Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016928

Physical Location & Seq

Genomic Coordinates Forward (+)

23785896 .. 23787178

Gene Structure 1283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g33410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAGATTGACATGTTCCCTTCACATGAAGAGAAGGTGGATGAGTTTAGCTTCAACGGACCAGAAGAAAAACTAGAAAAACTAGAGACACAAGCTATACACGAGTGGCCACCGGCAAGTAGCAATAGAAGCACTTACAGCAGCAGCAGCACTAGCAGGGTGGATAACATATGGATGAATGCAAAGGGATGGTTAGGGGGCAAATCCTTAAGTAGCTTGCTAAGACGAAGCAGATCCAAGAAGAAAGAAGATGCTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCTGTCACACGCTTGGCTGCAGCAATCGCAAGTGTTGCTGCAGCTAAGAGAAGCATAGACTCAGGATCAGAATCAGCACATGATACGGTACTTCAACCAGGGAACAACATTGACGACATTTTCACTTCTGCAGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTAGGGGCGCAGACAACTGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACGGGCGATATGATCACACTCACAGCTGATGCTGCAACATGTTTAAGAGGAGTAGCAGCACTCAAAACAAGAGCTATGGCCGATGCATATTTTCCTACAACGCAAAATTTTCTTCAAGTAAAAGCAGAGCTATCTGTTGTCACTCCTTCTGGAAGCAAAAGACATGGCTGGGCCTCCATATATTCGAAGCATAGTCAGCTCATATTGAGCATCCAGAAGAAGCATTTGGGAATCTTAGCCAGAAAAAAGGAATACAAGATTTTGCATGTGGAGGAGGAAAGGGAAGCTGAGGGAAACCTTTCAATCAGCCTAAGGAGCAACAGTGGATACATCAAGCTCTTGTTCAAAGATGAAACCCAATCTTTAGTCTGGACGACAAGCATTTCAAATCTTTTGCAGTTGCATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_canalis PH_2

Protein Analysis

311

Amino Acids

33.77

Weight (kDa)

7.8

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_canalis	PF05703	48 - 202	4.4e-36	Auxin canalisation
PH_2	PF08458	217 - 308	1.7e-09	Plant pleckstrin homology-like region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016928)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33410
malus_domestica	MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica	Prupe.2G322800_v2.0.a1
pyrus_communis	pycom07g27720 pycom10g21160
rosa_chinensis	RchiOBHm_Chr1g0383381
rosa_laevigata	RLG00000026106
rosa_roxburghii	Rroxscaffold_4G00277340
rosa_rugosa	Rorug01G0441100
rosa_samantha	Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana	Rw1G040560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	228, 361
AcoI	YGGCCR	2 cut(s)	107, 600
AcsI	RAATTY	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflII	CTTAAG	1 cut(s)	208
AflIII	ACRYGT	2 cut(s)	12, 560
AgsI	TTSAA	7 cut(s)	55, 263, 383, 638, 825, 868, 909
AjnI	CCWGG	1 cut(s)	385
AjuI	GAANNNNNNNTTGG	2 cut(s)	731, 763
Alw26I	GTCTC	1 cut(s)	80
AlwI	GGATC	2 cut(s)	228, 361
AoxI	GGCC	3 cut(s)	107, 600, 693
ApoI	RAATTY	1 cut(s)	628
Asp700I	GAANNNNTTC	1 cut(s)	820
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	59, 693
AsuII	TTCGAA	1 cut(s)	707
AvaII	GGWCC	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	833
BalI	TGGCCA	1 cut(s)	109
BauI	CACGAG	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	810
BccI	CCATC	1 cut(s)	183
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	1 cut(s)	842
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	80
BfaI	CTAG	3 cut(s)	74, 83, 153
BfmI	CTRYAG	3 cut(s)	306, 327, 417
BfrI	CTTAAG	1 cut(s)	208
BfuI	GTATCC	1 cut(s)	842
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	59, 693
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	4 cut(s)	241, 541, 595, 741
Bpu10I	CCTNAGC	1 cut(s)	810
Bpu14I	TTCGAA	1 cut(s)	707
BsaBI	GATNNNNATC	1 cut(s)	358
BsaJI	CCNNGG	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse118I	RCCGGY	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	833
Bse8I	GATNNNNATC	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	4 cut(s)	46, 180, 194, 732
BseJI	GATNNNNATC	1 cut(s)	358
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	4 cut(s)	363, 447, 516, 801
BseRI	GAGGAG	2 cut(s)	585, 809
BseYI	CCCAGC	2 cut(s)	507, 690
BshFI	GGCC	3 cut(s)	109, 602, 695
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	80
BsmI	GAATGC	2 cut(s)	184, 273
BsnI	GGCC	3 cut(s)	109, 602, 695
Bsp119I	TTCGAA	1 cut(s)	707
Bsp143I	GATC	3 cut(s)	233, 353, 534
BspANI	GGCC	3 cut(s)	109, 602, 695
BspCNI	CTCAG	4 cut(s)	362, 448, 515, 802
BspMAI	CTGCAG	3 cut(s)	310, 331, 421
BspPI	GGATC	2 cut(s)	228, 361
BspT104I	TTCGAA	1 cut(s)	707
BspTI	CTTAAG	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	3 cut(s)	233, 353, 534
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	3 cut(s)	376, 439, 845
Bst6I	CTCTTC	1 cut(s)	24
BstAFI	CTTAAG	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	2 cut(s)	218, 271
BstDEI	CTNAG	8 cut(s)	221, 333, 349, 456, 502, 757, 810, 833
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	4 cut(s)	46, 180, 194, 732
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	3 cut(s)	236, 356, 537
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	233, 353, 534
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	3 cut(s)	16, 564, 791
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	3 cut(s)	306, 327, 417
BstX2I	RGATCY	1 cut(s)	233
BstYI	RGATCY	1 cut(s)	233
Bsu36I	CCTNAGG	1 cut(s)	833
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	3 cut(s)	109, 602, 695
BtsCI	GGATG	4 cut(s)	46, 180, 194, 732
BtsIMutI	CAGTG	1 cut(s)	850
Cac8I	GCNNGC	2 cut(s)	218, 271
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	59, 693
Csp6I	GTAC	1 cut(s)	377
CviAII	CATG	7 cut(s)	13, 26, 278, 368, 561, 686, 788
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	8 cut(s)	221, 333, 349, 456, 502, 757, 810, 833
DpnI	GATC	3 cut(s)	235, 355, 536
DpnII	GATC	3 cut(s)	233, 353, 534
EaeI	YGGCCR	2 cut(s)	107, 600
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	833
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	610
FaeI	CATG	7 cut(s)	16, 29, 281, 371, 564, 689, 791
FatI	CATG	7 cut(s)	12, 25, 277, 367, 560, 685, 787
FauNDI	CATATG	1 cut(s)	170
FbaI	TGATCA	1 cut(s)	534
FokI	GGATG	4 cut(s)	53, 187, 201, 719
FspBI	CTAG	3 cut(s)	74, 83, 153
GlaI	GCGC	1 cut(s)	471
GsaI	CCCAGC	2 cut(s)	511, 694
HaeIII	GGCC	3 cut(s)	109, 602, 695
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	7 cut(s)	16, 29, 281, 371, 564, 689, 791
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	4 cut(s)	347, 359, 458, 753
HpaII	CCGG	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	4 cut(s)	351, 672, 736, 892
HpyAV	CCTTC	3 cut(s)	28, 30, 678
HpyCH4III	ACNGT	3 cut(s)	376, 439, 845
HpyF3I	CTNAG	8 cut(s)	221, 333, 349, 456, 502, 757, 810, 833
Hsp92II	CATG	7 cut(s)	16, 29, 281, 371, 564, 689, 791
HspAI	GCGC	1 cut(s)	470
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	3 cut(s)	233, 353, 534
LmnI	GCTCC	1 cut(s)	837
LweI	GCATC	4 cut(s)	241, 541, 595, 741
MaeI	CTAG	3 cut(s)	74, 83, 153
MaeIII	GTNAC	3 cut(s)	292, 430, 661
MalI	GATC	3 cut(s)	235, 355, 536
MboI	GATC	3 cut(s)	233, 353, 534
MboII	GAAGA	7 cut(s)	41, 77, 253, 260, 480, 626, 751
MflI	RGATCY	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	109
MluCI	AATT	1 cut(s)	628
MluNI	TGGCCA	1 cut(s)	109
MlyI	GAGTC	2 cut(s)	341, 467
MnlI	CCTC	5 cut(s)	563, 706, 787, 790, 805
Mox20I	TGGCCA	1 cut(s)	109
Mph1103I	ATGCAT	1 cut(s)	610
MroXI	GAANNNNTTC	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	109
MseI	TTAA	3 cut(s)	209, 498, 566
MslI	CAYNNNNRTG	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	208
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	387
Mva1269I	GAATGC	2 cut(s)	184, 273
MvaI	CCWGG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	170
NdeII	GATC	3 cut(s)	233, 353, 534
NlaIII	CATG	7 cut(s)	16, 29, 281, 371, 564, 689, 791
NmuCI	GTSAC	2 cut(s)	292, 661
NsiI	ATGCAT	1 cut(s)	610
NspI	RCATGY	3 cut(s)	16, 564, 791
NspV	TTCGAA	1 cut(s)	707
PciI	ACATGT	2 cut(s)	12, 560
PctI	GAATGC	2 cut(s)	184, 273
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	2 cut(s)	359, 753
PleI	GAGTC	2 cut(s)	341, 466
PpsI	GAGTC	2 cut(s)	341, 466
PscI	ACATGT	2 cut(s)	12, 560
Psp6I	CCWGG	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	430
PspFI	CCCAGC	2 cut(s)	507, 690
PspGI	CCWGG	1 cut(s)	385
PspPI	GGNCC	2 cut(s)	59, 693
PstI	CTGCAG	3 cut(s)	310, 331, 421
PsuI	RGATCY	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
RseI	CAYNNNNRTG	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	209, 498, 566
Sau3AI	GATC	3 cut(s)	233, 353, 534
Sau96I	GGNCC	2 cut(s)	59, 693
SchI	GAGTC	2 cut(s)	341, 467
ScrFI	CCNGG	1 cut(s)	387
SfaNI	GCATC	4 cut(s)	241, 541, 595, 741
SfcI	CTRYAG	3 cut(s)	306, 327, 417
SfuI	TTCGAA	1 cut(s)	707
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	1 cut(s)	628
SspMI	CTAG	3 cut(s)	74, 83, 153
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	3 cut(s)	376, 439, 845
TaqI	TCGA	2 cut(s)	256, 707
TasI	AATT	1 cut(s)	628
TfiI	GAWTC	2 cut(s)	359, 753
Tru1I	TTAA	3 cut(s)	209, 498, 566
Tru9I	TTAA	3 cut(s)	209, 498, 566
TscAI	CASTG	1 cut(s)	850
TseFI	GTSAC	2 cut(s)	292, 661
Tsp45I	GTSAC	2 cut(s)	292, 661
TspDTI	ATGAA	4 cut(s)	42, 191, 266, 888
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	850
Vha464I	CTTAAG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	628
XceI	RCATGY	3 cut(s)	16, 564, 791
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	3 cut(s)	74, 83, 153
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.