RchiOBHm_Chr1g0383381

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0016928
Physical Location & Seq
Forward (+)
67738503 .. 67739466
964 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60632

Sequence Viewer

Length: 738 bp
ATGCAGATCAACATGTTCCCTTCACATGAAGAAAAGTTGGATGATGAGTTTAGCTTCGAGGGACCAGATGAAAAGCTAGAGACAGAAGCAATACAGTTTGAGTTGCCACCGGAAAGTAGCAGGAGAAGCACTTTCAGTAGCCGCACTAGCAGGGTGGATAACATATGGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCTGTCACACGCTTGGCTGCAGCTATCGCCAGTGTTGCTGCAACCAAGAGCAGCATAGACTCAGAATCAGAATCAGCGCAAGATATTGGCAATCAAGGTACTGTACTTCAATCAAGGAACAACATAGACGACATTTTTGCTTCTGCAGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACTGGCGACATGATCACACTCACAGCTGACGCTGCAACACGTTTAAGGGGAGTTGCAGCACTCAGAGCAAGAGCCAAGGCCGATGCGTATTTTCCAAGAACCCAAAATTTTCTTCCAGTAAAAGCAGAGCTATCTGTCGTCACTCCTTCTGGTAAGAATACATGGGTAGATTTTTCAAATACCTTTTATGTTGTAAGGAAATATAAAACACAGGTTCTTATCTGTGCAAGCAGGAAGCAAAAGATACGGCTGGGCCTCCATATATTCAAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

245

Amino Acids

26.69

Weight (kDa)

5.98

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 56 - 182 5.4e-31 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 568
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 2 cut(s) 313, 318
AflIII ACRYGT 2 cut(s) 12, 500
AgsI TTSAA 4 cut(s) 188, 323, 639, 730
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AluBI AGCT 7 cut(s) 54, 76, 236, 365, 392, 488, 592
AluI AGCT 7 cut(s) 54, 76, 236, 365, 392, 488, 592
Alw26I GTCTC 1 cut(s) 74
AoxI GGCC 2 cut(s) 540, 715
ApoI RAATTY 1 cut(s) 568
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 2 cut(s) 292, 412
AspS9I GGNCC 2 cut(s) 62, 715
AvaII GGWCC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 725
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 2 cut(s) 77, 147
BfmI CTRYAG 2 cut(s) 231, 357
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 62, 715
BmiI GGNNCC 1 cut(s) 63
BmsI GCATC 1 cut(s) 535
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 109
Bse1I ACTGG 3 cut(s) 243, 469, 578
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 2 cut(s) 46, 181
BseMII CTCAG 4 cut(s) 288, 387, 456, 538
BseNI ACTGG 3 cut(s) 243, 469, 578
BseYI CCCAGC 2 cut(s) 447, 712
BshFI GGCC 2 cut(s) 542, 717
BshVI ATCGAT 1 cut(s) 420
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 2 cut(s) 542, 717
Bsp143I GATC 2 cut(s) 6, 474
BspACI CCGC 1 cut(s) 142
BspANI GGCC 2 cut(s) 542, 717
BspCNI CTCAG 4 cut(s) 287, 388, 455, 537
BspDI ATCGAT 1 cut(s) 420
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 2 cut(s) 235, 361
BsrI ACTGG 3 cut(s) 243, 469, 578
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 2 cut(s) 6, 474
BssT1I CCWWGG 1 cut(s) 537
Bst4CI ACNGT 3 cut(s) 96, 316, 379
BstC8I GCNNGC 2 cut(s) 196, 691
BstDEI CTNAG 4 cut(s) 274, 396, 442, 524
BstEII GGTNACC 1 cut(s) 370
BstF5I GGATG 2 cut(s) 46, 181
BstHHI GCGC 2 cut(s) 292, 412
BstKTI GATC 2 cut(s) 9, 477
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 6, 474
BstMWI GCNNNNNNNGC 8 cut(s) 126, 147, 239, 248, 359, 392, 494, 527
BstNSI RCATGY 1 cut(s) 16
BstPI GGTNACC 1 cut(s) 370
BstSFI CTRYAG 2 cut(s) 231, 357
BstXI CCANNNNNNTGG 1 cut(s) 464
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 2 cut(s) 542, 717
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 2 cut(s) 46, 181
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 196, 691
CfoI GCGC 2 cut(s) 292, 412
Cfr13I GGNCC 2 cut(s) 62, 715
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 1 cut(s) 500
Csp6I GTAC 2 cut(s) 312, 317
CviAII CATG 5 cut(s) 13, 26, 203, 472, 624
CviQI GTAC 2 cut(s) 312, 317
DdeI CTNAG 4 cut(s) 274, 396, 442, 524
DpnI GATC 2 cut(s) 8, 476
DpnII GATC 2 cut(s) 6, 474
Eco130I CCWWGG 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 370
EcoO65I GGTNACC 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 5 cut(s) 16, 29, 206, 475, 627
FaqI GGGAC 1 cut(s) 75
FatI CATG 5 cut(s) 12, 25, 202, 471, 623
FauNDI CATATG 1 cut(s) 164
FbaI TGATCA 1 cut(s) 474
FokI GGATG 2 cut(s) 53, 188
FspBI CTAG 2 cut(s) 77, 147
GlaI GCGC 2 cut(s) 291, 411
GsaI CCCAGC 2 cut(s) 451, 716
HaeIII GGCC 2 cut(s) 542, 717
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 500
HhaI GCGC 2 cut(s) 292, 412
Hin1II CATG 5 cut(s) 16, 29, 206, 475, 627
Hin6I GCGC 2 cut(s) 290, 410
HinP1I GCGC 2 cut(s) 290, 410
HinfI GANTC 4 cut(s) 272, 278, 284, 398
HpaII CCGG 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 277, 283, 527
HpyAV CCTTC 2 cut(s) 30, 618
HpyCH4III ACNGT 3 cut(s) 96, 316, 379
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 7 cut(s) 4, 233, 254, 359, 497, 518, 689
HpyF10VI GCNNNNNNNGC 8 cut(s) 126, 147, 239, 248, 359, 392, 494, 527
HpyF3I CTNAG 4 cut(s) 274, 396, 442, 524
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 5 cut(s) 16, 29, 206, 475, 627
HspAI GCGC 2 cut(s) 290, 410
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 2 cut(s) 6, 474
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 77, 147
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 3 cut(s) 217, 370, 601
MalI GATC 2 cut(s) 8, 476
MboI GATC 2 cut(s) 6, 474
MboII GAAGA 3 cut(s) 41, 420, 566
MluCI AATT 1 cut(s) 568
MlyI GAGTC 2 cut(s) 266, 407
MmeI TCCRAC 1 cut(s) 18
MnlI CCTC 3 cut(s) 52, 166, 728
MseI TTAA 2 cut(s) 438, 506
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 198
MwoI GCNNNNNNNGC 8 cut(s) 126, 147, 239, 248, 359, 392, 494, 527
NdeI CATATG 1 cut(s) 164
NdeII GATC 2 cut(s) 6, 474
NlaIII CATG 5 cut(s) 16, 29, 206, 475, 627
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 217, 601
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 278, 284
PleI GAGTC 2 cut(s) 266, 406
PpsI GAGTC 2 cut(s) 266, 406
PscI ACATGT 1 cut(s) 12
PspEI GGTNACC 1 cut(s) 370
PspFI CCCAGC 2 cut(s) 447, 712
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 62, 715
PstI CTGCAG 2 cut(s) 235, 361
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 313, 318
RsaNI GTAC 2 cut(s) 312, 317
SaqAI TTAA 2 cut(s) 438, 506
Sau3AI GATC 2 cut(s) 6, 474
Sau96I GGNCC 2 cut(s) 62, 715
SchI GAGTC 2 cut(s) 266, 407
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 2 cut(s) 231, 357
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 568
SsiI CCGC 1 cut(s) 142
SspMI CTAG 2 cut(s) 77, 147
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 3 cut(s) 96, 316, 379
TaiI ACGT 1 cut(s) 505
TaqI TCGA 3 cut(s) 57, 181, 420
TasI AATT 1 cut(s) 568
TatI WGTACW 1 cut(s) 316
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 278, 284
Tru1I TTAA 2 cut(s) 438, 506
Tru9I TTAA 2 cut(s) 438, 506
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 217, 601
Tsp45I GTSAC 2 cut(s) 217, 601
TspDTI ATGAA 3 cut(s) 42, 84, 191
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 568
XceI RCATGY 1 cut(s) 16
XspI CTAG 2 cut(s) 77, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.