2342, 2638, 2796, 3559, 3649
AlwI GGATC 6 cut(s) 1952, 2511, 2827, 3398, 3521, 3566
AlwNI CAGNNNCTG 2 cut(s) 2033, 2828
Ama87I CYCGRG 2 cut(s) 596, 3556
Aor13HI TCCGGA 2 cut(s) 478, 3529
AoxI GGCC 5 cut(s) 82, 253, 1960, 1986, 3545
ApeKI GCWGC 2 cut(s) 349, 2489
Asp700I GAANNNNTTC 1 cut(s) 608
AspS9I GGNCC 2 cut(s) 367, 3071
AsuC2I CCSGG 1 cut(s) 2674
AsuHPI GGTGA 7 cut(s) 236, 305, 332, 551, 554, 2444, 3449
AsuII TTCGAA 2 cut(s) 2260, 2460
AvaI CYCGRG 2 cut(s) 596, 3556
AvaII GGWCC 2 cut(s) 367, 3071
BalI TGGCCA 2 cut(s) 1962, 1988
BanI GGYRCC 1 cut(s) 111
BarI GAAGNNNNNNTAC 2 cut(s) 2454, 2486
BbvI GCAGC 2 cut(s) 361, 2476
BccI CCATC 6 cut(s) 216, 3038, 3058, 3115, 3291, 3356
BceAI ACGGC 2 cut(s) 120, 3761
BciT130I CCWGG 3 cut(s) 158, 2427, 3069
BclI TGATCA 1 cut(s) 3738
BcnI CCSGG 1 cut(s) 2674
BcoDI GTCTC 7 cut(s) 147, 204, 2342, 2638, 2796, 3559, 3649
BfaI CTAG 7 cut(s) 116, 440, 2135, 2360, 2639, 3359, 3611
BfmI CTRYAG 2 cut(s) 621, 2691
BfuAI ACCTGC 1 cut(s) 183
BglII AGATCT 2 cut(s) 442, 2362
BisI GCNGC 3 cut(s) 85, 350, 2490
BlsI GCNGC 3 cut(s) 86, 351, 2491
BmcAI AGTACT 1 cut(s) 285
Bme1390I CCNGG 4 cut(s) 158, 2427, 2674, 3069
Bme18I GGWCC 2 cut(s) 367, 3071
BmeT110I CYCGRG 2 cut(s) 596, 3556
BmgT120I GGNCC 2 cut(s) 367, 3071
BmiI GGNNCC 5 cut(s) 113, 641, 2193, 2246, 2449
BmrFI CCNGG 4 cut(s) 158, 2427, 2674, 3069
BpmI CTGGAG 1 cut(s) 2448
Bpu14I TTCGAA 2 cut(s) 2260, 2460
BpuEI CTTGAG 4 cut(s) 556, 2353, 2991, 3187
BpuMI CCSGG 1 cut(s) 2674
Bsa29I ATCGAT 2 cut(s) 2014, 3393
BsaAI YACGTR 1 cut(s) 3724
BsaI GGTCTC 2 cut(s) 147, 2638
BsaJI CCNNGG 2 cut(s) 79, 562
BsaWI WCCGGW 3 cut(s) 478, 2006, 3529
BsaXI ACNNNNNCTCC 6 cut(s) 144, 174, 1988, 2018, 2421, 2451
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 1937, 3141
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 3 cut(s) 291, 2258, 3454
Bse3DI GCAATG 3 cut(s) 2420, 2668, 3568
BseAI TCCGGA 2 cut(s) 478, 3529
BseBI CCWGG 3 cut(s) 158, 2427, 3069
BseCI ATCGAT 2 cut(s) 2014, 3393
BseDI CCNNGG 2 cut(s) 79, 562
BseGI GGATG 7 cut(s) 136, 169, 227, 764, 1952, 2759, 3046
BseLI CCNNNNNNNGG 3 cut(s) 121, 1937, 3141
BseMI GCAATG 3 cut(s) 2420, 2668, 3568
BseMII CTCAG 7 cut(s) 385, 460, 629, 665, 2067, 2089, 2598
BseNI ACTGG 3 cut(s) 291, 2258, 3454
BseRI GAGGAG 1 cut(s) 762
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 2 cut(s) 361, 2476
BsgI GTGCAG 2 cut(s) 1610, 2115
Bsh1285I CGRYCG 3 cut(s) 85, 3397, 3544
BshFI GGCC 5 cut(s) 84, 255, 1962, 1988, 3547
BshNI GGYRCC 1 cut(s) 111
BshVI ATCGAT 2 cut(s) 2014, 3393
BsiEI CGRYCG 3 cut(s) 85, 3397, 3544
BsiHKCI CYCGRG 2 cut(s) 596, 3556
BsiSI CCGG 5 cut(s) 252, 479, 2007, 2673, 3530
BslFI GGGAC 4 cut(s) 2038, 2810, 3192, 3452
BslI CCNNNNNNNGG 3 cut(s) 121, 1937, 3141
BsmAI GTCTC 7 cut(s) 147, 204, 2342, 2638, 2796, 3559, 3649
BsmFI GGGAC 4 cut(s) 2038, 2810, 3192, 3452
BsmI GAATGC 1 cut(s) 3706
BsnI GGCC 5 cut(s) 84, 255, 1962, 1988, 3547
Bso31I GGTCTC 2 cut(s) 147, 2638
BsoBI CYCGRG 2 cut(s) 596, 3556
Bsp119I TTCGAA 2 cut(s) 2260, 2460
Bsp13I TCCGGA 2 cut(s) 478, 3529
BspACI CCGC 6 cut(s) 85, 219, 681, 2242, 3083, 3089
BspANI GGCC 5 cut(s) 84, 255, 1962, 1988, 3547
BspCNI CTCAG 7 cut(s) 384, 459, 628, 666, 2066, 2088, 2597
BspDI ATCGAT 2 cut(s) 2014, 3393
BspEI TCCGGA 2 cut(s) 478, 3529
BspLI GGNNCC 5 cut(s) 113, 641, 2193, 2246, 2449
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 6 cut(s) 1952, 2511, 2827, 3398, 3521, 3566
BspT104I TTCGAA 2 cut(s) 2260, 2460
BspT107I GGYRCC 1 cut(s) 111
BspTNI GGTCTC 2 cut(s) 147, 2638
BsrDI GCAATG 3 cut(s) 2420, 2668, 3568
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 3 cut(s) 291, 2258, 3454
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 79, 562
BssT1I CCWWGG 1 cut(s) 562
Bst2UI CCWGG 3 cut(s) 158, 2427, 3069
Bst4CI ACNGT 6 cut(s) 215, 2029, 2061, 2475, 2910, 3542
Bst6I CTCTTC 3 cut(s) 187, 919, 991
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBAI YACGTR 1 cut(s) 3724
BstBI TTCGAA 2 cut(s) 2260, 2460
BstC8I GCNNGC 3 cut(s) 141, 394, 2900
BstF5I GGATG 7 cut(s) 136, 169, 227, 764, 1952, 2759, 3046
BstMAI GTCTC 7 cut(s) 147, 204, 2342, 2638, 2796, 3559, 3649
BstMCI CGRYCG 3 cut(s) 85, 3397, 3544
BstMWI GCNNNNNNNGC 4 cut(s) 55, 140, 2138, 3589
BstNI CCWGG 3 cut(s) 158, 2427, 3069
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 4 cut(s) 156, 2425, 2672, 3067
BstSFI CTRYAG 2 cut(s) 621, 2691
BstV1I GCAGC 2 cut(s) 361, 2476
BstX2I RGATCY 5 cut(s) 442, 1944, 2362, 2503, 3571
BstYI RGATCY 5 cut(s) 442, 1944, 2362, 2503, 3571
BstZI CGGCCG 1 cut(s) 82
Bsu15I ATCGAT 2 cut(s) 2014, 3393
BsuRI GGCC 5 cut(s) 84, 255, 1962, 1988, 3547
BsuTUI ATCGAT 2 cut(s) 2014, 3393
BtsCI GGATG 7 cut(s) 136, 169, 227, 764, 1952, 2759, 3046
BtsI GCAGTG 3 cut(s) 134, 235, 387
BtsIMutI CAGTG 4 cut(s) 134, 235, 379, 387
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 3 cut(s) 141, 394, 2900
CaiI CAGNNNCTG 2 cut(s) 2033, 2828
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 367, 3071
ClaI ATCGAT 2 cut(s) 2014, 3393
CsiI ACCWGGT 1 cut(s) 156
Csp6I GTAC 7 cut(s) 284, 979, 1195, 1267, 1771, 2030, 3453
CviQI GTAC 7 cut(s) 284, 979, 1195, 1267, 1771, 2030, 3453
DraI TTTAAA 1 cut(s) 2568
EaeI YGGCCR 5 cut(s) 82, 253, 1960, 1986, 3545
EagI CGGCCG 1 cut(s) 82
Eam1104I CTCTTC 3 cut(s) 187, 919, 991
EarI CTCTTC 3 cut(s) 187, 919, 991
EciI GGCGGA 2 cut(s) 670, 3098
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 562
Eco31I GGTCTC 2 cut(s) 147, 2638
Eco32I GATATC 1 cut(s) 512
Eco47I GGWCC 2 cut(s) 367, 3071
Eco52I CGGCCG 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 2535
Eco88I CYCGRG 2 cut(s) 596, 3556
EcoRI GAATTC 1 cut(s) 2083
EcoRII CCWGG 3 cut(s) 156, 2425, 3067
EcoRV GATATC 1 cut(s) 512
EcoT14I CCWWGG 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 3685
ErhI CCWWGG 1 cut(s) 562
FalI AAGNNNNNCTT 2 cut(s) 682, 714
FaqI GGGAC 4 cut(s) 2038, 2810, 3192, 3452
FbaI TGATCA 1 cut(s) 3738
Fnu4HI GCNGC 3 cut(s) 85, 350, 2490
FokI GGATG 7 cut(s) 143, 176, 234, 771, 1939, 2746, 3033
Fsp4HI GCNGC 3 cut(s) 85, 350, 2490
FspBI CTAG 7 cut(s) 116, 440, 2135, 2360, 2639, 3359, 3611
GluI GCNGC 3 cut(s) 85, 350, 2490
GsuI CTGGAG 1 cut(s) 2448
HaeIII GGCC 5 cut(s) 84, 255, 1962, 1988, 3547
HapII CCGG 5 cut(s) 252, 479, 2007, 2673, 3530
HindIII AAGCTT 2 cut(s) 1981, 2810
HpaII CCGG 5 cut(s) 252, 479, 2007, 2673, 3530
HphI GGTGA 7 cut(s) 236, 305, 332, 551, 554, 2444, 3449
Hpy166II GTNNAC 1 cut(s) 235
Hpy8I GTNNAC 1 cut(s) 235
HpyCH4III ACNGT 6 cut(s) 215, 2029, 2061, 2475, 2910, 3542
HpyCH4IV ACGT 2 cut(s) 99, 3723
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 140, 2138, 3589
HpySE526I ACGT 2 cut(s) 99, 3723
Kpn2I TCCGGA 2 cut(s) 478, 3529
Ksp22I TGATCA 1 cut(s) 3738
LmnI GCTCC 5 cut(s) 468, 481, 645, 732, 2895
Lsp1109I GCAGC 2 cut(s) 361, 2476
MabI ACCWGGT 1 cut(s) 156
MaeI CTAG 7 cut(s) 116, 440, 2135, 2360, 2639, 3359, 3611
MaeII ACGT 2 cut(s) 99, 3723
MfeI CAATTG 3 cut(s) 42, 634, 2204
MflI RGATCY 5 cut(s) 442, 1944, 2362, 2503, 3571
MlsI TGGCCA 2 cut(s) 1962, 1988
MluNI TGGCCA 2 cut(s) 1962, 1988
MlyI GAGTC 5 cut(s) 240, 523, 2065, 2344, 3651
Mox20I TGGCCA 2 cut(s) 1962, 1988
Mph1103I ATGCAT 1 cut(s) 3685
MroI TCCGGA 2 cut(s) 478, 3529
MroXI GAANNNNTTC 1 cut(s) 608
MscI TGGCCA 2 cut(s) 1962, 1988
MslI CAYNNNNRTG 3 cut(s) 30, 276, 2911
Msp20I TGGCCA 2 cut(s) 1962, 1988
MspI CCGG 5 cut(s) 252, 479, 2007, 2673, 3530
MspR9I CCNGG 4 cut(s) 158, 2427, 2674, 3069
MunI CAATTG 3 cut(s) 42, 634, 2204
Mva1269I GAATGC 1 cut(s) 3706
MvaI CCWGG 3 cut(s) 158, 2427, 3069
MwoI GCNNNNNNNGC 4 cut(s) 55, 140, 2138, 3589
NciI CCSGG 1 cut(s) 2674
NlaIV GGNNCC 5 cut(s) 113, 641, 2193, 2246, 2449
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 3 cut(s) 100, 374, 526
NsiI ATGCAT 1 cut(s) 3685
NspI RCATGY 1 cut(s) 29
NspV TTCGAA 2 cut(s) 2260, 2460
PaeR7I CTCGAG 1 cut(s) 3556
PcsI WCGNNNNNNNCGW 1 cut(s) 3394
PctI GAATGC 1 cut(s) 3706
PdmI GAANNNNTTC 1 cut(s) 608
PfoI TCCNGGA 1 cut(s) 2672
PkrI GCNGC 3 cut(s) 86, 351, 2491
Ple19I CGATCG 1 cut(s) 3397
PleI GAGTC 5 cut(s) 239, 523, 2065, 2343, 3650
PpsI GAGTC 5 cut(s) 239, 523, 2065, 2343, 3650
Ppu21I YACGTR 1 cut(s) 3724
Psp6I CCWGG 3 cut(s) 156, 2425, 3067
PspGI CCWGG 3 cut(s) 156, 2425, 3067
PspN4I GGNNCC 5 cut(s) 113, 641, 2193, 2246, 2449
PspPI GGNCC 2 cut(s) 367, 3071
PstNI CAGNNNCTG 2 cut(s) 2033, 2828
PsuI RGATCY 5 cut(s) 442, 1944, 2362, 2503, 3571
PvuI CGATCG 1 cut(s) 3397
RsaI GTAC 7 cut(s) 285, 980, 1196, 1268, 1772, 2031, 3454
RsaNI GTAC 7 cut(s) 284, 979, 1195, 1267, 1771, 2030, 3453
RseI CAYNNNNRTG 3 cut(s) 30, 276, 2911
SatI GCNGC 3 cut(s) 85, 350, 2490
Sau96I GGNCC 2 cut(s) 367, 3071
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 5 cut(s) 240, 523, 2065, 2344, 3651
ScrFI CCNGG 4 cut(s) 158, 2427, 2674, 3069
SexAI ACCWGGT 1 cut(s) 156
SfcI CTRYAG 2 cut(s) 621, 2691
Sfr274I CTCGAG 1 cut(s) 3556
SfuI TTCGAA 2 cut(s) 2260, 2460
SinI GGWCC 2 cut(s) 367, 3071
SlaI CTCGAG 1 cut(s) 3556
SmiMI CAYNNNNRTG 3 cut(s) 30, 276, 2911
SmlI CTYRAG 5 cut(s) 535, 2332, 3006, 3202, 3556
SmoI CTYRAG 5 cut(s) 535, 2332, 3006, 3202, 3556
SsiI CCGC 6 cut(s) 85, 219, 681, 2242, 3083, 3089
SspI AATATT 2 cut(s) 362, 864
SspMI CTAG 7 cut(s) 116, 440, 2135, 2360, 2639, 3359, 3611
StyD4I CCNGG 4 cut(s) 156, 2425, 2672, 3067
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 6 cut(s) 215, 2029, 2061, 2475, 2910, 3542
TaiI ACGT 2 cut(s) 102, 3726
TatI WGTACW 1 cut(s) 283
TauI GCSGC 1 cut(s) 87
TscAI CASTG 4 cut(s) 141, 242, 379, 394
TseFI GTSAC 3 cut(s) 100, 374, 526
TseI GCWGC 2 cut(s) 349, 2489
Tsp45I GTSAC 3 cut(s) 100, 374, 526
TspRI CASTG 4 cut(s) 141, 242, 379, 394
VpaK11BI GGWCC 2 cut(s) 367, 3071
XceI RCATGY 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 3556
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 7 cut(s) 116, 440, 2135, 2360, 2639, 3359, 3611
ZrmI AGTACT 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 3685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.