pycom10g21160

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016928
Physical Location & Seq
Reverse (-)
23877395 .. 23878399
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21160.3

Sequence Viewer

Length: 825 bp
ATGTCCAGCAGGGGATCTTGGTGGGGAAGCAAATCCTTAACTAGCTTACTCAGACAGCACAGACTGAAGAAGAAAGAAGATATCCGGATTCACACAGCTAGCGTTCACGCGGCGCTCTCTGTCACACGCTTGGCTGCTGCGATTGCCAGCGTTGCAGCTGCCAAGAGCGGCATAGAATCAGTAGAAGTCGGTGAAGATGGCAACCCCATCATCATAAGCGACATTGTTGCTTCTGCGGCATATCTGGTTGCTGCAGTATGTGCCGAAGCTGCAGAGTCGTTGGGTGCGCACAACACTCATGTTTCTTCTGCCATCAACTCAGGCTTGGCTATCCAAACAACCGGCGACATGATCACACTCACAGCTGATGCTGCAACATGTAATTCCCAATCCATTGAATGTTTCCTTCGTTTAAGAGGAGCGGCAGCACTCAAAGCAAGAGCCACCGCGGAATCCTATTTTCTCAAAACCCGAAATCTGCTGGAAGTAAAAAGCGAGCTATCAGTTGTCACTCCTTCTGAACAAAGTGAAGATAAATTCTTGTTTGCGGAAGCAGGAAGCACAAGATACGGGTGGGCGTCCATATACTCGAAGCACAGTCAGCTCATGCTGAGCATCCAGAGCAAGCATCTGGGATTCTTAGCAACAAGAAAGGAGTATAAGATTTTCCGTGTGAAGGAGGAAGACCAGGGAGCTCAGGATCCCGGCAACTTTTCTATCTGCCTAAGGAGCAACAATGGAGATATCAAGCTCTTGTTTAAAGATGAAAATCAAACTTTGGTTTGGACATCAAGCATTTCTTATCTCTTACAGATGCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

275

Amino Acids

29.67

Weight (kDa)

8.3

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
AccBSI CCGCTC 2 cut(s) 168, 422
AccII CGCG 2 cut(s) 110, 449
AccIII TCCGGA 1 cut(s) 84
AciI CCGC 7 cut(s) 110, 168, 236, 422, 447, 449, 548
AclWI GGATC 3 cut(s) 22, 695, 708
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 676
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 1 cut(s) 398
AjnI CCWGG 1 cut(s) 687
AluBI AGCT 9 cut(s) 45, 98, 158, 269, 365, 499, 604, 695, 751
AluI AGCT 9 cut(s) 45, 98, 158, 269, 365, 499, 604, 695, 751
Alw21I GWGCWC 1 cut(s) 697
AlwI GGATC 3 cut(s) 22, 695, 708
Aor13HI TCCGGA 1 cut(s) 84
ApeKI GCWGC 8 cut(s) 134, 137, 155, 158, 251, 269, 371, 425
ApoI RAATTY 1 cut(s) 536
AspLEI GCGC 2 cut(s) 115, 289
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 1 cut(s) 203
AsuNHI GCTAGC 1 cut(s) 98
AxyI CCTNAGG 1 cut(s) 725
BamHI GGATCC 1 cut(s) 700
BanII GRGCYC 1 cut(s) 697
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 8 cut(s) 121, 124, 145, 167, 238, 256, 358, 437
BccI CCATC 3 cut(s) 191, 215, 320
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 1 cut(s) 689
BclI TGATCA 1 cut(s) 351
BcnI CCSGG 1 cut(s) 705
BfaI CTAG 2 cut(s) 42, 99
BfmI CTRYAG 2 cut(s) 252, 270
BfoI RGCGCY 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 611
Bme1390I CCNGG 2 cut(s) 689, 705
BmiI GGNNCC 1 cut(s) 702
BmrFI CCNGG 2 cut(s) 689, 705
BmsI GCATC 4 cut(s) 358, 624, 637, 804
BmtI GCTAGC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 696
Bpu1102I GCTNAGC 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 705
BsaBI GATNNNNATC 1 cut(s) 768
BsaHI GRCGYC 1 cut(s) 578
BsaJI CCNNGG 2 cut(s) 447, 688
BsaWI WCCGGW 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse118I RCCGGY 1 cut(s) 341
Bse21I CCTNAGG 1 cut(s) 725
Bse8I GATNNNNATC 1 cut(s) 768
BseAI TCCGGA 1 cut(s) 84
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 2 cut(s) 447, 688
BseGI GGATG 1 cut(s) 615
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMII CTCAG 4 cut(s) 64, 333, 602, 710
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 8 cut(s) 121, 124, 145, 167, 238, 256, 358, 437
Bsh1236I CGCG 2 cut(s) 110, 449
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 3 cut(s) 85, 342, 705
BslI CCNNNNNNNGG 1 cut(s) 676
Bsp1286I GDGCHC 1 cut(s) 697
Bsp13I TCCGGA 1 cut(s) 84
Bsp143I GATC 3 cut(s) 14, 351, 700
Bsp1720I GCTNAGC 1 cut(s) 611
BspACI CCGC 7 cut(s) 110, 168, 236, 422, 447, 449, 548
BspCNI CTCAG 4 cut(s) 63, 332, 603, 709
BspEI TCCGGA 1 cut(s) 84
BspFNI CGCG 2 cut(s) 110, 449
BspLI GGNNCC 1 cut(s) 702
BspMAI CTGCAG 2 cut(s) 256, 274
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 3 cut(s) 22, 695, 708
BsrBI CCGCTC 2 cut(s) 168, 422
BsrFI RCCGGY 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 447, 688
BssMI GATC 3 cut(s) 14, 351, 700
BssNI GRCGYC 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 1 cut(s) 599
BstACI GRCGYC 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 4 cut(s) 100, 148, 497, 626
BstDEI CTNAG 6 cut(s) 50, 319, 611, 640, 696, 725
BstDSI CCRYGG 1 cut(s) 447
BstF5I GGATG 1 cut(s) 615
BstFNI CGCG 2 cut(s) 110, 449
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 2 cut(s) 115, 289
BstKTI GATC 3 cut(s) 17, 354, 703
BstMBI GATC 3 cut(s) 14, 351, 700
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 1 cut(s) 381
BstSCI CCNGG 2 cut(s) 687, 703
BstSFI CTRYAG 2 cut(s) 252, 270
BstUI CGCG 2 cut(s) 110, 449
BstV1I GCAGC 8 cut(s) 121, 124, 145, 167, 238, 256, 358, 437
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 2 cut(s) 14, 700
BstYI RGATCY 2 cut(s) 14, 700
Bsu36I CCTNAGG 1 cut(s) 725
BtgI CCRYGG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 615
Cac8I GCNNGC 4 cut(s) 100, 148, 497, 626
CfoI GCGC 2 cut(s) 115, 289
Cfr10I RCCGGY 1 cut(s) 341
Cfr42I CCGCGG 1 cut(s) 450
CseI GACGC 1 cut(s) 567
CviAII CATG 4 cut(s) 299, 349, 378, 607
DdeI CTNAG 6 cut(s) 50, 319, 611, 640, 696, 725
DpnI GATC 3 cut(s) 16, 353, 702
DpnII GATC 3 cut(s) 14, 351, 700
DraI TTTAAA 1 cut(s) 760
Ecl136II GAGCTC 1 cut(s) 695
Eco24I GRGCYC 1 cut(s) 697
Eco32I GATATC 2 cut(s) 82, 745
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 695
EcoRII CCWGG 1 cut(s) 687
EcoRV GATATC 2 cut(s) 82, 745
EcoT22I ATGCAT 1 cut(s) 819
EcoT38I GRGCYC 1 cut(s) 697
FaeI CATG 4 cut(s) 302, 352, 381, 610
FalI AAGNNNNNCTT 2 cut(s) 784, 816
FatI CATG 4 cut(s) 298, 348, 377, 606
FbaI TGATCA 1 cut(s) 351
FokI GGATG 1 cut(s) 602
FriOI GRGCYC 1 cut(s) 697
FspAI RTGCGCAY 1 cut(s) 288
FspBI CTAG 2 cut(s) 42, 99
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 114, 288
HaeII RGCGCY 1 cut(s) 116
HapII CCGG 3 cut(s) 85, 342, 705
HgaI GACGC 1 cut(s) 567
HhaI GCGC 2 cut(s) 115, 289
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 4 cut(s) 302, 352, 381, 610
Hin6I GCGC 2 cut(s) 113, 287
HinP1I GCGC 2 cut(s) 113, 287
HinfI GANTC 5 cut(s) 88, 176, 275, 452, 636
HpaII CCGG 3 cut(s) 85, 342, 705
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 53, 520
Hpy188III TCNNGA 3 cut(s) 85, 619, 698
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 3 cut(s) 416, 525, 670
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4V TGCA 5 cut(s) 155, 254, 272, 374, 817
HpyF3I CTNAG 6 cut(s) 50, 319, 611, 640, 696, 725
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 4 cut(s) 302, 352, 381, 610
HspAI GCGC 2 cut(s) 113, 287
Kpn2I TCCGGA 1 cut(s) 84
Ksp22I TGATCA 1 cut(s) 351
KspI CCGCGG 1 cut(s) 450
Kzo9I GATC 3 cut(s) 14, 351, 700
LmnI GCTCC 3 cut(s) 419, 692, 729
Lsp1109I GCAGC 8 cut(s) 121, 124, 145, 167, 238, 256, 358, 437
LweI GCATC 4 cut(s) 358, 624, 637, 804
MaeI CTAG 2 cut(s) 42, 99
MaeIII GTNAC 2 cut(s) 121, 508
MalI GATC 3 cut(s) 16, 353, 702
MbiI CCGCTC 2 cut(s) 168, 422
MboI GATC 3 cut(s) 14, 351, 700
MboII GAAGA 7 cut(s) 79, 82, 89, 206, 297, 542, 695
MflI RGATCY 2 cut(s) 14, 700
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 2 cut(s) 382, 536
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 2 cut(s) 410, 673
Mph1103I ATGCAT 1 cut(s) 819
MroI TCCGGA 1 cut(s) 84
MseI TTAA 3 cut(s) 38, 413, 759
MspA1I CMGCKG 3 cut(s) 158, 365, 449
MspI CCGG 3 cut(s) 85, 342, 705
MspR9I CCNGG 2 cut(s) 689, 705
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 2 cut(s) 110, 449
NciI CCSGG 1 cut(s) 705
NdeII GATC 3 cut(s) 14, 351, 700
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 4 cut(s) 302, 352, 381, 610
NlaIV GGNNCC 1 cut(s) 702
NmuCI GTSAC 2 cut(s) 121, 508
NsbI TGCGCA 1 cut(s) 288
NsiI ATGCAT 1 cut(s) 819
NspI RCATGY 1 cut(s) 381
PciI ACATGT 1 cut(s) 377
PfeI GAWTC 4 cut(s) 88, 176, 452, 636
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PscI ACATGT 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 687
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 1 cut(s) 702
PstI CTGCAG 2 cut(s) 256, 274
PsuI RGATCY 2 cut(s) 14, 700
PvuII CAGCTG 2 cut(s) 158, 365
SacI GAGCTC 1 cut(s) 697
SacII CCGCGG 1 cut(s) 450
SaqAI TTAA 3 cut(s) 38, 413, 759
Sau3AI GATC 3 cut(s) 14, 351, 700
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 689, 705
SduI GDGCHC 1 cut(s) 697
SetI ASST 9 cut(s) 47, 100, 160, 271, 367, 501, 606, 697, 753
SfaNI GCATC 4 cut(s) 358, 624, 637, 804
SfcI CTRYAG 2 cut(s) 252, 270
Sfr303I CCGCGG 1 cut(s) 450
SgrBI CCGCGG 1 cut(s) 450
Sse9I AATT 2 cut(s) 382, 536
SsiI CCGC 7 cut(s) 110, 168, 236, 422, 447, 449, 548
SspMI CTAG 2 cut(s) 42, 99
SstI GAGCTC 1 cut(s) 697
StyD4I CCNGG 2 cut(s) 687, 703
TaaI ACNGT 1 cut(s) 599
TaqI TCGA 1 cut(s) 590
TasI AATT 2 cut(s) 382, 536
TauI GCSGC 4 cut(s) 113, 171, 239, 425
TfiI GAWTC 4 cut(s) 88, 176, 452, 636
Tru1I TTAA 3 cut(s) 38, 413, 759
Tru9I TTAA 3 cut(s) 38, 413, 759
TseFI GTSAC 2 cut(s) 121, 508
TseI GCWGC 8 cut(s) 134, 137, 155, 158, 251, 269, 371, 425
Tsp45I GTSAC 2 cut(s) 121, 508
TspDTI ATGAA 1 cut(s) 780
TspGWI ACGGA 1 cut(s) 659
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 381
XspI CTAG 2 cut(s) 42, 99
Zsp2I ATGCAT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.