Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001613

Physical Location & Seq

Genomic Coordinates Forward (+)

16128199 .. 16134345

Gene Structure 6147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00296020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2781 bp

ATGTTGGCCCTAGACTTGGCTACAAGTGTTGCATCTGCTCCTGCTTCAGAAGTCATTTCTCAAATGGTAGAGGCCATTTTCGAAACCGTAGTTGCTTCCAGGGACGTCCTTGTTAAGAAGGACACTTTTAAGGAACTTGCAACTTATTTGGAAAGGATTGTCCCCATCTTAAGAGAGTTGAATAAGAAAACAGTTTCGCATTCTGAGAGCTTAAACAATGTTCTGGAGATCCTTAACCGAGAAATAAGATCTGCGAAGACAGTGACTATCGAGTGCAGCAAGAGAAACAAAATGTATCTCTTAATGAATTGCCGAACAATAGTTAACCACCTACAGAATACTATGGGAGAGATCAGTCGTGCTCTAGGTCTTCTTCCCCTGACCTCTCTAGATCTTTCGTCTGGCATAGTTGAAGAAATTGGTAAGGTTCGTGACAATATGCTTGGAGCTGAGTTCAGGGCAGCTATAGCAGAAGAAGAGATTCTGAACAAAATTGAGACTGGAATCCAGGAGAGGAATATGGATCGTTCATATGCCAATAGTTTGTTGGTTCAAATAGCAGAGGCAGTTGGAATCTCAACTGAGAGGTCAGCATTGAAGAAGGAATTAGAGGAATTCAGAAGTGAGATAGAAAATGCTCGACTAAGGAAAGACCAGGCAGAAGCTATACAGATGGAACAGATAATTGCTTTATTAGAAAGAGCTGATGCAGCTTCATCTCCTGAGGAGAAAGAAAGGAAATATTTCACTAAGCGAAGATCTTTGGGCAGTCAACCATTGGAACCACTTCAGTCATTTCATTGCCCAATCACTGGGGATGTTATGGAGGACCCTGTGGAAACTTCTTCCGGCCAAACATTTGAGAGGACTGCTATAGAAAAGTGGTTAGCTGATGGGAATAGTTTGTGTCCGCTGACCAGGACTCCTTTAGACACATCAATTTTACGGCCCAATAAAACTCTGCGGCAATCAATAGAAGAATGGAAAGATAGAAATACCATGATTATGATTGCTTCCATGAAATCAAAACTCAAGTCTGAAGACGAGGAGGAAGTGCTCCATTGCCTTAAAGAACTACTAGATCTCTGTAAACAAAGAGACCTACATCAGGAATGGGTCTTATTGGAGGACTATATACCTATCCTCCTTCAACTTCTTGGTGTAAGAAAACCTGAGATAAGGAATCAAGTTCTTGTCAACCTTTTCATTTTGGTGAAGGACAGTGATGATGCCAAGGAAAGAACTGCCAGAGCTGATAATGGCATTGAACTTATTGTTCGGTCACTTGGGCGCCGTGTCGAGGAAAGGAAGCTAGCAGTAGCATTACTATTGGAATTGTCAAAGTATAATTTGATAAGAGACAAAATTGGGAAGGTTCAAGGTTCCATACTCCTATTAGTTACCATGTCCAACAGTGATGATAATCAAGCTGCCAGAGACGCACGAGAGCTGTTGGAGAATCTGTCATTCTCAGACCAAAATGTTATACAAATGGCAAAGGCAAATTATTTTAAACATTTGCTGAAGCGGCTTTCTACAGGACCAGAAGATGTAAAAGTGGCCATGGCATCAAATTTGGCAGATATGGAGTTGACTGACCACAATAAAGAGTCTTTGCTTGAAGGGGGAGTACTGGGTCCACTTCTTGATATGGTTTCACATGGTGACATTCCGATTAAAAACGGGGCTGTTAGAGCTCTTAGAAACCTCTCTAGCATACCTAAAAATGGTCTGCAGATGATTAGAGCAGGTGCAGAACGCCCATTACTTGACCTTCTTTTTGATCATAGCTCATCATTGTCAAGTTTGCGTGCACATTCAGCAGCCACAATCATGCACCTAGCCAGGTCAGTGGTGTTTCAAGAATCCAGCCAGACACCTGCTTCTTTTCTGGAATCGGATGAAGATATTTCCAAGCTTTTGTATTTGATTAACCTAACGGGGCCTGATGTACAGCGCAGCATCATTCTCACCTTCCACACTTTGTGTCAATCCCCCTCTGCTATAAACATCAAGACCAAGTTGATAGAGTCCTCAGCTGTGCAAGTATTGACTCAATTGATGGAGCACGACAACCCAAATCTACGAGCAAATGCAGTAAAGCTGCTCTCTTGCTTAATAGAAGGTGGCAGTGAAGCCATCAGCATAAAGGAGCATGTGGGTCAGAAGTGCATTGAGACTATAGTCAAGATTATCAAATCTTCTAGTGATGAAGACGAGATTGCTTCTGCAATGGGTGTTATCTCTAATCTTCCAGAAATTCCCCAGATCACAGAGTGGTTTGTCGATGCTGGGGTACTACCTGTCATACTCAATTTCCTCCGGAACGGCAAGCAGAATGGTCCCCATCAAAATCAGGTGATAGAGAATGCTGTTGGAGCCATTTGCCGTTTCACTGTTCCATCAAACTTGGAATGGCAACGAAGTGCAGCTGAAGCTGGCATTATACCCTTGTTTGTACAGTTGCTGGAGTCTGGAACCTCCTTGACTAAAACACGTGCAGCCTTATCTCTTTCTCGATTTTCACAGAGTTCGCCCAGGTTAACCAGGTCATTACCTAAGCGCAGAGGGCTATGGTGCTTCTCACCCCCACCAGAAACTGGGTGCCCTGTTCATGGAGGAATCTGTGGCATTGTTTCATCATTTTGCCTCGTGGAGGCTGATGCAGTGAGACCGCTAGTCCGGATGCTTGGGGAACCTGATCCTGAAGCTTGCGAGGCTTCTTTAGATGCTTTAGTAACTTTAATTGAAGTTTGCAGGAGAAGGCTCTACATGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_2 U-box

Protein Analysis

926

Amino Acids

102.92

Weight (kDa)

5.69

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	34 - 143	7.3e-06	MCAfunc domain
U-box	PF04564	266 - 332	1.4e-17	U-box domain
ARM_ARMC5	PF24768	526 - 666	2.9e-06	ARMC5
ARM_ARMC5	PF24768	672 - 827	3e-06	ARMC5
ARM_PUB	PF25598	673 - 774	2e-06	Plant U-box protein ARM repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001613)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g17110 FvH4_7g32250
malus_domestica	MD01G1085600.v1.1 MD07G1154800.v1.1 MD07G1295700.v1.1
prunus_persica	Prupe.2G193400_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1 Prupe.2G315200_v2.0.a1
pyrus_communis	pycom07g15200 pycom07g26840
rosa_chinensis	RchiOBHm_Chr1g0360521 RchiOBHm_Chr1g0381931
rosa_laevigata	RLG00000026199 RLG00000027799
rosa_multiflora	Rmu_sc0010238.1_g000006 Rmu_ssc0000337.1_g000005
rosa_roxburghii	Rroxscaffold_4G00278330 Rroxscaffold_4G00296020
rosa_rugosa	Rorug01G0279400 Rorug01G0279500 Rorug01G0279600 Rorug01G0279700 Rorug01G0432300
rosa_samantha	Rh1AG291700 Rh1AG455500 Rh1BG256700 Rh1BG412700 Rh1CG274400 Rh1CG427500 Rh1DG286500 Rh1DG445000
rosa_wichuraiana	Rw1G025840 Rw1G041360 Rw1G041490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1739, 1888
AatII	GACGTC	1 cut(s)	108
Acc36I	ACCTGC	2 cut(s)	1739, 1888
AccB1I	GGYRCC	2 cut(s)	1290, 2604
AccB7I	CCANNNNNTGG	2 cut(s)	812, 2600
AccIII	TCCGGA	2 cut(s)	2322, 2682
AciI	CCGC	4 cut(s)	911, 964, 1528, 2675
AclWI	GGATC	3 cut(s)	223, 531, 2696
AcoI	YGGCCR	2 cut(s)	850, 1560
AcsI	RAATTY	3 cut(s)	614, 1573, 2259
AcuI	CTGAAG	6 cut(s)	30, 773, 1059, 1544, 2454, 2727
AcvI	CACGTG	1 cut(s)	2498
AcyI	GRCGYC	2 cut(s)	105, 1291
AdeI	CACNNNGTG	3 cut(s)	1664, 1986, 2277
AfaI	GTAC	4 cut(s)	1632, 1953, 2298, 2460
AfiI	CCNNNNNNNGG	8 cut(s)	16, 812, 1108, 1300, 1727, 2600, 2615, 2656
AflII	CTTAAG	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	2495
AhdI	GACNNNNNGTC	1 cut(s)	2678
AjnI	CCWGG	7 cut(s)	98, 507, 654, 917, 1844, 2537, 2546
Alw21I	GWGCWC	5 cut(s)	364, 1059, 1699, 1816, 2070
Alw26I	GTCTC	6 cut(s)	491, 1092, 1353, 1431, 2171, 2665
Alw44I	GTGCAC	1 cut(s)	1812
AlwI	GGATC	3 cut(s)	223, 531, 2696
AlwNI	CAGNNNCTG	2 cut(s)	2467, 2600
Aor13HI	TCCGGA	2 cut(s)	2322, 2682
AoxI	GGCC	6 cut(s)	6, 72, 850, 947, 1560, 1943
ApaLI	GTGCAC	1 cut(s)	1812
ApeKI	GCWGC	9 cut(s)	276, 461, 710, 1430, 1823, 1959, 2104, 2429, 2501
ApoI	RAATTY	3 cut(s)	614, 1573, 2259
ArsI	GACNNNNNNTTYG	4 cut(s)	1019, 1051, 1763, 1795
Asp700I	GAANNNNTTC	3 cut(s)	480, 743, 786
AspLEI	GCGC	3 cut(s)	1293, 1959, 2565
AspS9I	GGNCC	7 cut(s)	7, 829, 948, 1541, 1637, 1943, 2342
AsuHPI	GGTGA	5 cut(s)	1225, 1676, 1963, 2371, 2577
AsuII	TTCGAA	1 cut(s)	81
AsuNHI	GCTAGC	1 cut(s)	1312
AvaII	GGWCC	4 cut(s)	829, 1541, 1637, 2342
AxyI	CCTNAGG	1 cut(s)	723
BaeGI	GKGCMC	2 cut(s)	1816, 2609
BalI	TGGCCA	1 cut(s)	1562
BanI	GGYRCC	2 cut(s)	1290, 2604
BanII	GRGCYC	1 cut(s)	1699
BarI	GAAGNNNNNNTAC	2 cut(s)	1614, 1646
BauI	CACGAG	2 cut(s)	1443, 2651
BbrPI	CACGTG	1 cut(s)	2498
BbsI	GAAGAC	4 cut(s)	263, 362, 1047, 2220
Bbv12I	GWGCWC	5 cut(s)	364, 1059, 1699, 1816, 2070
BbvCI	CCTCAGC	1 cut(s)	2035
BbvI	GCAGC	9 cut(s)	288, 473, 722, 1417, 1835, 1971, 2091, 2441, 2513
BccI	CCATC	7 cut(s)	173, 667, 887, 2056, 2147, 2355, 2410
BceAI	ACGGC	4 cut(s)	962, 1278, 2344, 2373
BciT130I	CCWGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
BclI	TGATCA	1 cut(s)	1783
BcoDI	GTCTC	6 cut(s)	491, 1092, 1353, 1431, 2171, 2665
BfmI	CTRYAG	6 cut(s)	332, 465, 873, 1536, 1733, 2181
BfoI	RGCGCY	1 cut(s)	1294
BfrI	CTTAAG	1 cut(s)	169
BfuAI	ACCTGC	2 cut(s)	1739, 1888
BglII	AGATCT	4 cut(s)	248, 391, 758, 1081
BmcAI	AGTACT	1 cut(s)	1632
Bme1390I	CCNGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
Bme18I	GGWCC	4 cut(s)	829, 1541, 1637, 2342
BmeRI	GACNNNNNGTC	1 cut(s)	2678
BmgT120I	GGNCC	7 cut(s)	7, 829, 948, 1541, 1637, 1943, 2342
BmrFI	CCNGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
BmrI	ACTGGG	3 cut(s)	822, 1643, 2610
BmsI	GCATC	9 cut(s)	41, 697, 1219, 1577, 1971, 2278, 2653, 2676, 2719
BmtI	GCTAGC	1 cut(s)	1316
BmuI	ACTGGG	3 cut(s)	822, 1643, 2610
BoxI	GACNNNNGTC	1 cut(s)	2183
BpiI	GAAGAC	4 cut(s)	263, 362, 1047, 2220
BpmI	CTGGAG	2 cut(s)	245, 2489
Bpu10I	CCTNAGC	2 cut(s)	2035, 2559
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	1 cut(s)	1016
BsaAI	YACGTR	1 cut(s)	2498
BsaBI	GATNNNNATC	1 cut(s)	1422
BsaHI	GRCGYC	2 cut(s)	105, 1291
BsaI	GGTCTC	2 cut(s)	1092, 2665
BsaJI	CCNNGG	4 cut(s)	99, 1233, 1563, 2537
BsaWI	WCCGGW	2 cut(s)	2322, 2682
BsaXI	ACNNNNNCTCC	6 cut(s)	907, 937, 1128, 1158, 1448, 1478
Bsc4I	CCNNNNNNNGG	8 cut(s)	16, 812, 1108, 1300, 1727, 2600, 2615, 2656
Bse1I	ACTGG	4 cut(s)	505, 817, 1638, 2605
Bse21I	CCTNAGG	1 cut(s)	723
Bse3DI	GCAATG	3 cut(s)	799, 1060, 2238
Bse8I	GATNNNNATC	1 cut(s)	1422
BseAI	TCCGGA	2 cut(s)	2322, 2682
BseBI	CCWGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
BseDI	CCNNGG	4 cut(s)	99, 1233, 1563, 2537
BseGI	GGATG	3 cut(s)	823, 1906, 2691
BseJI	GATNNNNATC	1 cut(s)	1422
BseLI	CCNNNNNNNGG	8 cut(s)	16, 812, 1108, 1300, 1727, 2600, 2615, 2656
BseMI	GCAATG	3 cut(s)	799, 1060, 2238
BseMII	CTCAG	7 cut(s)	195, 441, 573, 714, 1164, 1485, 2049
BseNI	ACTGG	4 cut(s)	505, 817, 1638, 2605
BseRI	GAGGAG	2 cut(s)	740, 1061
BseSI	GKGCMC	2 cut(s)	1816, 2609
BseXI	GCAGC	9 cut(s)	288, 473, 722, 1417, 1835, 1971, 2091, 2441, 2513
BseYI	CCCAGC	1 cut(s)	2291
BsgI	GTGCAG	4 cut(s)	295, 1773, 2448, 2520
BshFI	GGCC	6 cut(s)	8, 74, 852, 949, 1562, 1945
BshNI	GGYRCC	2 cut(s)	1290, 2604
BsiHKAI	GWGCWC	5 cut(s)	364, 1059, 1699, 1816, 2070
BsiSI	CCGG	3 cut(s)	849, 2323, 2683
BslFI	GGGAC	3 cut(s)	116, 146, 2328
BslI	CCNNNNNNNGG	8 cut(s)	16, 812, 1108, 1300, 1727, 2600, 2615, 2656
BsmAI	GTCTC	6 cut(s)	491, 1092, 1353, 1431, 2171, 2665
BsmBI	CGTCTC	1 cut(s)	1431
BsmFI	GGGAC	3 cut(s)	116, 146, 2328
BsmI	GAATGC	2 cut(s)	199, 2374
BsnI	GGCC	6 cut(s)	8, 74, 852, 949, 1562, 1945
Bso31I	GGTCTC	2 cut(s)	1092, 2665
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	6 cut(s)	364, 1059, 1699, 1816, 2070, 2609
Bsp13I	TCCGGA	2 cut(s)	2322, 2682
Bsp1407I	TGTACA	2 cut(s)	1951, 2458
Bsp19I	CCATGG	1 cut(s)	1563
BspACI	CCGC	4 cut(s)	911, 964, 1528, 2675
BspANI	GGCC	6 cut(s)	8, 74, 852, 949, 1562, 1945
BspCNI	CTCAG	7 cut(s)	196, 442, 574, 715, 1165, 1484, 2048
BspEI	TCCGGA	2 cut(s)	2322, 2682
BspMAI	CTGCAG	1 cut(s)	1737
BspMI	ACCTGC	2 cut(s)	1739, 1888
BspOI	GCTAGC	1 cut(s)	1316
BspPI	GGATC	3 cut(s)	223, 531, 2696
BspT104I	TTCGAA	1 cut(s)	81
BspT107I	GGYRCC	2 cut(s)	1290, 2604
BspTI	CTTAAG	1 cut(s)	169
BspTNI	GGTCTC	2 cut(s)	1092, 2665
BsrDI	GCAATG	3 cut(s)	799, 1060, 2238
BsrGI	TGTACA	2 cut(s)	1951, 2458
BsrI	ACTGG	4 cut(s)	505, 817, 1638, 2605
BssECI	CCNNGG	4 cut(s)	99, 1233, 1563, 2537
BssNI	GRCGYC	2 cut(s)	105, 1291
BssSI	CACGAG	2 cut(s)	1443, 2651
BssT1I	CCWWGG	2 cut(s)	1233, 1563
Bst2BI	CACGAG	2 cut(s)	1443, 2651
Bst2UI	CCWGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
Bst4CI	ACNGT	7 cut(s)	88, 193, 262, 1223, 1415, 2398, 2463
Bst6I	CTCTTC	1 cut(s)	471
BstACI	GRCGYC	2 cut(s)	105, 1291
BstAFI	CTTAAG	1 cut(s)	169
BstAUI	TGTACA	2 cut(s)	1951, 2458
BstBAI	YACGTR	1 cut(s)	2498
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	5 cut(s)	1314, 1812, 2333, 2440, 2713
BstDSI	CCRYGG	1 cut(s)	1563
BstENI	CCTNNNNNAGG	2 cut(s)	1106, 2654
BstF5I	GGATG	3 cut(s)	823, 1906, 2691
BstH2I	RGCGCY	1 cut(s)	1294
BstHHI	GCGC	3 cut(s)	1293, 1959, 2565
BstMAI	GTCTC	6 cut(s)	491, 1092, 1353, 1431, 2171, 2665
BstNI	CCWGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
BstNSI	RCATGY	2 cut(s)	2159, 2776
BstPAI	GACNNNNGTC	1 cut(s)	2183
BstSCI	CCNGG	7 cut(s)	98, 507, 654, 917, 1844, 2537, 2546
BstSFI	CTRYAG	6 cut(s)	332, 465, 873, 1536, 1733, 2181
BstSLI	GKGCMC	2 cut(s)	1816, 2609
BstV1I	GCAGC	9 cut(s)	288, 473, 722, 1417, 1835, 1971, 2091, 2441, 2513
BstV2I	GAAGAC	4 cut(s)	263, 362, 1047, 2220
BstX2I	RGATCY	5 cut(s)	228, 248, 391, 758, 1081
BstXI	CCANNNNNNTGG	1 cut(s)	1852
BstYI	RGATCY	5 cut(s)	228, 248, 391, 758, 1081
Bsu36I	CCTNAGG	1 cut(s)	723
BsuRI	GGCC	6 cut(s)	8, 74, 852, 949, 1562, 1945
BtgI	CCRYGG	1 cut(s)	1563
BtsCI	GGATG	3 cut(s)	823, 1906, 2691
BtsI	GCAGTG	2 cut(s)	2137, 2673
BtsIMutI	CAGTG	8 cut(s)	267, 810, 1228, 1420, 1857, 2137, 2394, 2673
BveI	ACCTGC	2 cut(s)	1739, 1888
Cac8I	GCNNGC	5 cut(s)	1314, 1812, 2333, 2440, 2713
CaiI	CAGNNNCTG	2 cut(s)	2467, 2600
CfoI	GCGC	3 cut(s)	1293, 1959, 2565
Cfr13I	GGNCC	7 cut(s)	7, 829, 948, 1541, 1637, 1943, 2342
CseI	GACGC	1 cut(s)	1448
CsiI	ACCWGGT	1 cut(s)	2546
Csp6I	GTAC	4 cut(s)	1631, 1952, 2297, 2459
CviAII	CATG	9 cut(s)	1000, 1018, 1405, 1564, 1661, 1834, 2156, 2615, 2773
CviQI	GTAC	4 cut(s)	1631, 1952, 2297, 2459
DinI	GGCGCC	1 cut(s)	1292
DraI	TTTAAA	1 cut(s)	1513
DraIII	CACNNNGTG	3 cut(s)	1664, 1986, 2277
DriI	GACNNNNNGTC	1 cut(s)	2678
EaeI	YGGCCR	2 cut(s)	850, 1560
Eam1104I	CTCTTC	1 cut(s)	471
Eam1105I	GACNNNNNGTC	1 cut(s)	2678
EarI	CTCTTC	1 cut(s)	471
Ecl136II	GAGCTC	1 cut(s)	1697
Eco130I	CCWWGG	2 cut(s)	1233, 1563
Eco24I	GRGCYC	1 cut(s)	1699
Eco31I	GGTCTC	2 cut(s)	1092, 2665
Eco47I	GGWCC	4 cut(s)	829, 1541, 1637, 2342
Eco53kI	GAGCTC	1 cut(s)	1697
Eco57I	CTGAAG	6 cut(s)	30, 773, 1059, 1544, 2454, 2727
Eco72I	CACGTG	1 cut(s)	2498
Eco81I	CCTNAGG	1 cut(s)	723
EcoICRI	GAGCTC	1 cut(s)	1697
EcoNI	CCTNNNNNAGG	2 cut(s)	1106, 2654
EcoO109I	RGGNCCY	2 cut(s)	829, 1943
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	7 cut(s)	98, 507, 654, 917, 1844, 2537, 2546
EcoT14I	CCWWGG	2 cut(s)	1233, 1563
EcoT38I	GRGCYC	1 cut(s)	1699
EgeI	GGCGCC	1 cut(s)	1292
EheI	GGCGCC	1 cut(s)	1292
ErhI	CCWWGG	2 cut(s)	1233, 1563
Esp3I	CGTCTC	1 cut(s)	1431
FaeI	CATG	9 cut(s)	1003, 1021, 1408, 1567, 1664, 1837, 2159, 2618, 2776
FaqI	GGGAC	3 cut(s)	116, 146, 2328
FatI	CATG	9 cut(s)	999, 1017, 1404, 1563, 1660, 1833, 2155, 2614, 2772
FauNDI	CATATG	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	1783
FokI	GGATG	3 cut(s)	830, 1913, 2698
FriOI	GRGCYC	1 cut(s)	1699
GlaI	GCGC	3 cut(s)	1292, 1958, 2564
GsaI	CCCAGC	1 cut(s)	2295
GsuI	CTGGAG	2 cut(s)	245, 2489
HaeII	RGCGCY	1 cut(s)	1294
HaeIII	GGCC	6 cut(s)	8, 74, 852, 949, 1562, 1945
HapII	CCGG	3 cut(s)	849, 2323, 2683
HgaI	GACGC	1 cut(s)	1448
HhaI	GCGC	3 cut(s)	1293, 1959, 2565
Hin1I	GRCGYC	2 cut(s)	105, 1291
Hin1II	CATG	9 cut(s)	1003, 1021, 1408, 1567, 1664, 1837, 2159, 2618, 2776
Hin6I	GCGC	3 cut(s)	1291, 1957, 2563
HinP1I	GCGC	3 cut(s)	1291, 1957, 2563
HincII	GTYRAC	5 cut(s)	325, 773, 1198, 1593, 2544
HindII	GTYRAC	5 cut(s)	325, 773, 1198, 1593, 2544
HindIII	AAGCTT	2 cut(s)	1916, 2709
HpaI	GTTAAC	2 cut(s)	325, 2544
HpaII	CCGG	3 cut(s)	849, 2323, 2683
HphI	GGTGA	5 cut(s)	1225, 1676, 1963, 2371, 2577
Hpy166II	GTNNAC	8 cut(s)	325, 773, 1091, 1198, 1593, 1640, 1814, 2544
Hpy188I	TCNGA	9 cut(s)	49, 205, 486, 620, 1039, 1474, 1674, 1900, 2166
Hpy8I	GTNNAC	8 cut(s)	325, 773, 1091, 1198, 1593, 1640, 1814, 2544
HpyCH4III	ACNGT	7 cut(s)	88, 193, 262, 1223, 1415, 2398, 2463
HpyCH4IV	ACGT	2 cut(s)	105, 2497
HpySE526I	ACGT	2 cut(s)	105, 2497
Hsp92I	GRCGYC	2 cut(s)	105, 1291
Hsp92II	CATG	9 cut(s)	1003, 1021, 1408, 1567, 1664, 1837, 2159, 2618, 2776
HspAI	GCGC	3 cut(s)	1291, 1957, 2563
KasI	GGCGCC	1 cut(s)	1290
Kpn2I	TCCGGA	2 cut(s)	2322, 2682
Ksp22I	TGATCA	1 cut(s)	1783
KspAI	GTTAAC	2 cut(s)	325, 2544
LmnI	GCTCC	6 cut(s)	43, 446, 1062, 2065, 2152, 2378
Lsp1109I	GCAGC	9 cut(s)	288, 473, 722, 1417, 1835, 1971, 2091, 2441, 2513
LweI	GCATC	9 cut(s)	41, 697, 1219, 1577, 1971, 2278, 2653, 2676, 2719
MabI	ACCWGGT	1 cut(s)	2546
MaeII	ACGT	2 cut(s)	105, 2497
MaeIII	GTNAC	6 cut(s)	262, 431, 1281, 1399, 1664, 2737
MfeI	CAATTG	1 cut(s)	2057
MflI	RGATCY	5 cut(s)	228, 248, 391, 758, 1081
MhlI	GDGCHC	6 cut(s)	364, 1059, 1699, 1816, 2070, 2609
MlsI	TGGCCA	1 cut(s)	1562
MluNI	TGGCCA	1 cut(s)	1562
Mly113I	GGCGCC	1 cut(s)	1291
MlyI	GAGTC	5 cut(s)	916, 1619, 2039, 2047, 2480
MmeI	TCCRAC	4 cut(s)	550, 1434, 1434, 2356
Mox20I	TGGCCA	1 cut(s)	1562
MroI	TCCGGA	2 cut(s)	2322, 2682
MroXI	GAANNNNTTC	3 cut(s)	480, 743, 786
MscI	TGGCCA	1 cut(s)	1562
MslI	CAYNNNNRTG	3 cut(s)	1004, 1211, 1832
Msp20I	TGGCCA	1 cut(s)	1562
MspA1I	CMGCKG	3 cut(s)	913, 2039, 2432
MspCI	CTTAAG	1 cut(s)	169
MspI	CCGG	3 cut(s)	849, 2323, 2683
MspR9I	CCNGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
MunI	CAATTG	1 cut(s)	2057
Mva1269I	GAATGC	2 cut(s)	199, 2374
MvaI	CCWGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
NarI	GGCGCC	1 cut(s)	1291
NcoI	CCATGG	1 cut(s)	1563
NdeI	CATATG	1 cut(s)	532
NheI	GCTAGC	1 cut(s)	1312
NlaIII	CATG	9 cut(s)	1003, 1021, 1408, 1567, 1664, 1837, 2159, 2618, 2776
NmuCI	GTSAC	4 cut(s)	262, 431, 1281, 1664
NspI	RCATGY	2 cut(s)	2159, 2776
NspV	TTCGAA	1 cut(s)	81
PaqCI	CACCTGC	2 cut(s)	1739, 1888
PctI	GAATGC	2 cut(s)	199, 2374
PdmI	GAANNNNTTC	3 cut(s)	480, 743, 786
PfeI	GAWTC	8 cut(s)	481, 504, 573, 1183, 1459, 1865, 1895, 2622
PflMI	CCANNNNNTGG	2 cut(s)	812, 2600
PfoI	TCCNGGA	1 cut(s)	507
PleI	GAGTC	5 cut(s)	916, 1618, 2038, 2047, 2479
PluTI	GGCGCC	1 cut(s)	1294
PmaCI	CACGTG	1 cut(s)	2498
PmlI	CACGTG	1 cut(s)	2498
PpsI	GAGTC	5 cut(s)	916, 1618, 2038, 2047, 2479
Ppu21I	YACGTR	1 cut(s)	2498
PpuMI	RGGWCCY	1 cut(s)	829
PshAI	GACNNNNGTC	1 cut(s)	2183
Psp124BI	GAGCTC	1 cut(s)	1699
Psp5II	RGGWCCY	1 cut(s)	829
Psp6I	CCWGG	7 cut(s)	98, 507, 654, 917, 1844, 2537, 2546
PspCI	CACGTG	1 cut(s)	2498
PspFI	CCCAGC	1 cut(s)	2291
PspGI	CCWGG	7 cut(s)	98, 507, 654, 917, 1844, 2537, 2546
PspPI	GGNCC	7 cut(s)	7, 829, 948, 1541, 1637, 1943, 2342
PspPPI	RGGWCCY	1 cut(s)	829
PsrI	GAACNNNNNNTAC	2 cut(s)	1749, 1781
PstI	CTGCAG	1 cut(s)	1737
PstNI	CAGNNNCTG	2 cut(s)	2467, 2600
PsuI	RGATCY	5 cut(s)	228, 248, 391, 758, 1081
PvuII	CAGCTG	2 cut(s)	2039, 2432
RsaI	GTAC	4 cut(s)	1632, 1953, 2298, 2460
RsaNI	GTAC	4 cut(s)	1631, 1952, 2297, 2459
RseI	CAYNNNNRTG	3 cut(s)	1004, 1211, 1832
SacI	GAGCTC	1 cut(s)	1699
Sau96I	GGNCC	7 cut(s)	7, 829, 948, 1541, 1637, 1943, 2342
ScaI	AGTACT	1 cut(s)	1632
SchI	GAGTC	5 cut(s)	916, 1619, 2039, 2047, 2480
ScrFI	CCNGG	7 cut(s)	100, 509, 656, 919, 1846, 2539, 2548
SduI	GDGCHC	6 cut(s)	364, 1059, 1699, 1816, 2070, 2609
SexAI	ACCWGGT	1 cut(s)	2546
SfaNI	GCATC	9 cut(s)	41, 697, 1219, 1577, 1971, 2278, 2653, 2676, 2719
SfcI	CTRYAG	6 cut(s)	332, 465, 873, 1536, 1733, 2181
SfoI	GGCGCC	1 cut(s)	1292
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	4 cut(s)	829, 1541, 1637, 2342
SmiMI	CAYNNNNRTG	3 cut(s)	1004, 1211, 1832
SmlI	CTYRAG	2 cut(s)	169, 1031
SmoI	CTYRAG	2 cut(s)	169, 1031
SsiI	CCGC	4 cut(s)	911, 964, 1528, 2675
SspDI	GGCGCC	1 cut(s)	1290
SspI	AATATT	1 cut(s)	743
SstI	GAGCTC	1 cut(s)	1699
StyD4I	CCNGG	7 cut(s)	98, 507, 654, 917, 1844, 2537, 2546
StyI	CCWWGG	2 cut(s)	1233, 1563
TaaI	ACNGT	7 cut(s)	88, 193, 262, 1223, 1415, 2398, 2463
TaiI	ACGT	2 cut(s)	108, 2500
TaqI	TCGA	6 cut(s)	81, 270, 640, 1299, 2286, 2518
TaqII	GACCGA	1 cut(s)	1269
TatI	WGTACW	3 cut(s)	1630, 1951, 2458
TauI	GCSGC	2 cut(s)	967, 1531
TfiI	GAWTC	8 cut(s)	481, 504, 573, 1183, 1459, 1865, 1895, 2622
TscAI	CASTG	8 cut(s)	267, 817, 1228, 1420, 1857, 2137, 2401, 2673
TseFI	GTSAC	4 cut(s)	262, 431, 1281, 1664
TseI	GCWGC	9 cut(s)	276, 461, 710, 1430, 1823, 1959, 2104, 2429, 2501
Tsp45I	GTSAC	4 cut(s)	262, 431, 1281, 1664
TspRI	CASTG	8 cut(s)	267, 817, 1228, 1420, 1857, 2137, 2401, 2673
Van91I	CCANNNNNTGG	2 cut(s)	812, 2600
Vha464I	CTTAAG	1 cut(s)	169
VneI	GTGCAC	1 cut(s)	1812
VpaK11BI	GGWCC	4 cut(s)	829, 1541, 1637, 2342
XagI	CCTNNNNNAGG	2 cut(s)	1106, 2654
XapI	RAATTY	3 cut(s)	614, 1573, 2259
XbaI	TCTAGA	1 cut(s)	388
XceI	RCATGY	2 cut(s)	2159, 2776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	3 cut(s)	480, 743, 786
ZraI	GACGTC	1 cut(s)	106
ZrmI	AGTACT	1 cut(s)	1632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.