MD07G1304200.v1.1

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016928
Physical Location & Seq
Forward (+)
36173372 .. 36175145
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1304200.v1.1.491

Sequence Viewer

Length: 1071 bp
ATGGAGGAACTGTATAGGACAGTTGGAGCGGGCAGATCAGTCTCCTTTAAAACCCAGCAATACCAATCAACTAACACAATTCCACACAGCCCAATTCATGCCATGGAGTTTCTCTGTCGCTCGTGGAGTTCGTCTGCCTATAACTTTCAACAGATGTTCACATCAACTGACGTGTCTCCTTCACATGACGACTGGAGTTCAGAGAAACAAGACGAAAAGCTGGACGATAAGTTTAGCTCAGGGGAATCCGAAGATACAAAACTGGCGATAGAAGAAGTTATAAATGAGTTTCCACTTCAGAGAAGAAGCAGTATGTTCAGCAGGGGATCATGGTGGGGAAGCAAATCTTTAACCAGCTTACTTAGACAGCAGAGACTGAAGAAGAAAGAAGATATCCGGCTTCACACAGCTAGCGTTCACGCAGCGCTCTCTGTCACAAGCTTGGCTGCTGCGATTGCCAGTGTTGCAGCTTCCAAGAGCGGCATAGAATCAGTAGAAGTCGGTGAAGATGGCAACCCCATCATCATAGGCAACATTGTTGCTTCTGCGGCAGCTCTGGTTACTGCAGTATGTGCCGAAGCTGCAGAGTCGTTGGGTGCGCACACCACTCATGTTTCTTCTGCCATCAACTCAGGCTTGGCTATCCAGACCACCGGCGACATGATCACACTCACAGCTGCTGCTGCAACAAGTTTAAGAGGAGCTGCAGCACTCAAAGCAAGAGCCATCCCGGATGCCTACTTTCCAAAAAACCGAAATTTGCTGGAAGTAAAAGCTGAACTATCAGTTGTCACTCCTTCTGGAAGCAGAAGATACGGGTTGGCGGCCATATACTCGAAGCACAGTCAGCTCATTCTGAGCATCCAAAAGAAGCATCTGGGATTCTTAGCAACAAGAAAGGAGTATAAGATTTTGCGTGTGATGGAGGGATACCAGGAAGCTCAGGGTCACGGCAACTTTTCGATCTGCCTAAGGAGCAACAATGGAGATATCAAGCTCTTGTTTAAAGATGAAAACCAAACATTGGCCTGGACATCAAGCATTTCTAATCTCTTACAGATGCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

357

Amino Acids

38.77

Weight (kDa)

8.32

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 53 - 243 1.1e-42 Auxin canalisation
PH_2 PF08458 260 - 354 7.4e-09 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
Acc16I TGCGCA 1 cut(s) 600
AccB7I CCANNNNNTGG 1 cut(s) 1024
AccBSI CCGCTC 2 cut(s) 29, 480
AciI CCGC 4 cut(s) 29, 480, 548, 824
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 757
AcuI CTGAAG 2 cut(s) 281, 398
AfeI AGCGCT 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 1024
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 1 cut(s) 149
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 2 cut(s) 933, 1028
Alw26I GTCTC 3 cut(s) 46, 180, 367
AlwI GGATC 1 cut(s) 334
AlwNI CAGNNNCTG 2 cut(s) 376, 680
Aor51HI AGCGCT 1 cut(s) 426
AoxI GGCC 2 cut(s) 825, 1026
ApoI RAATTY 1 cut(s) 757
AspLEI GCGC 2 cut(s) 427, 601
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 1 cut(s) 515
AsuNHI GCTAGC 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 971
BauI CACGAG 1 cut(s) 121
BccI CCATC 5 cut(s) 503, 527, 632, 734, 916
BceAI ACGGC 1 cut(s) 967
BciT130I CCWGG 2 cut(s) 935, 1030
BciVI GTATCC 1 cut(s) 923
BclI TGATCA 1 cut(s) 663
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 3 cut(s) 46, 180, 367
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 3 cut(s) 564, 582, 705
BfoI RGCGCY 1 cut(s) 428
BfuI GTATCC 1 cut(s) 923
Bme1390I CCNGG 3 cut(s) 731, 935, 1030
BmgBI CACGTC 1 cut(s) 172
BmrFI CCNGG 3 cut(s) 731, 935, 1030
BmsI GCATC 4 cut(s) 724, 870, 883, 1050
BmtI GCTAGC 1 cut(s) 414
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 2 cut(s) 238, 942
BpuMI CCSGG 1 cut(s) 731
BsaJI CCNNGG 1 cut(s) 102
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 1024
Bse118I RCCGGY 1 cut(s) 653
Bse1I ACTGG 3 cut(s) 197, 267, 459
Bse21I CCTNAGG 1 cut(s) 971
BseBI CCWGG 2 cut(s) 935, 1030
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 3 cut(s) 726, 739, 861
BseLI CCNNNNNNNGG 1 cut(s) 1024
BseMII CTCAG 4 cut(s) 252, 645, 848, 956
BseNI ACTGG 3 cut(s) 197, 267, 459
BseRI GAGGAG 1 cut(s) 714
BseYI CCCAGC 1 cut(s) 54
BshFI GGCC 2 cut(s) 827, 1028
BsiSI CCGG 3 cut(s) 397, 654, 731
BslI CCNNNNNNNGG 1 cut(s) 1024
BsmAI GTCTC 3 cut(s) 46, 180, 367
BsnI GGCC 2 cut(s) 827, 1028
Bsp143I GATC 4 cut(s) 35, 326, 663, 963
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 4 cut(s) 29, 480, 548, 824
BspANI GGCC 2 cut(s) 827, 1028
BspCNI CTCAG 4 cut(s) 251, 644, 849, 955
BspMAI CTGCAG 3 cut(s) 568, 586, 709
BspOI GCTAGC 1 cut(s) 414
BspPI GGATC 1 cut(s) 334
BsrBI CCGCTC 2 cut(s) 29, 480
BsrFI RCCGGY 1 cut(s) 653
BsrI ACTGG 3 cut(s) 197, 267, 459
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 4 cut(s) 35, 326, 663, 963
BssSI CACGAG 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 102
Bst2BI CACGAG 1 cut(s) 121
Bst2UI CCWGG 2 cut(s) 935, 1030
Bst4CI ACNGT 3 cut(s) 12, 22, 845
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 31, 412
BstDEI CTNAG 7 cut(s) 238, 362, 631, 857, 886, 942, 971
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 3 cut(s) 726, 739, 861
BstH2I RGCGCY 1 cut(s) 428
BstHHI GCGC 2 cut(s) 427, 601
BstKTI GATC 4 cut(s) 38, 329, 666, 966
BstMAI GTCTC 3 cut(s) 46, 180, 367
BstMBI GATC 4 cut(s) 35, 326, 663, 963
BstMWI GCNNNNNNNGC 9 cut(s) 455, 464, 548, 572, 581, 683, 716, 847, 975
BstNI CCWGG 2 cut(s) 935, 1030
BstSCI CCNGG 3 cut(s) 729, 933, 1028
BstSFI CTRYAG 3 cut(s) 564, 582, 705
Bsu36I CCTNAGG 1 cut(s) 971
BsuI GTATCC 1 cut(s) 923
BsuRI GGCC 2 cut(s) 827, 1028
BtgI CCRYGG 1 cut(s) 102
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 3 cut(s) 726, 739, 861
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 31, 412
CaiI CAGNNNCTG 2 cut(s) 376, 680
CfoI GCGC 2 cut(s) 427, 601
Cfr10I RCCGGY 1 cut(s) 653
CviAII CATG 6 cut(s) 98, 103, 185, 330, 611, 661
DdeI CTNAG 7 cut(s) 238, 362, 631, 857, 886, 942, 971
DpnI GATC 4 cut(s) 37, 328, 665, 965
DpnII GATC 4 cut(s) 35, 326, 663, 963
DraI TTTAAA 2 cut(s) 49, 1006
EaeI YGGCCR 1 cut(s) 825
Eco130I CCWWGG 1 cut(s) 102
Eco32I GATATC 2 cut(s) 394, 991
Eco47III AGCGCT 1 cut(s) 426
Eco57I CTGAAG 2 cut(s) 281, 398
Eco81I CCTNAGG 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 933, 1028
EcoRV GATATC 2 cut(s) 394, 991
EcoT14I CCWWGG 1 cut(s) 102
EcoT22I ATGCAT 1 cut(s) 1065
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 6 cut(s) 101, 106, 188, 333, 614, 664
FalI AAGNNNNNCTT 2 cut(s) 331, 363
FatI CATG 6 cut(s) 97, 102, 184, 329, 610, 660
FauI CCCGC 1 cut(s) 22
FbaI TGATCA 1 cut(s) 663
FokI GGATG 3 cut(s) 713, 746, 848
FspAI RTGCGCAY 1 cut(s) 600
FspBI CTAG 1 cut(s) 411
FspI TGCGCA 1 cut(s) 600
GlaI GCGC 2 cut(s) 426, 600
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 214
HaeII RGCGCY 1 cut(s) 428
HaeIII GGCC 2 cut(s) 827, 1028
HapII CCGG 3 cut(s) 397, 654, 731
HhaI GCGC 2 cut(s) 427, 601
Hin1II CATG 6 cut(s) 101, 106, 188, 333, 614, 664
Hin6I GCGC 2 cut(s) 425, 599
HinP1I GCGC 2 cut(s) 425, 599
HindIII AAGCTT 1 cut(s) 439
HinfI GANTC 4 cut(s) 245, 488, 587, 882
HpaII CCGG 3 cut(s) 397, 654, 731
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 159, 418
Hpy188I TCNGA 4 cut(s) 202, 250, 300, 858
Hpy188III TCNNGA 2 cut(s) 646, 801
Hpy8I GTNNAC 2 cut(s) 159, 418
HpyAV CCTTC 2 cut(s) 189, 807
HpyCH4III ACNGT 3 cut(s) 12, 22, 845
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 6 cut(s) 467, 566, 584, 686, 707, 1063
HpyF10VI GCNNNNNNNGC 9 cut(s) 455, 464, 548, 572, 581, 683, 716, 847, 975
HpyF3I CTNAG 7 cut(s) 238, 362, 631, 857, 886, 942, 971
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 6 cut(s) 101, 106, 188, 333, 614, 664
HspAI GCGC 2 cut(s) 425, 599
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 4 cut(s) 35, 326, 663, 963
LmnI GCTCC 3 cut(s) 26, 701, 975
LweI GCATC 4 cut(s) 724, 870, 883, 1050
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 4 cut(s) 433, 559, 790, 947
MalI GATC 4 cut(s) 37, 328, 665, 965
MbiI CCGCTC 2 cut(s) 29, 480
MboI GATC 4 cut(s) 35, 326, 663, 963
MboII GAAGA 9 cut(s) 263, 284, 315, 391, 394, 401, 518, 609, 822
MluCI AATT 3 cut(s) 78, 93, 757
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 4
MnlI CCTC 2 cut(s) 692, 919
Mph1103I ATGCAT 1 cut(s) 1065
MseI TTAA 4 cut(s) 48, 350, 695, 1005
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 3 cut(s) 397, 654, 731
MspR9I CCNGG 3 cut(s) 731, 935, 1030
MvaI CCWGG 2 cut(s) 935, 1030
MwoI GCNNNNNNNGC 9 cut(s) 455, 464, 548, 572, 581, 683, 716, 847, 975
NciI CCSGG 1 cut(s) 731
NcoI CCATGG 1 cut(s) 102
NdeII GATC 4 cut(s) 35, 326, 663, 963
NheI GCTAGC 1 cut(s) 410
NlaIII CATG 6 cut(s) 101, 106, 188, 333, 614, 664
NmuCI GTSAC 3 cut(s) 433, 790, 947
NsbI TGCGCA 1 cut(s) 600
NsiI ATGCAT 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 3 cut(s) 245, 488, 882
PflMI CCANNNNNTGG 1 cut(s) 1024
PfoI TCCNGGA 1 cut(s) 729
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PsiI TTATAA 1 cut(s) 281
Psp6I CCWGG 2 cut(s) 933, 1028
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 2 cut(s) 933, 1028
PstI CTGCAG 3 cut(s) 568, 586, 709
PstNI CAGNNNCTG 2 cut(s) 376, 680
PvuII CAGCTG 1 cut(s) 677
SaqAI TTAA 4 cut(s) 48, 350, 695, 1005
Sau3AI GATC 4 cut(s) 35, 326, 663, 963
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 3 cut(s) 731, 935, 1030
SfaNI GCATC 4 cut(s) 724, 870, 883, 1050
SfcI CTRYAG 3 cut(s) 564, 582, 705
SgrAI CRCCGGYG 1 cut(s) 653
Sse9I AATT 3 cut(s) 78, 93, 757
SsiI CCGC 4 cut(s) 29, 480, 548, 824
SspMI CTAG 1 cut(s) 411
StyD4I CCNGG 3 cut(s) 729, 933, 1028
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 3 cut(s) 12, 22, 845
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 836, 962
TasI AATT 3 cut(s) 78, 93, 757
TauI GCSGC 3 cut(s) 483, 551, 827
TfiI GAWTC 3 cut(s) 245, 488, 882
Tru1I TTAA 4 cut(s) 48, 350, 695, 1005
Tru9I TTAA 4 cut(s) 48, 350, 695, 1005
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 3 cut(s) 433, 790, 947
Tsp45I GTSAC 3 cut(s) 433, 790, 947
TspDTI ATGAA 2 cut(s) 86, 1026
TspRI CASTG 1 cut(s) 466
Van91I CCANNNNNTGG 1 cut(s) 1024
XapI RAATTY 1 cut(s) 757
XspI CTAG 1 cut(s) 411
Zsp2I ATGCAT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.