Rh1BG424400

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0016928
Physical Location & Seq
Forward (+)
54315808 .. 54316990
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG424400.1

Sequence Viewer

Length: 912 bp
ATGCATAGTCATATGGAGGAAACACCGGGCAGATCAGTCTCCTTCAAAACTCAGCATCAATCAACCAACACAGTGAGAAACGGAAAGCTGGAGTCTAGGCGCAGAGCAGACCAATGCTCCTTACAGAGAAGAGAAACATTATCGCCGTCTTCTTCTTCTTCTTGCTGCAGCTCCTTGGGGATTCCTCATAGCCCCATCCGTGCCATGGAGTTTCTAAGTCGCTCATGGAGCCCCTCTGCCTATAACTTTCAACAGATGTTTCCATCCAGTATCAACATGTTCCCTTCACATGAAGAAAAGTTGGATGATGAGTTTAGCTTCGAGGGACCAGAAGAAAAGCTAGAGACAGAAGCAATACAGTTTGAGTTGCCACCCGAAAGTAGCAGGAGAAGCACTTTCAGTAGCCGCACTAGCAGGGTGGATAACATATGGACGAATACAAAGGGATGGTTAGGGGGGAAATCCATAACTAGCTTATTAAGACGGAACAAAGCCAAGAAGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCTGTCACACGCTTGGCTGCAGCTATCGCCAGTGTTGCTGCAACCAAGAGCAGCATAGACTCAGAATCAGAATCAGCGCAAGATATTGGCAATCAAGGTACTGTACTTCAATCAAGGAACAACATAGACGACATTTTTGCTTCTGCGGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACCGGCGACATGATCACACTCACAGCTGACGCTGCAACACGTAAGCTTAAACATATAGTGTTTCCTTTCACCAGATTATGTAAAATGCATATTAACACGATGACTTGCCAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

303

Amino Acids

33.27

Weight (kDa)

8.22

Isoelectric Point (pI)

67.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 139 - 278 1.2e-27 Auxin canalisation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 406, 692
AcuI CTGAAG 1 cut(s) 741
AfaI GTAC 2 cut(s) 646, 651
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 2 cut(s) 276, 833
AgsI TTSAA 4 cut(s) 46, 251, 521, 656
AjnI CCWGG 1 cut(s) 903
Alw26I GTCTC 2 cut(s) 43, 338
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
AspLEI GCGC 3 cut(s) 102, 625, 745
AspS9I GGNCC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 856
AvaII GGWCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 141
BccI CCATC 3 cut(s) 203, 271, 441
BceAI ACGGC 1 cut(s) 130
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciT130I CCWGG 1 cut(s) 905
BclI TGATCA 1 cut(s) 807
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 2 cut(s) 43, 338
BfaI CTAG 4 cut(s) 96, 341, 411, 471
BfmI CTRYAG 2 cut(s) 166, 564
Bme1390I CCNGG 2 cut(s) 27, 905
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 2 cut(s) 230, 327
BmrFI CCNGG 2 cut(s) 27, 905
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 753
BsaAI YACGTR 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 174, 204
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 797
Bse1I ACTGG 2 cut(s) 267, 576
BseBI CCWGG 1 cut(s) 905
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 2 cut(s) 174, 204
BseGI GGATG 5 cut(s) 195, 263, 310, 452, 514
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 4 cut(s) 65, 621, 720, 789
BseNI ACTGG 2 cut(s) 267, 576
BseYI CCCAGC 1 cut(s) 780
BshVI ATCGAT 1 cut(s) 753
BsiSI CCGG 2 cut(s) 26, 798
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 43, 338
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 32, 807
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 2 cut(s) 406, 692
BspCNI CTCAG 4 cut(s) 64, 620, 721, 788
BspDI ATCGAT 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 230, 327
BspMAI CTGCAG 2 cut(s) 170, 568
BsrFI RCCGGY 1 cut(s) 797
BsrI ACTGG 2 cut(s) 267, 576
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 2 cut(s) 174, 204
BssMI GATC 2 cut(s) 32, 807
BssT1I CCWWGG 2 cut(s) 174, 204
Bst2UI CCWGG 1 cut(s) 905
Bst4CI ACNGT 4 cut(s) 73, 360, 649, 712
Bst6I CTCTTC 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 836
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 5 cut(s) 51, 215, 607, 729, 775
BstDSI CCRYGG 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 703
BstF5I GGATG 5 cut(s) 195, 263, 310, 452, 514
BstHHI GCGC 3 cut(s) 102, 625, 745
BstKTI GATC 2 cut(s) 35, 810
BstMAI GTCTC 2 cut(s) 43, 338
BstMBI GATC 2 cut(s) 32, 807
BstMWI GCNNNNNNNGC 8 cut(s) 228, 390, 411, 572, 581, 692, 725, 827
BstNI CCWGG 1 cut(s) 905
BstNSI RCATGY 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 25, 903
BstSFI CTRYAG 2 cut(s) 166, 564
BstV2I GAAGAC 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 753
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 5 cut(s) 195, 263, 310, 452, 514
BtsIMutI CAGTG 2 cut(s) 78, 583
Cac8I GCNNGC 1 cut(s) 529
CfoI GCGC 3 cut(s) 102, 625, 745
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 1 cut(s) 326
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 1 cut(s) 833
Csp6I GTAC 2 cut(s) 645, 650
CviAII CATG 6 cut(s) 205, 225, 277, 290, 536, 805
CviQI GTAC 2 cut(s) 645, 650
DdeI CTNAG 5 cut(s) 51, 215, 607, 729, 775
DpnI GATC 2 cut(s) 34, 809
DpnII GATC 2 cut(s) 32, 807
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 174, 204
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 741
Eco91I GGTNACC 1 cut(s) 703
EcoO65I GGTNACC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 903
EcoT14I CCWWGG 2 cut(s) 174, 204
EcoT22I ATGCAT 2 cut(s) 6, 885
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 174, 204
FaeI CATG 6 cut(s) 208, 228, 280, 293, 539, 808
FaqI GGGAC 1 cut(s) 339
FatI CATG 6 cut(s) 204, 224, 276, 289, 535, 804
FauNDI CATATG 2 cut(s) 12, 428
FbaI TGATCA 1 cut(s) 807
FokI GGATG 5 cut(s) 182, 250, 317, 459, 521
FriOI GRGCYC 1 cut(s) 233
FspBI CTAG 4 cut(s) 96, 341, 411, 471
GlaI GCGC 3 cut(s) 101, 624, 744
GsaI CCCAGC 1 cut(s) 784
GsuI CTGGAG 1 cut(s) 110
HapII CCGG 2 cut(s) 26, 798
HgaI GACGC 1 cut(s) 833
HhaI GCGC 3 cut(s) 102, 625, 745
Hin1II CATG 6 cut(s) 208, 228, 280, 293, 539, 808
Hin6I GCGC 3 cut(s) 100, 623, 743
HinP1I GCGC 3 cut(s) 100, 623, 743
HindIII AAGCTT 1 cut(s) 839
HinfI GANTC 6 cut(s) 92, 181, 605, 611, 617, 731
HpaII CCGG 2 cut(s) 26, 798
HphI GGTGA 1 cut(s) 856
Hpy188I TCNGA 2 cut(s) 610, 616
HpyAV CCTTC 2 cut(s) 52, 294
HpyCH4III ACNGT 4 cut(s) 73, 360, 649, 712
HpyCH4IV ACGT 1 cut(s) 835
HpyCH4V TGCA 6 cut(s) 4, 168, 566, 587, 830, 883
HpyF10VI GCNNNNNNNGC 8 cut(s) 228, 390, 411, 572, 581, 692, 725, 827
HpyF3I CTNAG 5 cut(s) 51, 215, 607, 729, 775
HpySE526I ACGT 1 cut(s) 835
Hsp92II CATG 6 cut(s) 208, 228, 280, 293, 539, 808
HspAI GCGC 3 cut(s) 100, 623, 743
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 2 cut(s) 32, 807
LmnI GCTCC 3 cut(s) 122, 176, 228
LweI GCATC 1 cut(s) 64
MaeI CTAG 4 cut(s) 96, 341, 411, 471
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 2 cut(s) 550, 703
MalI GATC 2 cut(s) 34, 809
MboI GATC 2 cut(s) 32, 807
MboII GAAGA 9 cut(s) 141, 141, 144, 147, 150, 305, 344, 511, 753
MhlI GDGCHC 1 cut(s) 233
MlyI GAGTC 3 cut(s) 101, 599, 740
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 5 cut(s) 10, 195, 244, 316, 499
Mph1103I ATGCAT 2 cut(s) 6, 885
MseI TTAA 5 cut(s) 479, 771, 843, 888, 910
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 2 cut(s) 26, 798
MspR9I CCNGG 2 cut(s) 27, 905
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 1 cut(s) 905
MwoI GCNNNNNNNGC 8 cut(s) 228, 390, 411, 572, 581, 692, 725, 827
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 204
NdeI CATATG 2 cut(s) 12, 428
NdeII GATC 2 cut(s) 32, 807
NlaIII CATG 6 cut(s) 208, 228, 280, 293, 539, 808
NlaIV GGNNCC 2 cut(s) 230, 327
NmuCI GTSAC 1 cut(s) 550
NsiI ATGCAT 2 cut(s) 6, 885
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 3 cut(s) 181, 611, 617
PleI GAGTC 3 cut(s) 100, 599, 739
PpsI GAGTC 3 cut(s) 100, 599, 739
Ppu21I YACGTR 1 cut(s) 836
PscI ACATGT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 903
PspEI GGTNACC 1 cut(s) 703
PspFI CCCAGC 1 cut(s) 780
PspGI CCWGG 1 cut(s) 903
PspN4I GGNNCC 2 cut(s) 230, 327
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 2 cut(s) 170, 568
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 646, 651
RsaNI GTAC 2 cut(s) 645, 650
SaqAI TTAA 5 cut(s) 479, 771, 843, 888, 910
Sau3AI GATC 2 cut(s) 32, 807
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 3 cut(s) 101, 599, 740
ScrFI CCNGG 2 cut(s) 27, 905
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 166, 564
SinI GGWCC 1 cut(s) 326
SsiI CCGC 2 cut(s) 406, 692
SspMI CTAG 4 cut(s) 96, 341, 411, 471
StyD4I CCNGG 2 cut(s) 25, 903
StyI CCWWGG 2 cut(s) 174, 204
TaaI ACNGT 4 cut(s) 73, 360, 649, 712
TaiI ACGT 1 cut(s) 838
TaqI TCGA 3 cut(s) 321, 514, 753
TatI WGTACW 1 cut(s) 649
TauI GCSGC 2 cut(s) 408, 695
TfiI GAWTC 3 cut(s) 181, 611, 617
Tru1I TTAA 5 cut(s) 479, 771, 843, 888, 910
Tru9I TTAA 5 cut(s) 479, 771, 843, 888, 910
TscAI CASTG 2 cut(s) 78, 583
TseFI GTSAC 1 cut(s) 550
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 2 cut(s) 306, 524
TspGWI ACGGA 3 cut(s) 96, 188, 499
TspRI CASTG 2 cut(s) 78, 583
VpaK11BI GGWCC 1 cut(s) 326
XceI RCATGY 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XspI CTAG 4 cut(s) 96, 341, 411, 471
Zsp2I ATGCAT 2 cut(s) 6, 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.