Rh1DG457100

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016928
Physical Location & Seq
Forward (+)
66223780 .. 66225494
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG457100.1

Sequence Viewer

Length: 1209 bp
ATGCATAGTCATATGGAGGAAACACCGGGCAGATCAGTCTCCTTCAAAACTCAGCATCAATCAACCAACACAGTGAGAAACGGAAAGCTGGAGTCTAGGCGCAGAGCAGACCAATGCTCCTTACAGAGAAGAGAAACATTATCGCCGTCTTCTTCTTCTTCTTGCTGCAGCTCCTTGGGGATTCCTCATAGCCCCATCCGTGCCATGGAGTTTCTAAGTCGCTCATGGAGCCCCTCTGCCTATAACTTTCAACAGATGTTTCCATCCAGTATCAACATGTTCCCTTCACATGAAGAAAAGTTGGATGATGAGTTTAGCTTCGAGGGACCAGAAGAAAAGCTAGAGACAGAAGCAATACAGTTTGAGTTGCCACCCGAAAGTAGCAGGAGAAGCACTTTCAGTAGCCGCACTAGCAGGGTGGATAACATATGGACGAATACAAAGGGATGGTTAGGGGGGAAATCCATAACTAGCTTATTAAGACGGAACAAAGCCAAGAAGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCTGTCACACGCTTGGCTGCAGCTATCGCCAGTGTTGCTGCAACCAAGAGCAGCATAGACTCAGAATCAGAATCAGCGCAAGATATTGGCAATCAAGGTACTGTACTTCAATCAAGGAACAACATAGACGACATTTTTGCTTCTGCGGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACCGGCGACATGATCACACTCACAGCTGACGCTGCAACACGTTTAAGAGGAGTTGCAGCACTCAGGGCAAGAGCCAAGGCATATGCGTATTTTCCAAGAACCCAAAATTTTCTTCCAGTAAAAGCAGAGCTATCTGTCGTCACTCCTTCTGGAAGCAAAAGATACGGCTGGGCCTCCATATATTCAAAGCATAGTCAGCTCATTTTGAGCCTCCAGAAGAAGCATTTGGGATTCTTAGCCACAACAACAGAATACAAGATTTTGCATGTCGAGGAGGGAACAAGGGAAGTTCAGGGAAACCTTTCAATCAGCCTAAGGAGCAACAGTGGATACATCAAGCTCTTGTTCAAAGATGAAAACCAATCTTTAGTCTGGATGACAAGCATTTCTAGTCTCTTACAGTTGCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

402

Amino Acids

44.3

Weight (kDa)

9.17

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 139 - 291 2.1e-33 Auxin canalisation
PH_2 PF08458 308 - 400 2.6e-07 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 406, 692
AcsI RAATTY 1 cut(s) 901
AcuI CTGAAG 1 cut(s) 741
AfaI GTAC 2 cut(s) 646, 651
AfiI CCNNNNNNNGG 1 cut(s) 205
AflIII ACRYGT 2 cut(s) 276, 833
AgsI TTSAA 7 cut(s) 46, 251, 521, 656, 981, 1101, 1144
AjuI GAANNNNNNNTTGG 4 cut(s) 891, 923, 1004, 1036
Alw26I GTCTC 3 cut(s) 43, 338, 1193
AoxI GGCC 1 cut(s) 966
ApoI RAATTY 1 cut(s) 901
ArsI GACNNNNNNTTYG 2 cut(s) 665, 697
Asp700I GAANNNNTTC 1 cut(s) 1096
AspLEI GCGC 3 cut(s) 102, 625, 745
AspS9I GGNCC 2 cut(s) 326, 966
AsuC2I CCSGG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 141
BccI CCATC 3 cut(s) 203, 271, 441
BceAI ACGGC 2 cut(s) 130, 976
BcgI CGANNNNNNTGC 2 cut(s) 665, 699
BciVI GTATCC 1 cut(s) 1118
BclI TGATCA 1 cut(s) 807
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 43, 338, 1193
BfaI CTAG 5 cut(s) 96, 341, 411, 471, 1185
BfmI CTRYAG 2 cut(s) 166, 564
BfuI GTATCC 1 cut(s) 1118
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 326, 966
BmiI GGNNCC 2 cut(s) 230, 327
BmrFI CCNGG 1 cut(s) 27
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 2 cut(s) 110, 992
BpuMI CCSGG 1 cut(s) 27
Bsa29I ATCGAT 1 cut(s) 753
BsaJI CCNNGG 3 cut(s) 174, 204, 870
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 1105, 1135
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 797
Bse1I ACTGG 3 cut(s) 267, 576, 911
Bse21I CCTNAGG 1 cut(s) 1109
BseCI ATCGAT 1 cut(s) 753
BseDI CCNNGG 3 cut(s) 174, 204, 870
BseGI GGATG 6 cut(s) 195, 263, 310, 452, 514, 1176
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 5 cut(s) 65, 621, 720, 789, 871
BseNI ACTGG 3 cut(s) 267, 576, 911
BseRI GAGGAG 2 cut(s) 858, 1082
BseYI CCCAGC 2 cut(s) 780, 963
BshFI GGCC 1 cut(s) 968
BshVI ATCGAT 1 cut(s) 753
BsiSI CCGG 2 cut(s) 26, 798
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 3 cut(s) 43, 338, 1193
BsmFI GGGAC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 32, 807
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 2 cut(s) 406, 692
BspANI GGCC 1 cut(s) 968
BspCNI CTCAG 5 cut(s) 64, 620, 721, 788, 870
BspDI ATCGAT 1 cut(s) 753
BspLI GGNNCC 2 cut(s) 230, 327
BspMAI CTGCAG 2 cut(s) 170, 568
BsrFI RCCGGY 1 cut(s) 797
BsrI ACTGG 3 cut(s) 267, 576, 911
BssAI RCCGGY 1 cut(s) 797
BssECI CCNNGG 3 cut(s) 174, 204, 870
BssMI GATC 2 cut(s) 32, 807
BssT1I CCWWGG 3 cut(s) 174, 204, 870
Bst4CI ACNGT 6 cut(s) 73, 360, 649, 712, 1121, 1197
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 8 cut(s) 51, 215, 607, 729, 775, 857, 1030, 1109
BstDSI CCRYGG 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 703
BstF5I GGATG 6 cut(s) 195, 263, 310, 452, 514, 1176
BstHHI GCGC 3 cut(s) 102, 625, 745
BstKTI GATC 2 cut(s) 35, 810
BstMAI GTCTC 3 cut(s) 43, 338, 1193
BstMBI GATC 2 cut(s) 32, 807
BstNSI RCATGY 2 cut(s) 280, 1064
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 2 cut(s) 166, 564
BstV2I GAAGAC 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 753
Bsu36I CCTNAGG 1 cut(s) 1109
BsuI GTATCC 1 cut(s) 1118
BsuRI GGCC 1 cut(s) 968
BsuTUI ATCGAT 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 6 cut(s) 195, 263, 310, 452, 514, 1176
BtsIMutI CAGTG 3 cut(s) 78, 583, 1126
Cac8I GCNNGC 1 cut(s) 529
CfoI GCGC 3 cut(s) 102, 625, 745
Cfr10I RCCGGY 1 cut(s) 797
Cfr13I GGNCC 2 cut(s) 326, 966
ClaI ATCGAT 1 cut(s) 753
CseI GACGC 1 cut(s) 833
Csp6I GTAC 2 cut(s) 645, 650
CviAII CATG 7 cut(s) 205, 225, 277, 290, 536, 805, 1061
CviQI GTAC 2 cut(s) 645, 650
DdeI CTNAG 8 cut(s) 51, 215, 607, 729, 775, 857, 1030, 1109
DpnI GATC 2 cut(s) 34, 809
DpnII GATC 2 cut(s) 32, 807
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 3 cut(s) 174, 204, 870
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 741
Eco81I CCTNAGG 1 cut(s) 1109
Eco91I GGTNACC 1 cut(s) 703
EcoO65I GGTNACC 1 cut(s) 703
EcoT14I CCWWGG 3 cut(s) 174, 204, 870
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 3 cut(s) 174, 204, 870
FaeI CATG 7 cut(s) 208, 228, 280, 293, 539, 808, 1064
FaqI GGGAC 1 cut(s) 339
FatI CATG 7 cut(s) 204, 224, 276, 289, 535, 804, 1060
FauNDI CATATG 3 cut(s) 12, 428, 877
FbaI TGATCA 1 cut(s) 807
FokI GGATG 6 cut(s) 182, 250, 317, 459, 521, 1183
FriOI GRGCYC 1 cut(s) 233
FspBI CTAG 5 cut(s) 96, 341, 411, 471, 1185
GlaI GCGC 3 cut(s) 101, 624, 744
GsaI CCCAGC 2 cut(s) 784, 967
GsuI CTGGAG 2 cut(s) 110, 992
HaeIII GGCC 1 cut(s) 968
HapII CCGG 2 cut(s) 26, 798
HgaI GACGC 1 cut(s) 833
HhaI GCGC 3 cut(s) 102, 625, 745
Hin1II CATG 7 cut(s) 208, 228, 280, 293, 539, 808, 1064
Hin6I GCGC 3 cut(s) 100, 623, 743
HinP1I GCGC 3 cut(s) 100, 623, 743
HinfI GANTC 7 cut(s) 92, 181, 605, 611, 617, 731, 1026
HpaII CCGG 2 cut(s) 26, 798
Hpy188I TCNGA 2 cut(s) 610, 616
Hpy188III TCNNGA 3 cut(s) 945, 1009, 1168
HpyAV CCTTC 3 cut(s) 52, 294, 951
HpyCH4III ACNGT 6 cut(s) 73, 360, 649, 712, 1121, 1197
HpyCH4IV ACGT 1 cut(s) 835
HpyCH4V TGCA 8 cut(s) 4, 168, 566, 587, 830, 851, 1060, 1201
HpyF3I CTNAG 8 cut(s) 51, 215, 607, 729, 775, 857, 1030, 1109
HpySE526I ACGT 1 cut(s) 835
Hsp92II CATG 7 cut(s) 208, 228, 280, 293, 539, 808, 1064
HspAI GCGC 3 cut(s) 100, 623, 743
Ksp22I TGATCA 1 cut(s) 807
Kzo9I GATC 2 cut(s) 32, 807
LmnI GCTCC 4 cut(s) 122, 176, 228, 1113
LweI GCATC 1 cut(s) 64
MaeI CTAG 5 cut(s) 96, 341, 411, 471, 1185
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 3 cut(s) 550, 703, 934
MalI GATC 2 cut(s) 34, 809
MboI GATC 2 cut(s) 32, 807
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 901
MlyI GAGTC 3 cut(s) 101, 599, 740
MmeI TCCRAC 1 cut(s) 282
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 1096
MseI TTAA 3 cut(s) 479, 771, 839
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 2 cut(s) 26, 798
MspR9I CCNGG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 531
NciI CCSGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 204
NdeI CATATG 3 cut(s) 12, 428, 877
NdeII GATC 2 cut(s) 32, 807
NlaIII CATG 7 cut(s) 208, 228, 280, 293, 539, 808, 1064
NlaIV GGNNCC 2 cut(s) 230, 327
NmuCI GTSAC 2 cut(s) 550, 934
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 280, 1064
PciI ACATGT 1 cut(s) 276
PctI GAATGC 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 1096
PfeI GAWTC 4 cut(s) 181, 611, 617, 1026
PleI GAGTC 3 cut(s) 100, 599, 739
PpsI GAGTC 3 cut(s) 100, 599, 739
PscI ACATGT 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 703
PspFI CCCAGC 2 cut(s) 780, 963
PspN4I GGNNCC 2 cut(s) 230, 327
PspPI GGNCC 2 cut(s) 326, 966
PstI CTGCAG 2 cut(s) 170, 568
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 2 cut(s) 646, 651
RsaNI GTAC 2 cut(s) 645, 650
SaqAI TTAA 3 cut(s) 479, 771, 839
Sau3AI GATC 2 cut(s) 32, 807
Sau96I GGNCC 2 cut(s) 326, 966
SchI GAGTC 3 cut(s) 101, 599, 740
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 166, 564
SinI GGWCC 1 cut(s) 326
Sse9I AATT 1 cut(s) 901
SsiI CCGC 2 cut(s) 406, 692
SspMI CTAG 5 cut(s) 96, 341, 411, 471, 1185
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 3 cut(s) 174, 204, 870
TaaI ACNGT 6 cut(s) 73, 360, 649, 712, 1121, 1197
TaiI ACGT 1 cut(s) 838
TaqI TCGA 4 cut(s) 321, 514, 753, 1065
TasI AATT 1 cut(s) 901
TatI WGTACW 1 cut(s) 649
TauI GCSGC 2 cut(s) 408, 695
TfiI GAWTC 4 cut(s) 181, 611, 617, 1026
Tru1I TTAA 3 cut(s) 479, 771, 839
Tru9I TTAA 3 cut(s) 479, 771, 839
TscAI CASTG 3 cut(s) 78, 583, 1126
TseFI GTSAC 2 cut(s) 550, 934
Tsp45I GTSAC 2 cut(s) 550, 934
TspDTI ATGAA 3 cut(s) 306, 524, 1164
TspGWI ACGGA 3 cut(s) 96, 188, 499
TspRI CASTG 3 cut(s) 78, 583, 1126
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 901
XceI RCATGY 2 cut(s) 280, 1064
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 1096
XspI CTAG 5 cut(s) 96, 341, 411, 471, 1185
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.