Prupe.2G322800_v2.0.a1

Auxin canalisation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016928
Physical Location & Seq
Forward (+)
29941158 .. 29941991
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G322800.1

Sequence Viewer

Length: 423 bp
ATGAACTCCAAGCACACAAAGGGATGGTTAGGAGGCAAATCCTTAATAAGCATATTCGGACTGCAGAGAGTGAAGAAGAAAGATGATATTCGACTTCACACAGCAAGCGTTCATGCAGCCCTTTCTGTCACACGCTTGGCTGCAGCTATTGCCAGCGTTGCTTCCAACTGCAAGAACAGCAGCATAGAATCAGCGGAAGACGTCGACCCCATTACAGGTGACATCGTTGCTTCTGCCGCAGCTCTGGTTACCACGGTATGTGCTGAAGCCGCAGAGTCATTGGGTGCACAGAAAACAAATGTTTCTTCTGCCATCAACTCCGGCTTGGCTATCCAAACAACCGACGACATGATCACACTTACAGCTGCTGCTGCAACATGTAATGTTTTGATCAATGTTTCCTTCACCATAATCTTCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_canalis PH_2

Protein Analysis

141

Amino Acids

14.43

Weight (kDa)

7.75

Isoelectric Point (pI)

17.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016928)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33410
malus_domestica MD07G1304200.v1.1 MD10G1255700.v1.1
prunus_persica Prupe.2G322800_v2.0.a1
pyrus_communis pycom07g27720 pycom10g21160
rosa_chinensis RchiOBHm_Chr1g0383381
rosa_laevigata RLG00000026106
rosa_roxburghii Rroxscaffold_4G00277340
rosa_rugosa Rorug01G0441100
rosa_samantha Rh1AG467100 Rh1BG424400 Rh1DG457100
rosa_wichuraiana Rw1G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccI GTMKAC 1 cut(s) 204
AciI CCGC 3 cut(s) 194, 237, 270
AcuI CTGAAG 2 cut(s) 285, 400
AcyI GRCGYC 1 cut(s) 201
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 377
AluBI AGCT 3 cut(s) 146, 242, 365
AluI AGCT 3 cut(s) 146, 242, 365
Alw21I GWGCWC 1 cut(s) 289
Alw44I GTGCAC 1 cut(s) 285
AlwNI CAGNNNCTG 1 cut(s) 368
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 8 cut(s) 116, 140, 143, 180, 239, 365, 368, 371
AsuHPI GGTGA 2 cut(s) 230, 397
BaeGI GKGCMC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 8 cut(s) 127, 128, 155, 192, 251, 352, 355, 358
BccI CCATC 2 cut(s) 18, 320
BclI TGATCA 2 cut(s) 351, 390
BfmI CTRYAG 2 cut(s) 62, 141
BpiI GAAGAC 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 8 cut(s) 127, 128, 155, 192, 251, 352, 355, 358
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 2 cut(s) 351, 390
BspACI CCGC 3 cut(s) 194, 237, 270
BspMAI CTGCAG 2 cut(s) 66, 145
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 2 cut(s) 351, 390
BssNI GRCGYC 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 256
BstACI GRCGYC 1 cut(s) 201
BstAPI GCANNNNNTGC 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 106, 154
BstDSI CCRYGG 1 cut(s) 252
BstEII GGTNACC 1 cut(s) 247
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 2 cut(s) 354, 393
BstMBI GATC 2 cut(s) 351, 390
BstMWI GCNNNNNNNGC 6 cut(s) 149, 158, 177, 236, 269, 371
BstNSI RCATGY 1 cut(s) 381
BstPI GGTNACC 1 cut(s) 247
BstSFI CTRYAG 2 cut(s) 62, 141
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 8 cut(s) 127, 128, 155, 192, 251, 352, 355, 358
BstV2I GAAGAC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 29
Cac8I GCNNGC 2 cut(s) 106, 154
CaiI CAGNNNCTG 1 cut(s) 368
CviAII CATG 3 cut(s) 113, 349, 378
CviJI RGCY 8 cut(s) 119, 140, 146, 242, 269, 324, 329, 365
CviKI_1 RGCY 8 cut(s) 119, 140, 146, 242, 269, 324, 329, 365
DpnI GATC 2 cut(s) 353, 392
DpnII GATC 2 cut(s) 351, 390
Eco57I CTGAAG 2 cut(s) 285, 400
Eco91I GGTNACC 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 247
FaeI CATG 3 cut(s) 116, 352, 381
FaiI YATR 7 cut(s) 53, 114, 185, 259, 350, 379, 410
FatI CATG 3 cut(s) 112, 348, 377
FbaI TGATCA 2 cut(s) 351, 390
FblI GTMKAC 1 cut(s) 204
FokI GGATG 1 cut(s) 36
HapII CCGG 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 3 cut(s) 116, 352, 381
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 2 cut(s) 188, 275
HpaII CCGG 1 cut(s) 321
HphI GGTGA 2 cut(s) 230, 397
Hpy166II GTNNAC 2 cut(s) 205, 287
Hpy188I TCNGA 2 cut(s) 59, 419
Hpy8I GTNNAC 2 cut(s) 205, 287
Hpy99I CGWCG 2 cut(s) 206, 347
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 6 cut(s) 64, 116, 143, 171, 287, 374
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 158, 177, 236, 269, 371
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 3 cut(s) 116, 352, 381
Ksp22I TGATCA 2 cut(s) 351, 390
Kzo9I GATC 2 cut(s) 351, 390
LpnPI CCDG 4 cut(s) 166, 201, 230, 334
Lsp1109I GCAGC 8 cut(s) 127, 128, 155, 192, 251, 352, 355, 358
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 3 cut(s) 127, 218, 247
MalI GATC 2 cut(s) 353, 392
MboI GATC 2 cut(s) 351, 390
MboII GAAGA 5 cut(s) 85, 88, 209, 297, 406
MhlI GDGCHC 1 cut(s) 289
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 1 cut(s) 26
MseI TTAA 1 cut(s) 44
MspA1I CMGCKG 2 cut(s) 194, 365
MspI CCGG 1 cut(s) 321
MwoI GCNNNNNNNGC 6 cut(s) 149, 158, 177, 236, 269, 371
NdeII GATC 2 cut(s) 351, 390
NlaIII CATG 3 cut(s) 116, 352, 381
NmuCI GTSAC 2 cut(s) 127, 218
NspI RCATGY 1 cut(s) 381
PciI ACATGT 1 cut(s) 377
PfeI GAWTC 1 cut(s) 188
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PscI ACATGT 1 cut(s) 377
PspEI GGTNACC 1 cut(s) 247
PstI CTGCAG 2 cut(s) 66, 145
PstNI CAGNNNCTG 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 365
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 44
Sau3AI GATC 2 cut(s) 351, 390
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 1 cut(s) 289
SetI ASST 5 cut(s) 148, 204, 220, 244, 367
SfcI CTRYAG 2 cut(s) 62, 141
SsiI CCGC 3 cut(s) 194, 237, 270
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 91, 204
TauI GCSGC 2 cut(s) 239, 272
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TseFI GTSAC 2 cut(s) 127, 218
TseI GCWGC 8 cut(s) 116, 140, 143, 180, 239, 365, 368, 371
Tsp45I GTSAC 2 cut(s) 127, 218
TspDTI ATGAA 2 cut(s) 17, 101
VneI GTGCAC 1 cut(s) 285
XceI RCATGY 1 cut(s) 381
XmiI GTMKAC 1 cut(s) 204
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.