RLG00000026106

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016928
Physical Location & Seq
Reverse (-)
569107 .. 570821
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026106

Sequence Viewer

Length: 1197 bp
ATGGAGGAAACACCAGGCAGATCAGTCTCCTTAAAAACTCGGGATCAATCAACTAACACAGTGAGAAATGGAAAGCTGGAGTCTAGGCGCAGAGCAGACCAATGCTCCTTACAGAGAAGAGAAACATTATCTCCGTCTTCTTCTTCTTCTTGCTGCAGCTCCCTAGGGATTCCACATAGCCCCATCCGTGCCATGGAGTTTCTAAGTCGCTCATGGAGCCCCTCTGCCTATAACTTTCAACAGATGTTTCCATCCAGTATCAAAATGTTCCCTTCACATGAAGAAAAGTTGGATGATGAGTTTAGCTTCGAGGGACCAGAAGAAAAGCTAGAGACAGAAGCAATACACTTTGAGTTGCCACCGGAAAGTAGCAGGAGAAGCGCTTTCAGTAGCAGAACTAGCAGGGTGGATAACATATGGACGAATACAAAGGAATGGTTAGGGGGAAAATCCATAACTAGTTTATTAAGACGGAACAAAGCCAAGAAGAAAGAGGATGTTCGACTTCAAACAGCAAGCATTCATGCTGCCCTTTCCGTCACACGCTTGGCTGCAGCAATCGCAAGTGTTGCTGCAGCCAAGAGCAGCATAGACTCAGAATCAGAATCAGCACAAGATACTGGCAATCAAGGTACGGCACTTCAATCAAGGAACAACATAGACGACATTTTTGCTTCTGCTGCAGCTCTGGTTACCACAGTTTGTGCTGAAGCTGCTGAGTCATTGGGGGCGCAGACAATCGATGTTTCTTCTGCCATTAACTCAGGCTGGGCTACCCAAACAACTGGCGACATGATCACACTCACAGCTGATGCTGCAACATGTTTAAGAGGAGTTGCAGCACTCAAAGCAAGAGCTAAGGCCGATGCGTATTTTCCAAGAACCCAAAACTTTCCTCAAGTAAAAGCAGAGCTATCTGTCGTCACTCCTTCTGGAAGCAAAAGATACGGCTGGGCCTCCATATATTCAAAGCATAGTCAGCTCATTTTGAGCCTCCAGAAGAAGCATTTGGGATTCTTAGCCACAACAAAGGAATACAAGATTTTGCGTGTGGAGGAGGGAACAAGGGAAGCTCAGGGAAACCTTTCAATCAGCCTAAGGAGCAACAGTGGATACATCAAGCTCTTGTTCAAAGATGAAAACCAATCTTTAGTCTGGACGGCAAGCATTTCTAGTCTCTTACAATTGCATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

399

Amino Acids

43.62

Weight (kDa)

9.08

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_canalis PF05703 135 - 288 1.4e-33 Auxin canalisation
PH_2 PF08458 304 - 396 9e-08 Plant pleckstrin homology-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 51
AcuI CTGAAG 1 cut(s) 729
AfaI GTAC 1 cut(s) 634
AfeI AGCGCT 1 cut(s) 382
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 821
AgsI TTSAA 6 cut(s) 239, 509, 644, 969, 1089, 1132
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 992, 1024
Alw26I GTCTC 3 cut(s) 31, 326, 1181
AlwI GGATC 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 39
Aor51HI AGCGCT 1 cut(s) 382
AoxI GGCC 2 cut(s) 861, 954
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
Asp700I GAANNNNTTC 1 cut(s) 1084
AspA2I CCTAGG 1 cut(s) 163
AspLEI GCGC 3 cut(s) 90, 383, 733
AspS9I GGNCC 2 cut(s) 314, 954
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 314
AvrII CCTAGG 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 1097
BanII GRGCYC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 129
BccI CCATC 2 cut(s) 191, 259
BceAI ACGGC 3 cut(s) 651, 964, 1176
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BciT130I CCWGG 1 cut(s) 15
BciVI GTATCC 1 cut(s) 1106
BclI TGATCA 1 cut(s) 795
BcoDI GTCTC 3 cut(s) 31, 326, 1181
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 6 cut(s) 84, 164, 329, 399, 459, 1173
BfmI CTRYAG 4 cut(s) 154, 552, 573, 681
BfoI RGCGCY 1 cut(s) 384
BfuI GTATCC 1 cut(s) 1106
BlnI CCTAGG 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 2 cut(s) 314, 954
BmiI GGNNCC 2 cut(s) 218, 315
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 2 cut(s) 802, 856
BpiI GAAGAC 1 cut(s) 129
BpmI CTGGAG 2 cut(s) 98, 980
Bpu10I CCTNAGC 2 cut(s) 858, 1074
BpuEI CTTGAG 1 cut(s) 882
Bsa29I ATCGAT 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 163, 192
BsaWI WCCGGW 1 cut(s) 361
BsaXI ACNNNNNCTCC 6 cut(s) 89, 115, 119, 145, 1093, 1123
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 255, 625, 790
Bse21I CCTNAGG 1 cut(s) 1097
BseBI CCWGG 1 cut(s) 15
BseCI ATCGAT 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 163, 192
BseGI GGATG 4 cut(s) 183, 251, 298, 502
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 4 cut(s) 609, 708, 777, 1088
BseNI ACTGG 3 cut(s) 255, 625, 790
BseRI GAGGAG 2 cut(s) 846, 1070
BseYI CCCAGC 2 cut(s) 768, 951
BshFI GGCC 2 cut(s) 863, 956
BshVI ATCGAT 1 cut(s) 741
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 3 cut(s) 31, 326, 1181
BsmFI GGGAC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 2 cut(s) 863, 956
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 221
Bsp143I GATC 3 cut(s) 20, 43, 795
Bsp19I CCATGG 1 cut(s) 192
BspANI GGCC 2 cut(s) 863, 956
BspCNI CTCAG 4 cut(s) 608, 709, 776, 1087
BspDI ATCGAT 1 cut(s) 741
BspLI GGNNCC 2 cut(s) 218, 315
BspMAI CTGCAG 4 cut(s) 158, 556, 577, 685
BspPI GGATC 1 cut(s) 51
BsrI ACTGG 3 cut(s) 255, 625, 790
BssECI CCNNGG 2 cut(s) 163, 192
BssMI GATC 3 cut(s) 20, 43, 795
BssT1I CCWWGG 2 cut(s) 163, 192
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 3 cut(s) 61, 700, 1109
Bst6I CTCTTC 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 569
BstC8I GCNNGC 2 cut(s) 517, 1165
BstDEI CTNAG 8 cut(s) 203, 595, 717, 763, 858, 1018, 1074, 1097
BstDSI CCRYGG 1 cut(s) 192
BstEII GGTNACC 1 cut(s) 691
BstF5I GGATG 4 cut(s) 183, 251, 298, 502
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 3 cut(s) 90, 383, 733
BstKTI GATC 3 cut(s) 23, 46, 798
BstMAI GTCTC 3 cut(s) 31, 326, 1181
BstMBI GATC 3 cut(s) 20, 43, 795
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 825
BstPI GGTNACC 1 cut(s) 691
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 4 cut(s) 154, 552, 573, 681
BstV2I GAAGAC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 785
Bsu15I ATCGAT 1 cut(s) 741
Bsu36I CCTNAGG 1 cut(s) 1097
BsuI GTATCC 1 cut(s) 1106
BsuRI GGCC 2 cut(s) 863, 956
BsuTUI ATCGAT 1 cut(s) 741
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 4 cut(s) 183, 251, 298, 502
BtsIMutI CAGTG 2 cut(s) 66, 1114
Cac8I GCNNGC 2 cut(s) 517, 1165
CfoI GCGC 3 cut(s) 90, 383, 733
Cfr13I GGNCC 2 cut(s) 314, 954
ClaI ATCGAT 1 cut(s) 741
Csp6I GTAC 1 cut(s) 633
CviAII CATG 6 cut(s) 193, 213, 278, 524, 793, 822
CviQI GTAC 1 cut(s) 633
DdeI CTNAG 8 cut(s) 203, 595, 717, 763, 858, 1018, 1074, 1097
DpnI GATC 3 cut(s) 22, 45, 797
DpnII GATC 3 cut(s) 20, 43, 795
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 2 cut(s) 163, 192
Eco24I GRGCYC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 314
Eco47III AGCGCT 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 729
Eco81I CCTNAGG 1 cut(s) 1097
Eco88I CYCGRG 1 cut(s) 39
Eco91I GGTNACC 1 cut(s) 691
EcoO65I GGTNACC 1 cut(s) 691
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 163, 192
EcoT38I GRGCYC 1 cut(s) 221
ErhI CCWWGG 2 cut(s) 163, 192
FaeI CATG 6 cut(s) 196, 216, 281, 527, 796, 825
FaqI GGGAC 1 cut(s) 327
FatI CATG 6 cut(s) 192, 212, 277, 523, 792, 821
FauNDI CATATG 1 cut(s) 416
FbaI TGATCA 1 cut(s) 795
FokI GGATG 4 cut(s) 170, 238, 305, 509
FriOI GRGCYC 1 cut(s) 221
FspBI CTAG 6 cut(s) 84, 164, 329, 399, 459, 1173
GlaI GCGC 3 cut(s) 89, 382, 732
GsaI CCCAGC 2 cut(s) 772, 955
GsuI CTGGAG 2 cut(s) 98, 980
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 2 cut(s) 863, 956
HapII CCGG 1 cut(s) 362
HhaI GCGC 3 cut(s) 90, 383, 733
Hin1II CATG 6 cut(s) 196, 216, 281, 527, 796, 825
Hin6I GCGC 3 cut(s) 88, 381, 731
HinP1I GCGC 3 cut(s) 88, 381, 731
HinfI GANTC 7 cut(s) 80, 169, 593, 599, 605, 719, 1014
HpaII CCGG 1 cut(s) 362
Hpy188I TCNGA 2 cut(s) 598, 604
Hpy188III TCNNGA 4 cut(s) 41, 933, 997, 1156
HpyAV CCTTC 2 cut(s) 282, 939
HpyCH4III ACNGT 3 cut(s) 61, 700, 1109
HpyCH4V TGCA 7 cut(s) 156, 554, 575, 683, 818, 839, 1189
HpyF3I CTNAG 8 cut(s) 203, 595, 717, 763, 858, 1018, 1074, 1097
Hsp92II CATG 6 cut(s) 196, 216, 281, 527, 796, 825
HspAI GCGC 3 cut(s) 88, 381, 731
Ksp22I TGATCA 1 cut(s) 795
Kzo9I GATC 3 cut(s) 20, 43, 795
LmnI GCTCC 4 cut(s) 110, 164, 216, 1101
LweI GCATC 2 cut(s) 802, 856
MaeI CTAG 6 cut(s) 84, 164, 329, 399, 459, 1173
MaeIII GTNAC 3 cut(s) 538, 691, 922
MalI GATC 3 cut(s) 22, 45, 797
MboI GATC 3 cut(s) 20, 43, 795
MfeI CAATTG 1 cut(s) 1184
MhlI GDGCHC 1 cut(s) 221
MluCI AATT 1 cut(s) 1184
MlyI GAGTC 3 cut(s) 89, 587, 728
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 9 cut(s) 232, 304, 487, 824, 906, 967, 1004, 1048, 1051
MroXI GAANNNNTTC 1 cut(s) 1084
MseI TTAA 4 cut(s) 32, 467, 759, 827
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 15
MunI CAATTG 1 cut(s) 1184
Mva1269I GAATGC 1 cut(s) 519
MvaI CCWGG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 192
NdeI CATATG 1 cut(s) 416
NdeII GATC 3 cut(s) 20, 43, 795
NlaIII CATG 6 cut(s) 196, 216, 281, 527, 796, 825
NlaIV GGNNCC 2 cut(s) 218, 315
NmuCI GTSAC 2 cut(s) 538, 922
NspI RCATGY 1 cut(s) 825
PciI ACATGT 1 cut(s) 821
PctI GAATGC 1 cut(s) 519
PdmI GAANNNNTTC 1 cut(s) 1084
PfeI GAWTC 4 cut(s) 169, 599, 605, 1014
PleI GAGTC 3 cut(s) 88, 587, 727
PpsI GAGTC 3 cut(s) 88, 587, 727
PscI ACATGT 1 cut(s) 821
Psp6I CCWGG 1 cut(s) 13
PspEI GGTNACC 1 cut(s) 691
PspFI CCCAGC 2 cut(s) 768, 951
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 218, 315
PspPI GGNCC 2 cut(s) 314, 954
PstI CTGCAG 4 cut(s) 158, 556, 577, 685
PvuII CAGCTG 1 cut(s) 809
RsaI GTAC 1 cut(s) 634
RsaNI GTAC 1 cut(s) 633
SaqAI TTAA 4 cut(s) 32, 467, 759, 827
Sau3AI GATC 3 cut(s) 20, 43, 795
Sau96I GGNCC 2 cut(s) 314, 954
SchI GAGTC 3 cut(s) 89, 587, 728
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 221
SfaNI GCATC 2 cut(s) 802, 856
SfcI CTRYAG 4 cut(s) 154, 552, 573, 681
SinI GGWCC 1 cut(s) 314
SmlI CTYRAG 1 cut(s) 897
SmoI CTYRAG 1 cut(s) 897
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 1 cut(s) 1184
SspMI CTAG 6 cut(s) 84, 164, 329, 399, 459, 1173
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 2 cut(s) 163, 192
TaaI ACNGT 3 cut(s) 61, 700, 1109
TaqI TCGA 3 cut(s) 309, 502, 741
TasI AATT 1 cut(s) 1184
TfiI GAWTC 4 cut(s) 169, 599, 605, 1014
Tru1I TTAA 4 cut(s) 32, 467, 759, 827
Tru9I TTAA 4 cut(s) 32, 467, 759, 827
TscAI CASTG 2 cut(s) 66, 1114
TseFI GTSAC 2 cut(s) 538, 922
Tsp45I GTSAC 2 cut(s) 538, 922
TspDTI ATGAA 3 cut(s) 294, 512, 1152
TspGWI ACGGA 4 cut(s) 123, 176, 487, 526
TspRI CASTG 2 cut(s) 66, 1114
VpaK11BI GGWCC 1 cut(s) 314
XceI RCATGY 1 cut(s) 825
XcmI CCANNNNNNNNNTGG 1 cut(s) 190
XmaJI CCTAGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 1084
XspI CTAG 6 cut(s) 84, 164, 329, 399, 459, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.