Auxin canalisation
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g33410 |
| malus_domestica | MD07G1304200.v1.1 MD10G1255700.v1.1 |
| prunus_persica | Prupe.2G322800_v2.0.a1 |
| pyrus_communis | pycom07g27720 pycom10g21160 |
| rosa_chinensis | RchiOBHm_Chr1g0383381 |
| rosa_laevigata | RLG00000026106 |
| rosa_roxburghii | Rroxscaffold_4G00277340 |
| rosa_rugosa | Rorug01G0441100 |
| rosa_samantha | Rh1AG467100 Rh1BG424400 Rh1DG457100 |
| rosa_wichuraiana | Rw1G040560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 130 |
| AcsI | RAATTY | 1 cut(s) | 625 |
| AcuI | CTGAAG | 1 cut(s) | 465 |
| AfaI | GTAC | 2 cut(s) | 370, 375 |
| AflIII | ACRYGT | 1 cut(s) | 557 |
| AgsI | TTSAA | 5 cut(s) | 245, 380, 705, 825, 868 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 615, 647, 728, 760 |
| Alw26I | GTCTC | 2 cut(s) | 62, 917 |
| AoxI | GGCC | 2 cut(s) | 597, 690 |
| ApoI | RAATTY | 1 cut(s) | 625 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 389, 421 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 820 |
| AspLEI | GCGC | 2 cut(s) | 349, 469 |
| AspS9I | GGNCC | 2 cut(s) | 50, 690 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| AxyI | CCTNAGG | 1 cut(s) | 833 |
| BccI | CCATC | 1 cut(s) | 165 |
| BceAI | ACGGC | 1 cut(s) | 700 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 389, 423 |
| BciVI | GTATCC | 1 cut(s) | 842 |
| BclI | TGATCA | 1 cut(s) | 531 |
| BcoDI | GTCTC | 2 cut(s) | 62, 917 |
| BfaI | CTAG | 5 cut(s) | 65, 135, 195, 650, 909 |
| BfmI | CTRYAG | 2 cut(s) | 288, 414 |
| BfuI | GTATCC | 1 cut(s) | 842 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmgT120I | GGNCC | 2 cut(s) | 50, 690 |
| BmiI | GGNNCC | 1 cut(s) | 51 |
| BmsI | GCATC | 1 cut(s) | 592 |
| BpmI | CTGGAG | 1 cut(s) | 716 |
| Bsa29I | ATCGAT | 1 cut(s) | 477 |
| BsaJI | CCNNGG | 1 cut(s) | 594 |
| BsaWI | WCCGGW | 1 cut(s) | 97 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 829, 859 |
| Bse118I | RCCGGY | 1 cut(s) | 521 |
| Bse1I | ACTGG | 2 cut(s) | 300, 635 |
| Bse21I | CCTNAGG | 1 cut(s) | 833 |
| BseCI | ATCGAT | 1 cut(s) | 477 |
| BseDI | CCNNGG | 1 cut(s) | 594 |
| BseGI | GGATG | 4 cut(s) | 34, 176, 238, 900 |
| BseMII | CTCAG | 4 cut(s) | 345, 444, 513, 595 |
| BseNI | ACTGG | 2 cut(s) | 300, 635 |
| BseRI | GAGGAG | 2 cut(s) | 582, 806 |
| BseYI | CCCAGC | 2 cut(s) | 504, 687 |
| BshFI | GGCC | 2 cut(s) | 599, 692 |
| BshVI | ATCGAT | 1 cut(s) | 477 |
| BsiSI | CCGG | 2 cut(s) | 98, 522 |
| BslFI | GGGAC | 1 cut(s) | 63 |
| BsmAI | GTCTC | 2 cut(s) | 62, 917 |
| BsmFI | GGGAC | 1 cut(s) | 63 |
| BsmI | GAATGC | 1 cut(s) | 255 |
| BsnI | GGCC | 2 cut(s) | 599, 692 |
| Bsp143I | GATC | 1 cut(s) | 531 |
| BspACI | CCGC | 1 cut(s) | 130 |
| BspANI | GGCC | 2 cut(s) | 599, 692 |
| BspCNI | CTCAG | 4 cut(s) | 344, 445, 512, 594 |
| BspDI | ATCGAT | 1 cut(s) | 477 |
| BspLI | GGNNCC | 1 cut(s) | 51 |
| BspMAI | CTGCAG | 2 cut(s) | 292, 418 |
| BsrFI | RCCGGY | 1 cut(s) | 521 |
| BsrI | ACTGG | 2 cut(s) | 300, 635 |
| BssAI | RCCGGY | 1 cut(s) | 521 |
| BssECI | CCNNGG | 1 cut(s) | 594 |
| BssMI | GATC | 1 cut(s) | 531 |
| BssT1I | CCWWGG | 1 cut(s) | 594 |
| Bst4CI | ACNGT | 5 cut(s) | 84, 373, 436, 845, 921 |
| BstC8I | GCNNGC | 1 cut(s) | 253 |
| BstDEI | CTNAG | 6 cut(s) | 331, 453, 499, 581, 754, 833 |
| BstEII | GGTNACC | 1 cut(s) | 427 |
| BstF5I | GGATG | 4 cut(s) | 34, 176, 238, 900 |
| BstHHI | GCGC | 2 cut(s) | 349, 469 |
| BstKTI | GATC | 1 cut(s) | 534 |
| BstMAI | GTCTC | 2 cut(s) | 62, 917 |
| BstMBI | GATC | 1 cut(s) | 531 |
| BstNSI | RCATGY | 1 cut(s) | 788 |
| BstPI | GGTNACC | 1 cut(s) | 427 |
| BstSFI | CTRYAG | 2 cut(s) | 288, 414 |
| Bsu15I | ATCGAT | 1 cut(s) | 477 |
| Bsu36I | CCTNAGG | 1 cut(s) | 833 |
| BsuI | GTATCC | 1 cut(s) | 842 |
| BsuRI | GGCC | 2 cut(s) | 599, 692 |
| BsuTUI | ATCGAT | 1 cut(s) | 477 |
| BtsCI | GGATG | 4 cut(s) | 34, 176, 238, 900 |
| BtsIMutI | CAGTG | 2 cut(s) | 307, 850 |
| Cac8I | GCNNGC | 1 cut(s) | 253 |
| CfoI | GCGC | 2 cut(s) | 349, 469 |
| Cfr10I | RCCGGY | 1 cut(s) | 521 |
| Cfr13I | GGNCC | 2 cut(s) | 50, 690 |
| ClaI | ATCGAT | 1 cut(s) | 477 |
| CseI | GACGC | 1 cut(s) | 557 |
| Csp6I | GTAC | 2 cut(s) | 369, 374 |
| CviAII | CATG | 4 cut(s) | 14, 260, 529, 785 |
| CviQI | GTAC | 2 cut(s) | 369, 374 |
| DdeI | CTNAG | 6 cut(s) | 331, 453, 499, 581, 754, 833 |
| DpnI | GATC | 1 cut(s) | 533 |
| DpnII | GATC | 1 cut(s) | 531 |
| Eco130I | CCWWGG | 1 cut(s) | 594 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| Eco57I | CTGAAG | 1 cut(s) | 465 |
| Eco81I | CCTNAGG | 1 cut(s) | 833 |
| Eco91I | GGTNACC | 1 cut(s) | 427 |
| EcoO65I | GGTNACC | 1 cut(s) | 427 |
| EcoT14I | CCWWGG | 1 cut(s) | 594 |
| ErhI | CCWWGG | 1 cut(s) | 594 |
| FaeI | CATG | 4 cut(s) | 17, 263, 532, 788 |
| FaqI | GGGAC | 1 cut(s) | 63 |
| FatI | CATG | 4 cut(s) | 13, 259, 528, 784 |
| FauNDI | CATATG | 1 cut(s) | 152 |
| FbaI | TGATCA | 1 cut(s) | 531 |
| FokI | GGATG | 4 cut(s) | 41, 183, 245, 907 |
| FspBI | CTAG | 5 cut(s) | 65, 135, 195, 650, 909 |
| GlaI | GCGC | 2 cut(s) | 348, 468 |
| GsaI | CCCAGC | 2 cut(s) | 508, 691 |
| GsuI | CTGGAG | 1 cut(s) | 716 |
| HaeIII | GGCC | 2 cut(s) | 599, 692 |
| HapII | CCGG | 2 cut(s) | 98, 522 |
| HgaI | GACGC | 1 cut(s) | 557 |
| HhaI | GCGC | 2 cut(s) | 349, 469 |
| Hin1II | CATG | 4 cut(s) | 17, 263, 532, 788 |
| Hin6I | GCGC | 2 cut(s) | 347, 467 |
| HinP1I | GCGC | 2 cut(s) | 347, 467 |
| HinfI | GANTC | 5 cut(s) | 329, 335, 341, 455, 750 |
| HpaII | CCGG | 2 cut(s) | 98, 522 |
| Hpy188I | TCNGA | 3 cut(s) | 334, 340, 584 |
| Hpy188III | TCNNGA | 3 cut(s) | 669, 733, 892 |
| HpyAV | CCTTC | 2 cut(s) | 18, 675 |
| HpyCH4III | ACNGT | 5 cut(s) | 84, 373, 436, 845, 921 |
| HpyCH4IV | ACGT | 1 cut(s) | 559 |
| HpyCH4V | TGCA | 7 cut(s) | 290, 311, 416, 554, 575, 784, 925 |
| HpyF3I | CTNAG | 6 cut(s) | 331, 453, 499, 581, 754, 833 |
| HpySE526I | ACGT | 1 cut(s) | 559 |
| Hsp92II | CATG | 4 cut(s) | 17, 263, 532, 788 |
| HspAI | GCGC | 2 cut(s) | 347, 467 |
| Ksp22I | TGATCA | 1 cut(s) | 531 |
| Kzo9I | GATC | 1 cut(s) | 531 |
| LmnI | GCTCC | 1 cut(s) | 837 |
| LweI | GCATC | 1 cut(s) | 592 |
| MaeI | CTAG | 5 cut(s) | 65, 135, 195, 650, 909 |
| MaeII | ACGT | 1 cut(s) | 559 |
| MaeIII | GTNAC | 3 cut(s) | 274, 427, 658 |
| MalI | GATC | 1 cut(s) | 533 |
| MboI | GATC | 1 cut(s) | 531 |
| MboII | GAAGA | 6 cut(s) | 29, 68, 235, 477, 623, 748 |
| MluCI | AATT | 1 cut(s) | 625 |
| MlyI | GAGTC | 2 cut(s) | 323, 464 |
| MmeI | TCCRAC | 1 cut(s) | 6 |
| MnlI | CCTC | 7 cut(s) | 40, 223, 560, 703, 740, 784, 787 |
| MroXI | GAANNNNTTC | 1 cut(s) | 820 |
| MseI | TTAA | 3 cut(s) | 203, 495, 563 |
| MspA1I | CMGCKG | 1 cut(s) | 545 |
| MspI | CCGG | 2 cut(s) | 98, 522 |
| Mva1269I | GAATGC | 1 cut(s) | 255 |
| NdeI | CATATG | 1 cut(s) | 152 |
| NdeII | GATC | 1 cut(s) | 531 |
| NlaIII | CATG | 4 cut(s) | 17, 263, 532, 788 |
| NlaIV | GGNNCC | 1 cut(s) | 51 |
| NmuCI | GTSAC | 2 cut(s) | 274, 658 |
| NspI | RCATGY | 1 cut(s) | 788 |
| PctI | GAATGC | 1 cut(s) | 255 |
| PdmI | GAANNNNTTC | 1 cut(s) | 820 |
| PfeI | GAWTC | 3 cut(s) | 335, 341, 750 |
| PleI | GAGTC | 2 cut(s) | 323, 463 |
| PpsI | GAGTC | 2 cut(s) | 323, 463 |
| PspEI | GGTNACC | 1 cut(s) | 427 |
| PspFI | CCCAGC | 2 cut(s) | 504, 687 |
| PspN4I | GGNNCC | 1 cut(s) | 51 |
| PspPI | GGNCC | 2 cut(s) | 50, 690 |
| PstI | CTGCAG | 2 cut(s) | 292, 418 |
| PvuII | CAGCTG | 1 cut(s) | 545 |
| RsaI | GTAC | 2 cut(s) | 370, 375 |
| RsaNI | GTAC | 2 cut(s) | 369, 374 |
| SaqAI | TTAA | 3 cut(s) | 203, 495, 563 |
| Sau3AI | GATC | 1 cut(s) | 531 |
| Sau96I | GGNCC | 2 cut(s) | 50, 690 |
| SchI | GAGTC | 2 cut(s) | 323, 464 |
| SfaNI | GCATC | 1 cut(s) | 592 |
| SfcI | CTRYAG | 2 cut(s) | 288, 414 |
| SinI | GGWCC | 1 cut(s) | 50 |
| Sse9I | AATT | 1 cut(s) | 625 |
| SsiI | CCGC | 1 cut(s) | 130 |
| SspMI | CTAG | 5 cut(s) | 65, 135, 195, 650, 909 |
| StyI | CCWWGG | 1 cut(s) | 594 |
| TaaI | ACNGT | 5 cut(s) | 84, 373, 436, 845, 921 |
| TaiI | ACGT | 1 cut(s) | 562 |
| TaqI | TCGA | 3 cut(s) | 45, 238, 477 |
| TasI | AATT | 1 cut(s) | 625 |
| TatI | WGTACW | 1 cut(s) | 373 |
| TauI | GCSGC | 1 cut(s) | 132 |
| TfiI | GAWTC | 3 cut(s) | 335, 341, 750 |
| Tru1I | TTAA | 3 cut(s) | 203, 495, 563 |
| Tru9I | TTAA | 3 cut(s) | 203, 495, 563 |
| TscAI | CASTG | 2 cut(s) | 307, 850 |
| TseFI | GTSAC | 2 cut(s) | 274, 658 |
| Tsp45I | GTSAC | 2 cut(s) | 274, 658 |
| TspDTI | ATGAA | 3 cut(s) | 30, 248, 888 |
| TspGWI | ACGGA | 1 cut(s) | 223 |
| TspRI | CASTG | 2 cut(s) | 307, 850 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| XapI | RAATTY | 1 cut(s) | 625 |
| XceI | RCATGY | 1 cut(s) | 788 |
| XmnI | GAANNNNTTC | 1 cut(s) | 820 |
| XspI | CTAG | 5 cut(s) | 65, 135, 195, 650, 909 |