MD10G1255700.v1.1

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0016928
Physical Location & Seq
Reverse (-)
35023893 .. 35025849
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1255700.v1.1.491

Sequence Viewer

Length: 969 bp
ATGAAGTTTCTCTGTCGGTCGTGGAGTCCATCTGCCTCTAACTTCCAGCAGATGTTTACATCAACTGGCGTGTCTCCGTCACATAACAACTGGAGTTCAGCCAAACAAGACGAAAAGCTGGACGATGAGTTAAGCTCAGGGGAACTCGAAGATCCAAAACTGGAGATACAAGAAGTAATGAATGAGTTTCCACTTCAGAGTAGGAGCAGTACGTCCAGCAGGGGATCTTGGTGGGGAAGCAAATCCTTAACTAGCTTACTCAGACAGCACAGACTGAAGAAGAAAGAAGATATCCGGATTCACACAGCTAGCGTTCACGCGGCTCTCTCTGTCACACGCTTGGCTGCTGCGATTGCCAGCGTTGCAGCTGCCAAGAGCGGCATAGAATCAGTAGAAGTCGGTGAAGATGGCAACCCCATCATCATAAGCGACATTCTTGCTTCTGCAGCATATCTGGTTGCTGCAGTATGTGCCGAAGCTGCAGAGTCGTTGGGTGCGCACACCACTCATGTTTCTTCTGCCATCAACTCAGGCTTGGCTATCCAAACAACCGGCGACATGATCACACTCACAGCTGATGCTGCAACATGTTTAAGAGGAGCGGCAGCACTCAAAGCAAGAGCCACCGCGGAATCCTATGTTCTCAAAACCCGAAATCTGCTAGAAGTAAAAGGCGAGCTATCAGTTGTCACTCCTTCTGGAAGCACAAGATACGGGTGGGCGTCCATATACTCGAAGCACAGTCAGCTCATGCTGAGCATCCAGAAGAAGCATCTGGGATTCTTAGCAACAAGAAAGGAGTATAAGATTTTCCGTGTGAAGGAGGGAGAACAGGAAGCTCAGGGTTCCGGCAACTTTTCTATCTGCCTAAGGAGCAACAGTGGAGATATCAAGCTCTTGTTTAAAGATGAAAATCAAACTTTGGTTTGGACATCAAGCATTTCTAAACTCTTACAGATGCATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

323

Amino Acids

34.85

Weight (kDa)

8.58

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 24 - 211 3.2e-40 Auxin canalisation
PH_2 PF08458 226 - 320 2.9e-09 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 498
AccBSI CCGCTC 2 cut(s) 378, 602
AccII CGCG 2 cut(s) 320, 629
AccIII TCCGGA 1 cut(s) 294
AciI CCGC 5 cut(s) 320, 378, 602, 627, 629
AclWI GGATC 2 cut(s) 146, 232
AcuI CTGAAG 2 cut(s) 179, 296
AcyI GRCGYC 1 cut(s) 722
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 820
AflIII ACRYGT 1 cut(s) 587
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 2 cut(s) 146, 232
Aor13HI TCCGGA 1 cut(s) 294
ApeKI GCWGC 9 cut(s) 344, 347, 365, 368, 446, 461, 479, 581, 605
AspLEI GCGC 1 cut(s) 499
AsuHPI GGTGA 1 cut(s) 413
AsuNHI GCTAGC 1 cut(s) 308
AxyI CCTNAGG 1 cut(s) 869
BbvI GCAGC 9 cut(s) 331, 334, 355, 377, 448, 458, 466, 568, 617
BccI CCATC 4 cut(s) 37, 401, 425, 530
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BclI TGATCA 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 3 cut(s) 252, 309, 662
BfmI CTRYAG 3 cut(s) 444, 462, 480
BlpI GCTNAGC 1 cut(s) 755
BmiI GGNNCC 1 cut(s) 847
BmsI GCATC 4 cut(s) 568, 768, 781, 948
BmtI GCTAGC 1 cut(s) 312
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 2 cut(s) 112, 182
Bpu10I CCTNAGC 2 cut(s) 136, 840
Bpu1102I GCTNAGC 1 cut(s) 755
BsaBI GATNNNNATC 1 cut(s) 912
BsaHI GRCGYC 1 cut(s) 722
BsaJI CCNNGG 1 cut(s) 627
BsaWI WCCGGW 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 865, 895
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 3 cut(s) 70, 95, 165
Bse21I CCTNAGG 1 cut(s) 869
Bse8I GATNNNNATC 1 cut(s) 912
BseAI TCCGGA 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 1 cut(s) 759
BseJI GATNNNNATC 1 cut(s) 912
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMII CTCAG 5 cut(s) 150, 274, 543, 746, 854
BseNI ACTGG 3 cut(s) 70, 95, 165
BseRI GAGGAG 1 cut(s) 612
BseXI GCAGC 9 cut(s) 331, 334, 355, 377, 448, 458, 466, 568, 617
Bsh1236I CGCG 2 cut(s) 320, 629
Bsh1285I CGRYCG 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 20
BsiSI CCGG 3 cut(s) 295, 552, 849
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 294
Bsp143I GATC 3 cut(s) 151, 224, 561
Bsp1720I GCTNAGC 1 cut(s) 755
BspACI CCGC 5 cut(s) 320, 378, 602, 627, 629
BspCNI CTCAG 5 cut(s) 149, 273, 542, 747, 853
BspEI TCCGGA 1 cut(s) 294
BspFNI CGCG 2 cut(s) 320, 629
BspLI GGNNCC 1 cut(s) 847
BspMAI CTGCAG 3 cut(s) 448, 466, 484
BspOI GCTAGC 1 cut(s) 312
BspPI GGATC 2 cut(s) 146, 232
BsrBI CCGCTC 2 cut(s) 378, 602
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 3 cut(s) 70, 95, 165
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 3 cut(s) 151, 224, 561
BssNI GRCGYC 1 cut(s) 722
Bst4CI ACNGT 2 cut(s) 743, 881
BstACI GRCGYC 1 cut(s) 722
BstAPI GCANNNNNTGC 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 310, 358, 677
BstDEI CTNAG 7 cut(s) 136, 260, 529, 755, 784, 840, 869
BstDSI CCRYGG 1 cut(s) 627
BstF5I GGATG 1 cut(s) 759
BstFNI CGCG 2 cut(s) 320, 629
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 3 cut(s) 154, 227, 564
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 3 cut(s) 151, 224, 561
BstMCI CGRYCG 1 cut(s) 20
BstMWI GCNNNNNNNGC 9 cut(s) 353, 362, 446, 470, 479, 581, 614, 745, 873
BstNSI RCATGY 1 cut(s) 591
BstSFI CTRYAG 3 cut(s) 444, 462, 480
BstUI CGCG 2 cut(s) 320, 629
BstV1I GCAGC 9 cut(s) 331, 334, 355, 377, 448, 458, 466, 568, 617
BstX2I RGATCY 2 cut(s) 151, 224
BstYI RGATCY 2 cut(s) 151, 224
Bsu36I CCTNAGG 1 cut(s) 869
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 759
BtsIMutI CAGTG 1 cut(s) 886
Cac8I GCNNGC 3 cut(s) 310, 358, 677
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 551
Cfr42I CCGCGG 1 cut(s) 630
CseI GACGC 1 cut(s) 711
Csp6I GTAC 1 cut(s) 210
CviAII CATG 4 cut(s) 509, 559, 588, 751
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 7 cut(s) 136, 260, 529, 755, 784, 840, 869
DpnI GATC 3 cut(s) 153, 226, 563
DpnII GATC 3 cut(s) 151, 224, 561
DraI TTTAAA 1 cut(s) 904
Eco32I GATATC 2 cut(s) 292, 889
Eco57I CTGAAG 2 cut(s) 179, 296
Eco81I CCTNAGG 1 cut(s) 869
EcoRV GATATC 2 cut(s) 292, 889
EcoT22I ATGCAT 1 cut(s) 963
FaeI CATG 4 cut(s) 512, 562, 591, 754
FatI CATG 4 cut(s) 508, 558, 587, 750
FbaI TGATCA 1 cut(s) 561
FokI GGATG 1 cut(s) 746
FspAI RTGCGCAY 1 cut(s) 498
FspBI CTAG 3 cut(s) 252, 309, 662
FspI TGCGCA 1 cut(s) 498
GlaI GCGC 1 cut(s) 498
GsuI CTGGAG 2 cut(s) 112, 182
HapII CCGG 3 cut(s) 295, 552, 849
HgaI GACGC 1 cut(s) 711
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 1 cut(s) 722
Hin1II CATG 4 cut(s) 512, 562, 591, 754
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HinfI GANTC 6 cut(s) 25, 298, 386, 485, 632, 780
HpaII CCGG 3 cut(s) 295, 552, 849
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 2 cut(s) 57, 316
Hpy188I TCNGA 2 cut(s) 198, 263
Hpy188III TCNNGA 3 cut(s) 295, 699, 763
Hpy8I GTNNAC 2 cut(s) 57, 316
HpyAV CCTTC 2 cut(s) 705, 814
HpyCH4III ACNGT 2 cut(s) 743, 881
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 6 cut(s) 365, 446, 464, 482, 584, 961
HpyF10VI GCNNNNNNNGC 9 cut(s) 353, 362, 446, 470, 479, 581, 614, 745, 873
HpyF3I CTNAG 7 cut(s) 136, 260, 529, 755, 784, 840, 869
HpySE526I ACGT 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 722
Hsp92II CATG 4 cut(s) 512, 562, 591, 754
HspAI GCGC 1 cut(s) 497
Kpn2I TCCGGA 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 561
KspI CCGCGG 1 cut(s) 630
Kzo9I GATC 3 cut(s) 151, 224, 561
LmnI GCTCC 3 cut(s) 204, 599, 873
Lsp1109I GCAGC 9 cut(s) 331, 334, 355, 377, 448, 458, 466, 568, 617
LweI GCATC 4 cut(s) 568, 768, 781, 948
MaeI CTAG 3 cut(s) 252, 309, 662
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 3 cut(s) 78, 331, 688
MalI GATC 3 cut(s) 153, 226, 563
MbiI CCGCTC 2 cut(s) 378, 602
MboI GATC 3 cut(s) 151, 224, 561
MboII GAAGA 7 cut(s) 161, 289, 292, 299, 416, 507, 778
MflI RGATCY 2 cut(s) 151, 224
MlyI GAGTC 2 cut(s) 34, 494
MnlI CCTC 3 cut(s) 46, 590, 817
Mph1103I ATGCAT 1 cut(s) 963
MroI TCCGGA 1 cut(s) 294
MseI TTAA 4 cut(s) 131, 248, 593, 903
MspA1I CMGCKG 3 cut(s) 368, 575, 629
MspI CCGG 3 cut(s) 295, 552, 849
MvnI CGCG 2 cut(s) 320, 629
MwoI GCNNNNNNNGC 9 cut(s) 353, 362, 446, 470, 479, 581, 614, 745, 873
NdeII GATC 3 cut(s) 151, 224, 561
NheI GCTAGC 1 cut(s) 308
NlaIII CATG 4 cut(s) 512, 562, 591, 754
NlaIV GGNNCC 1 cut(s) 847
NmuCI GTSAC 3 cut(s) 78, 331, 688
NsbI TGCGCA 1 cut(s) 498
NsiI ATGCAT 1 cut(s) 963
NspI RCATGY 1 cut(s) 591
PciI ACATGT 1 cut(s) 587
PfeI GAWTC 4 cut(s) 298, 386, 632, 780
PleI GAGTC 2 cut(s) 33, 493
PpsI GAGTC 2 cut(s) 33, 493
PscI ACATGT 1 cut(s) 587
PspN4I GGNNCC 1 cut(s) 847
PstI CTGCAG 3 cut(s) 448, 466, 484
PsuI RGATCY 2 cut(s) 151, 224
PvuII CAGCTG 2 cut(s) 368, 575
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SacII CCGCGG 1 cut(s) 630
SaqAI TTAA 4 cut(s) 131, 248, 593, 903
Sau3AI GATC 3 cut(s) 151, 224, 561
SchI GAGTC 2 cut(s) 34, 494
SfaNI GCATC 4 cut(s) 568, 768, 781, 948
SfcI CTRYAG 3 cut(s) 444, 462, 480
Sfr303I CCGCGG 1 cut(s) 630
SgrBI CCGCGG 1 cut(s) 630
SsiI CCGC 5 cut(s) 320, 378, 602, 627, 629
SspMI CTAG 3 cut(s) 252, 309, 662
TaaI ACNGT 2 cut(s) 743, 881
TaiI ACGT 1 cut(s) 215
TaqI TCGA 2 cut(s) 147, 734
TaqII GACCGA 1 cut(s) 6
TauI GCSGC 3 cut(s) 323, 381, 605
TfiI GAWTC 4 cut(s) 298, 386, 632, 780
Tru1I TTAA 4 cut(s) 131, 248, 593, 903
Tru9I TTAA 4 cut(s) 131, 248, 593, 903
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 3 cut(s) 78, 331, 688
TseI GCWGC 9 cut(s) 344, 347, 365, 368, 446, 461, 479, 581, 605
Tsp45I GTSAC 3 cut(s) 78, 331, 688
TspDTI ATGAA 3 cut(s) 17, 194, 924
TspGWI ACGGA 2 cut(s) 66, 803
TspRI CASTG 1 cut(s) 886
XceI RCATGY 1 cut(s) 591
XspI CTAG 3 cut(s) 252, 309, 662
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.