Auxin canalisation
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g33410 |
| malus_domestica | MD07G1304200.v1.1 MD10G1255700.v1.1 |
| prunus_persica | Prupe.2G322800_v2.0.a1 |
| pyrus_communis | pycom07g27720 pycom10g21160 |
| rosa_chinensis | RchiOBHm_Chr1g0383381 |
| rosa_laevigata | RLG00000026106 |
| rosa_roxburghii | Rroxscaffold_4G00277340 |
| rosa_rugosa | Rorug01G0441100 |
| rosa_samantha | Rh1AG467100 Rh1BG424400 Rh1DG457100 |
| rosa_wichuraiana | Rw1G040560 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 468 |
| AcuI | CTGAAG | 1 cut(s) | 537 |
| AfaI | GTAC | 3 cut(s) | 67, 442, 447 |
| AflIII | ACRYGT | 2 cut(s) | 72, 629 |
| AgsI | TTSAA | 6 cut(s) | 47, 317, 452, 777, 897, 940 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 800, 832 |
| Alw26I | GTCTC | 2 cut(s) | 134, 989 |
| AoxI | GGCC | 2 cut(s) | 669, 762 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 461, 493 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 892 |
| AspLEI | GCGC | 1 cut(s) | 541 |
| AspS9I | GGNCC | 2 cut(s) | 122, 762 |
| AvaII | GGWCC | 1 cut(s) | 122 |
| AxyI | CCTNAGG | 1 cut(s) | 905 |
| BanII | GRGCYC | 1 cut(s) | 29 |
| BccI | CCATC | 2 cut(s) | 67, 237 |
| BceAI | ACGGC | 1 cut(s) | 772 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 461, 495 |
| BciVI | GTATCC | 1 cut(s) | 914 |
| BclI | TGATCA | 1 cut(s) | 603 |
| BcoDI | GTCTC | 2 cut(s) | 134, 989 |
| BfaI | CTAG | 4 cut(s) | 137, 207, 267, 981 |
| BfmI | CTRYAG | 3 cut(s) | 360, 381, 486 |
| BfuI | GTATCC | 1 cut(s) | 914 |
| Bme18I | GGWCC | 1 cut(s) | 122 |
| BmgT120I | GGNCC | 2 cut(s) | 122, 762 |
| BmiI | GGNNCC | 2 cut(s) | 26, 123 |
| BmsI | GCATC | 2 cut(s) | 610, 664 |
| BpmI | CTGGAG | 1 cut(s) | 788 |
| Bpu10I | CCTNAGC | 1 cut(s) | 882 |
| BpuEI | CTTGAG | 1 cut(s) | 690 |
| Bsa29I | ATCGAT | 1 cut(s) | 549 |
| BsaJI | CCNNGG | 1 cut(s) | 666 |
| BsaWI | WCCGGW | 1 cut(s) | 169 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 901, 931 |
| Bse1I | ACTGG | 1 cut(s) | 598 |
| Bse21I | CCTNAGG | 1 cut(s) | 905 |
| BseCI | ATCGAT | 1 cut(s) | 549 |
| BseDI | CCNNGG | 1 cut(s) | 666 |
| BseGI | GGATG | 3 cut(s) | 106, 248, 310 |
| BseMII | CTCAG | 4 cut(s) | 417, 516, 585, 896 |
| BseNI | ACTGG | 1 cut(s) | 598 |
| BseRI | GAGGAG | 2 cut(s) | 654, 878 |
| BseYI | CCCAGC | 2 cut(s) | 576, 759 |
| BshFI | GGCC | 2 cut(s) | 671, 764 |
| BshVI | ATCGAT | 1 cut(s) | 549 |
| BsiSI | CCGG | 1 cut(s) | 170 |
| BslFI | GGGAC | 1 cut(s) | 135 |
| BsmAI | GTCTC | 2 cut(s) | 134, 989 |
| BsmFI | GGGAC | 1 cut(s) | 135 |
| BsmI | GAATGC | 1 cut(s) | 327 |
| BsnI | GGCC | 2 cut(s) | 671, 764 |
| Bsp1286I | GDGCHC | 1 cut(s) | 29 |
| Bsp143I | GATC | 1 cut(s) | 603 |
| BspANI | GGCC | 2 cut(s) | 671, 764 |
| BspCNI | CTCAG | 4 cut(s) | 416, 517, 584, 895 |
| BspDI | ATCGAT | 1 cut(s) | 549 |
| BspLI | GGNNCC | 2 cut(s) | 26, 123 |
| BspMAI | CTGCAG | 3 cut(s) | 364, 385, 490 |
| BsrI | ACTGG | 1 cut(s) | 598 |
| BssECI | CCNNGG | 1 cut(s) | 666 |
| BssMI | GATC | 1 cut(s) | 603 |
| BssT1I | CCWWGG | 1 cut(s) | 666 |
| Bst4CI | ACNGT | 4 cut(s) | 445, 508, 917, 993 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 377 |
| BstC8I | GCNNGC | 1 cut(s) | 325 |
| BstDEI | CTNAG | 7 cut(s) | 11, 403, 525, 571, 826, 882, 905 |
| BstEII | GGTNACC | 1 cut(s) | 499 |
| BstF5I | GGATG | 3 cut(s) | 106, 248, 310 |
| BstHHI | GCGC | 1 cut(s) | 541 |
| BstKTI | GATC | 1 cut(s) | 606 |
| BstMAI | GTCTC | 2 cut(s) | 134, 989 |
| BstMBI | GATC | 1 cut(s) | 603 |
| BstNSI | RCATGY | 2 cut(s) | 76, 633 |
| BstPI | GGTNACC | 1 cut(s) | 499 |
| BstSFI | CTRYAG | 3 cut(s) | 360, 381, 486 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 593 |
| Bsu15I | ATCGAT | 1 cut(s) | 549 |
| Bsu36I | CCTNAGG | 1 cut(s) | 905 |
| BsuI | GTATCC | 1 cut(s) | 914 |
| BsuRI | GGCC | 2 cut(s) | 671, 764 |
| BsuTUI | ATCGAT | 1 cut(s) | 549 |
| BtsCI | GGATG | 3 cut(s) | 106, 248, 310 |
| BtsIMutI | CAGTG | 1 cut(s) | 922 |
| Cac8I | GCNNGC | 1 cut(s) | 325 |
| CfoI | GCGC | 1 cut(s) | 541 |
| Cfr13I | GGNCC | 2 cut(s) | 122, 762 |
| ClaI | ATCGAT | 1 cut(s) | 549 |
| Csp6I | GTAC | 3 cut(s) | 66, 441, 446 |
| CviAII | CATG | 8 cut(s) | 21, 73, 86, 332, 397, 456, 601, 630 |
| CviQI | GTAC | 3 cut(s) | 66, 441, 446 |
| DdeI | CTNAG | 7 cut(s) | 11, 403, 525, 571, 826, 882, 905 |
| DpnI | GATC | 1 cut(s) | 605 |
| DpnII | GATC | 1 cut(s) | 603 |
| Eco130I | CCWWGG | 1 cut(s) | 666 |
| Eco24I | GRGCYC | 1 cut(s) | 29 |
| Eco47I | GGWCC | 1 cut(s) | 122 |
| Eco57I | CTGAAG | 1 cut(s) | 537 |
| Eco81I | CCTNAGG | 1 cut(s) | 905 |
| Eco91I | GGTNACC | 1 cut(s) | 499 |
| EcoO65I | GGTNACC | 1 cut(s) | 499 |
| EcoT14I | CCWWGG | 1 cut(s) | 666 |
| EcoT38I | GRGCYC | 1 cut(s) | 29 |
| ErhI | CCWWGG | 1 cut(s) | 666 |
| FaeI | CATG | 8 cut(s) | 24, 76, 89, 335, 400, 459, 604, 633 |
| FaqI | GGGAC | 1 cut(s) | 135 |
| FatI | CATG | 8 cut(s) | 20, 72, 85, 331, 396, 455, 600, 629 |
| FauNDI | CATATG | 1 cut(s) | 224 |
| FbaI | TGATCA | 1 cut(s) | 603 |
| FblI | GTMKAC | 1 cut(s) | 468 |
| FokI | GGATG | 3 cut(s) | 113, 255, 317 |
| FriOI | GRGCYC | 1 cut(s) | 29 |
| FspBI | CTAG | 4 cut(s) | 137, 207, 267, 981 |
| GlaI | GCGC | 1 cut(s) | 540 |
| GsaI | CCCAGC | 2 cut(s) | 580, 763 |
| GsuI | CTGGAG | 1 cut(s) | 788 |
| HaeIII | GGCC | 2 cut(s) | 671, 764 |
| HapII | CCGG | 1 cut(s) | 170 |
| HhaI | GCGC | 1 cut(s) | 541 |
| Hin1II | CATG | 8 cut(s) | 24, 76, 89, 335, 400, 459, 604, 633 |
| Hin6I | GCGC | 1 cut(s) | 539 |
| HinP1I | GCGC | 1 cut(s) | 539 |
| HinfI | GANTC | 6 cut(s) | 257, 401, 407, 413, 527, 822 |
| HpaII | CCGG | 1 cut(s) | 170 |
| Hpy166II | GTNNAC | 1 cut(s) | 469 |
| Hpy188I | TCNGA | 2 cut(s) | 406, 412 |
| Hpy188III | TCNNGA | 3 cut(s) | 741, 805, 964 |
| Hpy8I | GTNNAC | 1 cut(s) | 469 |
| HpyAV | CCTTC | 2 cut(s) | 90, 747 |
| HpyCH4III | ACNGT | 4 cut(s) | 445, 508, 917, 993 |
| HpyCH4IV | ACGT | 1 cut(s) | 465 |
| HpyCH4V | TGCA | 6 cut(s) | 362, 383, 488, 626, 647, 997 |
| HpyF3I | CTNAG | 7 cut(s) | 11, 403, 525, 571, 826, 882, 905 |
| HpySE526I | ACGT | 1 cut(s) | 465 |
| Hsp92II | CATG | 8 cut(s) | 24, 76, 89, 335, 400, 459, 604, 633 |
| HspAI | GCGC | 1 cut(s) | 539 |
| Ksp22I | TGATCA | 1 cut(s) | 603 |
| Kzo9I | GATC | 1 cut(s) | 603 |
| LmnI | GCTCC | 2 cut(s) | 24, 909 |
| LweI | GCATC | 2 cut(s) | 610, 664 |
| MaeI | CTAG | 4 cut(s) | 137, 207, 267, 981 |
| MaeII | ACGT | 1 cut(s) | 465 |
| MaeIII | GTNAC | 3 cut(s) | 346, 499, 730 |
| MalI | GATC | 1 cut(s) | 605 |
| MboI | GATC | 1 cut(s) | 603 |
| MboII | GAAGA | 5 cut(s) | 101, 140, 307, 549, 820 |
| MhlI | GDGCHC | 1 cut(s) | 29 |
| MlyI | GAGTC | 2 cut(s) | 395, 536 |
| MmeI | TCCRAC | 1 cut(s) | 78 |
| MnlI | CCTC | 9 cut(s) | 40, 112, 295, 632, 714, 775, 812, 856, 859 |
| MroXI | GAANNNNTTC | 1 cut(s) | 892 |
| MseI | TTAA | 3 cut(s) | 275, 567, 635 |
| MspA1I | CMGCKG | 1 cut(s) | 617 |
| MspI | CCGG | 1 cut(s) | 170 |
| Mva1269I | GAATGC | 1 cut(s) | 327 |
| NdeI | CATATG | 1 cut(s) | 224 |
| NdeII | GATC | 1 cut(s) | 603 |
| NlaIII | CATG | 8 cut(s) | 24, 76, 89, 335, 400, 459, 604, 633 |
| NlaIV | GGNNCC | 2 cut(s) | 26, 123 |
| NmuCI | GTSAC | 2 cut(s) | 346, 730 |
| NspI | RCATGY | 2 cut(s) | 76, 633 |
| PciI | ACATGT | 2 cut(s) | 72, 629 |
| PctI | GAATGC | 1 cut(s) | 327 |
| PdmI | GAANNNNTTC | 1 cut(s) | 892 |
| PfeI | GAWTC | 4 cut(s) | 257, 407, 413, 822 |
| PleI | GAGTC | 2 cut(s) | 395, 535 |
| PpsI | GAGTC | 2 cut(s) | 395, 535 |
| PscI | ACATGT | 2 cut(s) | 72, 629 |
| PspEI | GGTNACC | 1 cut(s) | 499 |
| PspFI | CCCAGC | 2 cut(s) | 576, 759 |
| PspN4I | GGNNCC | 2 cut(s) | 26, 123 |
| PspPI | GGNCC | 2 cut(s) | 122, 762 |
| PstI | CTGCAG | 3 cut(s) | 364, 385, 490 |
| PvuII | CAGCTG | 1 cut(s) | 617 |
| RsaI | GTAC | 3 cut(s) | 67, 442, 447 |
| RsaNI | GTAC | 3 cut(s) | 66, 441, 446 |
| SaqAI | TTAA | 3 cut(s) | 275, 567, 635 |
| Sau3AI | GATC | 1 cut(s) | 603 |
| Sau96I | GGNCC | 2 cut(s) | 122, 762 |
| SchI | GAGTC | 2 cut(s) | 395, 536 |
| SduI | GDGCHC | 1 cut(s) | 29 |
| SfaNI | GCATC | 2 cut(s) | 610, 664 |
| SfcI | CTRYAG | 3 cut(s) | 360, 381, 486 |
| SinI | GGWCC | 1 cut(s) | 122 |
| SmlI | CTYRAG | 1 cut(s) | 705 |
| SmoI | CTYRAG | 1 cut(s) | 705 |
| SspMI | CTAG | 4 cut(s) | 137, 207, 267, 981 |
| StyI | CCWWGG | 1 cut(s) | 666 |
| TaaI | ACNGT | 4 cut(s) | 445, 508, 917, 993 |
| TaiI | ACGT | 1 cut(s) | 468 |
| TaqI | TCGA | 3 cut(s) | 117, 310, 549 |
| TfiI | GAWTC | 4 cut(s) | 257, 407, 413, 822 |
| Tru1I | TTAA | 3 cut(s) | 275, 567, 635 |
| Tru9I | TTAA | 3 cut(s) | 275, 567, 635 |
| TscAI | CASTG | 1 cut(s) | 922 |
| TseFI | GTSAC | 2 cut(s) | 346, 730 |
| Tsp45I | GTSAC | 2 cut(s) | 346, 730 |
| TspDTI | ATGAA | 3 cut(s) | 102, 320, 960 |
| TspGWI | ACGGA | 2 cut(s) | 295, 334 |
| TspRI | CASTG | 1 cut(s) | 922 |
| VpaK11BI | GGWCC | 1 cut(s) | 122 |
| XceI | RCATGY | 2 cut(s) | 76, 633 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 394 |
| XmiI | GTMKAC | 1 cut(s) | 468 |
| XmnI | GAANNNNTTC | 1 cut(s) | 892 |
| XspI | CTAG | 4 cut(s) | 137, 207, 267, 981 |