pycom07g27720

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0016928
Physical Location & Seq
Forward (+)
27334129 .. 27335196
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27720.4

Sequence Viewer

Length: 789 bp
ATGACGACCGGAGTTCAGCGAAACAAGACAAACAGCCGGACGATAAGTTTAGCTCAGGGGAACCCGAAGATCCGAAACTGGGGATCATGGTGGGGACGCAAATCCTTAACCAGCTTACTTAGACAGCACAGACTGAAGAAGAAAGAAGATATCCGGCTTCACACAGCTAGCGTTCATGCAGCGCTCTCTGTCACGCGCTTGGCTGCTGCGATTGCCAGCGTTGCAGCTGCCAAGAACGGCATAGAATCAGTAGAAGTCGGTGACGATGGCAATCCCATCATCATAGGCAACATTGTTGCTTCTGCGGCAGCTCTGGTTACTGCAGTATGTGCCGAAGCTGCAGAGTCGTTGGGTGCGCACACCACTCATGTTTCTTCTGCCATCAACTCAGGCTTGGCTATCCAGACCACCGGCGACATGATCACACTCACAGCCGCTGCTGCAACAAGTAATTCCCAATACATCGAATGTTTCCTTCGTTTAAGAGGAGCTGCAGCACTCAGAGCAAGAGCTATCCCGGATGCCTACTTTCCAAAAAACCGAAATTTGCTGGAAGTAAAGGCCGAACTATCAGTTGTCACTCCTTCTGAACGAAAAGAAGATAAATTATTGTTTGCTGAAGCAGGAAGCAGAAGATACGGGTGGGCGTCCGTATACTCGAAGCACAGTCAGCTCATTCTGAGCATCCAAAAGAAGCATCTGGGATTCTTAGCAACAAGAAAGGAGTGGTCACGGCAACTTTTCGATCTGCCTAAGGAGCAACAATGGAGATATCAAGCTCTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

263

Amino Acids

28.58

Weight (kDa)

10.12

Isoelectric Point (pI)

26.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
AccI GTMKAC 1 cut(s) 654
AccII CGCG 1 cut(s) 196
AciI CCGC 2 cut(s) 305, 435
AclWI GGATC 2 cut(s) 64, 91
AcsI RAATTY 1 cut(s) 544
AcuI CTGAAG 2 cut(s) 155, 639
AcyI GRCGYC 1 cut(s) 647
AfeI AGCGCT 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 79
AlwI GGATC 2 cut(s) 64, 91
AlwNI CAGNNNCTG 1 cut(s) 437
Aor51HI AGCGCT 1 cut(s) 183
AoxI GGCC 1 cut(s) 561
ApoI RAATTY 1 cut(s) 544
AspLEI GCGC 3 cut(s) 184, 198, 358
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 753
BccI CCATC 3 cut(s) 260, 284, 389
BceAI ACGGC 2 cut(s) 253, 749
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 1 cut(s) 518
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 3 cut(s) 321, 339, 492
BfoI RGCGCY 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 518
BmiI GGNNCC 1 cut(s) 62
BmrFI CCNGG 1 cut(s) 518
BmrI ACTGGG 1 cut(s) 88
BmsI GCATC 3 cut(s) 511, 693, 706
BmtI GCTAGC 1 cut(s) 171
BmuI ACTGGG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 647
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse118I RCCGGY 1 cut(s) 410
Bse1I ACTGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 753
Bse8I GATNNNNATC 1 cut(s) 270
BseGI GGATG 2 cut(s) 526, 684
BseJI GATNNNNATC 1 cut(s) 270
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 4 cut(s) 68, 402, 514, 671
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 501
Bsh1236I CGCG 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 563
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 5 cut(s) 9, 37, 154, 411, 518
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 1 cut(s) 563
Bsp143I GATC 4 cut(s) 69, 83, 420, 745
BspACI CCGC 2 cut(s) 305, 435
BspANI GGCC 1 cut(s) 563
BspCNI CTCAG 4 cut(s) 67, 401, 513, 672
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 62
BspMAI CTGCAG 3 cut(s) 325, 343, 496
BspOI GCTAGC 1 cut(s) 171
BspPI GGATC 2 cut(s) 64, 91
BsrFI RCCGGY 1 cut(s) 410
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 410
BssMI GATC 4 cut(s) 69, 83, 420, 745
BssNAI GTATAC 1 cut(s) 655
BssNI GRCGYC 1 cut(s) 647
Bst1107I GTATAC 1 cut(s) 655
Bst4CI ACNGT 1 cut(s) 668
BstACI GRCGYC 1 cut(s) 647
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 169, 217
BstDEI CTNAG 7 cut(s) 54, 119, 388, 500, 680, 709, 753
BstF5I GGATG 2 cut(s) 526, 684
BstFNI CGCG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 3 cut(s) 184, 198, 358
BstKTI GATC 4 cut(s) 72, 86, 423, 748
BstMBI GATC 4 cut(s) 69, 83, 420, 745
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 9 cut(s) 212, 221, 305, 329, 338, 440, 503, 670, 757
BstSCI CCNGG 1 cut(s) 516
BstSFI CTRYAG 3 cut(s) 321, 339, 492
BstUI CGCG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BstZ17I GTATAC 1 cut(s) 655
Bsu36I CCTNAGG 1 cut(s) 753
BsuRI GGCC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 526, 684
Cac8I GCNNGC 2 cut(s) 169, 217
CaiI CAGNNNCTG 1 cut(s) 437
CfoI GCGC 3 cut(s) 184, 198, 358
Cfr10I RCCGGY 1 cut(s) 410
CseI GACGC 2 cut(s) 105, 636
CviAII CATG 4 cut(s) 87, 176, 368, 418
DdeI CTNAG 7 cut(s) 54, 119, 388, 500, 680, 709, 753
DpnI GATC 4 cut(s) 71, 85, 422, 747
DpnII GATC 4 cut(s) 69, 83, 420, 745
Eco32I GATATC 2 cut(s) 151, 773
Eco47III AGCGCT 1 cut(s) 183
Eco57I CTGAAG 2 cut(s) 155, 639
Eco81I CCTNAGG 1 cut(s) 753
EcoRV GATATC 2 cut(s) 151, 773
FaeI CATG 4 cut(s) 90, 179, 371, 421
FaiI YATR 8 cut(s) 88, 177, 242, 284, 328, 369, 419, 655
FaqI GGGAC 1 cut(s) 108
FatI CATG 4 cut(s) 86, 175, 367, 417
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 654
FokI GGATG 2 cut(s) 533, 671
FspAI RTGCGCAY 1 cut(s) 357
FspBI CTAG 1 cut(s) 168
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 3 cut(s) 183, 197, 357
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 563
HapII CCGG 5 cut(s) 9, 37, 154, 411, 518
HgaI GACGC 2 cut(s) 105, 636
HhaI GCGC 3 cut(s) 184, 198, 358
Hin1I GRCGYC 1 cut(s) 647
Hin1II CATG 4 cut(s) 90, 179, 371, 421
Hin6I GCGC 3 cut(s) 182, 196, 356
HinP1I GCGC 3 cut(s) 182, 196, 356
HinfI GANTC 3 cut(s) 245, 344, 705
HpaII CCGG 5 cut(s) 9, 37, 154, 411, 518
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 4 cut(s) 74, 503, 589, 681
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 2 cut(s) 485, 594
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4V TGCA 6 cut(s) 179, 224, 323, 341, 443, 494
HpyF10VI GCNNNNNNNGC 9 cut(s) 212, 221, 305, 329, 338, 440, 503, 670, 757
HpyF3I CTNAG 7 cut(s) 54, 119, 388, 500, 680, 709, 753
Hsp92I GRCGYC 1 cut(s) 647
Hsp92II CATG 4 cut(s) 90, 179, 371, 421
HspAI GCGC 3 cut(s) 182, 196, 356
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 4 cut(s) 69, 83, 420, 745
LmnI GCTCC 2 cut(s) 488, 757
LweI GCATC 3 cut(s) 511, 693, 706
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 5 cut(s) 190, 260, 316, 577, 729
MalI GATC 4 cut(s) 71, 85, 422, 747
MboI GATC 4 cut(s) 69, 83, 420, 745
MboII GAAGA 7 cut(s) 79, 148, 151, 158, 366, 611, 645
MflI RGATCY 1 cut(s) 69
MluCI AATT 3 cut(s) 451, 544, 605
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 1 cut(s) 479
MseI TTAA 3 cut(s) 107, 482, 787
MspA1I CMGCKG 2 cut(s) 227, 437
MspI CCGG 5 cut(s) 9, 37, 154, 411, 518
MspR9I CCNGG 1 cut(s) 518
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 9 cut(s) 212, 221, 305, 329, 338, 440, 503, 670, 757
NciI CCSGG 1 cut(s) 518
NdeII GATC 4 cut(s) 69, 83, 420, 745
NheI GCTAGC 1 cut(s) 167
NlaIII CATG 4 cut(s) 90, 179, 371, 421
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 4 cut(s) 190, 260, 577, 729
NsbI TGCGCA 1 cut(s) 357
PfeI GAWTC 2 cut(s) 245, 705
PfoI TCCNGGA 1 cut(s) 516
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 62
PstI CTGCAG 3 cut(s) 325, 343, 496
PstNI CAGNNNCTG 1 cut(s) 437
PsuI RGATCY 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 227
SaqAI TTAA 3 cut(s) 107, 482, 787
Sau3AI GATC 4 cut(s) 69, 83, 420, 745
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 518
SfaNI GCATC 3 cut(s) 511, 693, 706
SfcI CTRYAG 3 cut(s) 321, 339, 492
SgrAI CRCCGGYG 1 cut(s) 410
Sse9I AATT 3 cut(s) 451, 544, 605
SsiI CCGC 2 cut(s) 305, 435
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 516
TaaI ACNGT 1 cut(s) 668
TaqI TCGA 3 cut(s) 465, 659, 744
TasI AATT 3 cut(s) 451, 544, 605
TauI GCSGC 2 cut(s) 308, 437
TfiI GAWTC 2 cut(s) 245, 705
Tru1I TTAA 3 cut(s) 107, 482, 787
Tru9I TTAA 3 cut(s) 107, 482, 787
TseFI GTSAC 4 cut(s) 190, 260, 577, 729
Tsp45I GTSAC 4 cut(s) 190, 260, 577, 729
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 640
XapI RAATTY 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 654
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.