Rroxscaffold_4G00277340

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0016928
Physical Location & Seq
Reverse (-)
792381 .. 793332
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277340.1

Sequence Viewer

Length: 795 bp
ATGTTCCCTACACATGAAGAAAAGTTGGATGATGAGTTTAGCTTCGAGGGACCAGAAGAAAAGCTAGAGACAGAAGCAATACAGTTTGAGTTGCCACCGGAAAGTAGCAGGAGAAGAACTTTCAGTAGCAGCACTAGCAGGGTGGATAACATATGGACGAATACAAAGGGATGGTTAGGGGGGAAATCCATAACTAGCTTATTAAGACGGAACAAAGCCAAGAAGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCTGTCACACGCTTGGCTGCAGCAATCGCCAGTGTTGCTGCAACCAAGAGCAGCATAGACTCAGAATCAGAATCAGCGCAAGATATTGGCAATCAAGGTACTGTACTTCAATCAAGGAACAACATAGACGACATTTTTGCTTCTGCAGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACTGGCGACATGATCACACTCACAGCTGATGCTGCAACATGTTTAAGAGGAGTTGCAGCACTCAGAGCAAGAGCCAAGGCCGATGCGTATTTTCCAAGAACCCAAAATTTTCTTCCAGTAAAAGCAGAGCTATCTGTCGTCACTCCTTCTGGTAAGAATACATGGGTAGATTTTTCAAATACCTTTTATGTTGTAAGGAAATATCAAACACGGGTTCTTATCTGTGCAAGCAGGAAGCAAAAGATACGGCTGGGCCTCCATATATTCAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

264

Amino Acids

28.75

Weight (kDa)

8.96

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 47 - 201 1.2e-37 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 625
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 2 cut(s) 370, 375
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 245, 380, 696, 787
AjuI GAANNNNNNNTTGG 2 cut(s) 615, 647
AluBI AGCT 7 cut(s) 42, 64, 198, 422, 449, 545, 649
AluI AGCT 7 cut(s) 42, 64, 198, 422, 449, 545, 649
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 2 cut(s) 597, 772
ApoI RAATTY 1 cut(s) 625
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
AspLEI GCGC 2 cut(s) 349, 469
AspS9I GGNCC 2 cut(s) 50, 772
AvaII GGWCC 1 cut(s) 50
BccI CCATC 1 cut(s) 165
BceAI ACGGC 1 cut(s) 782
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 3 cut(s) 65, 135, 195
BfmI CTRYAG 2 cut(s) 288, 414
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 50, 772
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 538, 592
Bsa29I ATCGAT 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 594
BsaWI WCCGGW 1 cut(s) 97
Bse1I ACTGG 3 cut(s) 300, 526, 635
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 3 cut(s) 34, 176, 238
BseMII CTCAG 4 cut(s) 345, 444, 513, 595
BseNI ACTGG 3 cut(s) 300, 526, 635
BseRI GAGGAG 1 cut(s) 582
BseYI CCCAGC 2 cut(s) 504, 769
BshFI GGCC 2 cut(s) 599, 774
BshVI ATCGAT 1 cut(s) 477
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 2 cut(s) 599, 774
Bsp143I GATC 1 cut(s) 531
BspANI GGCC 2 cut(s) 599, 774
BspCNI CTCAG 4 cut(s) 344, 445, 512, 594
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 2 cut(s) 292, 418
BsrI ACTGG 3 cut(s) 300, 526, 635
BssECI CCNNGG 1 cut(s) 594
BssMI GATC 1 cut(s) 531
BssT1I CCWWGG 1 cut(s) 594
Bst4CI ACNGT 3 cut(s) 84, 373, 436
BstC8I GCNNGC 2 cut(s) 253, 748
BstDEI CTNAG 4 cut(s) 331, 453, 499, 581
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 3 cut(s) 34, 176, 238
BstHHI GCGC 2 cut(s) 349, 469
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 531
BstMWI GCNNNNNNNGC 7 cut(s) 135, 296, 305, 416, 449, 551, 584
BstNSI RCATGY 1 cut(s) 561
BstPI GGTNACC 1 cut(s) 427
BstSFI CTRYAG 2 cut(s) 288, 414
BstXI CCANNNNNNTGG 1 cut(s) 521
Bsu15I ATCGAT 1 cut(s) 477
BsuRI GGCC 2 cut(s) 599, 774
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 3 cut(s) 34, 176, 238
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 253, 748
CfoI GCGC 2 cut(s) 349, 469
Cfr13I GGNCC 2 cut(s) 50, 772
ClaI ATCGAT 1 cut(s) 477
Csp6I GTAC 2 cut(s) 369, 374
CviAII CATG 5 cut(s) 14, 260, 529, 558, 681
CviQI GTAC 2 cut(s) 369, 374
DdeI CTNAG 4 cut(s) 331, 453, 499, 581
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 594
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 5 cut(s) 17, 263, 532, 561, 684
FaqI GGGAC 1 cut(s) 63
FatI CATG 5 cut(s) 13, 259, 528, 557, 680
FauNDI CATATG 1 cut(s) 152
FbaI TGATCA 1 cut(s) 531
FokI GGATG 3 cut(s) 41, 183, 245
FspBI CTAG 3 cut(s) 65, 135, 195
GlaI GCGC 2 cut(s) 348, 468
GsaI CCCAGC 2 cut(s) 508, 773
HaeIII GGCC 2 cut(s) 599, 774
HapII CCGG 1 cut(s) 98
HhaI GCGC 2 cut(s) 349, 469
Hin1II CATG 5 cut(s) 17, 263, 532, 561, 684
Hin6I GCGC 2 cut(s) 347, 467
HinP1I GCGC 2 cut(s) 347, 467
HinfI GANTC 4 cut(s) 329, 335, 341, 455
HpaII CCGG 1 cut(s) 98
Hpy188I TCNGA 3 cut(s) 334, 340, 584
HpyAV CCTTC 1 cut(s) 675
HpyCH4III ACNGT 3 cut(s) 84, 373, 436
HpyCH4V TGCA 6 cut(s) 290, 311, 416, 554, 575, 746
HpyF10VI GCNNNNNNNGC 7 cut(s) 135, 296, 305, 416, 449, 551, 584
HpyF3I CTNAG 4 cut(s) 331, 453, 499, 581
Hsp92II CATG 5 cut(s) 17, 263, 532, 561, 684
HspAI GCGC 2 cut(s) 347, 467
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 1 cut(s) 531
LweI GCATC 2 cut(s) 538, 592
MaeI CTAG 3 cut(s) 65, 135, 195
MaeIII GTNAC 3 cut(s) 274, 427, 658
MalI GATC 1 cut(s) 533
MboI GATC 1 cut(s) 531
MboII GAAGA 6 cut(s) 29, 68, 126, 235, 477, 623
MluCI AATT 1 cut(s) 625
MlyI GAGTC 2 cut(s) 323, 464
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 4 cut(s) 40, 223, 560, 785
MseI TTAA 3 cut(s) 203, 495, 563
MspA1I CMGCKG 1 cut(s) 545
MspI CCGG 1 cut(s) 98
Mva1269I GAATGC 1 cut(s) 255
MwoI GCNNNNNNNGC 7 cut(s) 135, 296, 305, 416, 449, 551, 584
NdeI CATATG 1 cut(s) 152
NdeII GATC 1 cut(s) 531
NlaIII CATG 5 cut(s) 17, 263, 532, 561, 684
NlaIV GGNNCC 1 cut(s) 51
NmuCI GTSAC 2 cut(s) 274, 658
NspI RCATGY 1 cut(s) 561
PciI ACATGT 1 cut(s) 557
PctI GAATGC 1 cut(s) 255
PfeI GAWTC 2 cut(s) 335, 341
PleI GAGTC 2 cut(s) 323, 463
PpsI GAGTC 2 cut(s) 323, 463
PscI ACATGT 1 cut(s) 557
PspEI GGTNACC 1 cut(s) 427
PspFI CCCAGC 2 cut(s) 504, 769
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 50, 772
PstI CTGCAG 2 cut(s) 292, 418
PvuII CAGCTG 1 cut(s) 545
RsaI GTAC 2 cut(s) 370, 375
RsaNI GTAC 2 cut(s) 369, 374
SaqAI TTAA 3 cut(s) 203, 495, 563
Sau3AI GATC 1 cut(s) 531
Sau96I GGNCC 2 cut(s) 50, 772
SchI GAGTC 2 cut(s) 323, 464
SetI ASST 9 cut(s) 44, 66, 200, 370, 424, 451, 547, 651, 704
SfaNI GCATC 2 cut(s) 538, 592
SfcI CTRYAG 2 cut(s) 288, 414
SinI GGWCC 1 cut(s) 50
Sse9I AATT 1 cut(s) 625
SspMI CTAG 3 cut(s) 65, 135, 195
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 3 cut(s) 84, 373, 436
TaqI TCGA 3 cut(s) 45, 238, 477
TasI AATT 1 cut(s) 625
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 2 cut(s) 335, 341
Tru1I TTAA 3 cut(s) 203, 495, 563
Tru9I TTAA 3 cut(s) 203, 495, 563
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 2 cut(s) 274, 658
Tsp45I GTSAC 2 cut(s) 274, 658
TspDTI ATGAA 2 cut(s) 30, 248
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 1 cut(s) 625
XceI RCATGY 1 cut(s) 561
XspI CTAG 3 cut(s) 65, 135, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.