FvH4_c1g00620

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
contig_1
OG0011600
Physical Location & Seq
Forward (+)
152184 .. 152604
421 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_c1g00620.t1

Sequence Viewer

Length: 318 bp
ATGCTCAGGATGGCAATCGTGGTGAATGCTACAGTCGCCTGCAGGCTTGAGATTGAAAGGGGGATTCCTTTTCGGCTGGAAATGAAAATGAAGATTGTGGAATCTGAAGGCACTGGTTCTCCGAATCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACACATATTTTGCGGAAATTGCTCCTGAGCCTTACCTGAGCTTACAAAAGTTCATTGCTATGATTGAAATACTGCCTTATTATGCTCGTGTCATCGATGATGGGCTTTACAGGGCGGGCGGTTGGTATATATTTGAAGGTTCATTCATTGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

106

Amino Acids

11.86

Weight (kDa)

5.79

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 35 - 96 1.3e-16 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 173, 275, 279
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 128
AgsI TTSAA 4 cut(s) 56, 142, 227, 296
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AsuHPI GGTGA 1 cut(s) 34
BauI CACGAG 1 cut(s) 246
BccI CCATC 2 cut(s) 4, 254
BceAI ACGGC 1 cut(s) 167
BfmI CTRYAG 2 cut(s) 30, 40
Bpu10I CCTNAGC 3 cut(s) 5, 186, 197
BpuEI CTTGAG 1 cut(s) 68
Bsa29I ATCGAT 1 cut(s) 255
BsaBI GATNNNNATC 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 103, 133
Bsc4I CCNNNNNNNGG 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 2 cut(s) 213, 306
Bse8I GATNNNNATC 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 255
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMI GCAATG 2 cut(s) 213, 306
BseMII CTCAG 3 cut(s) 19, 177, 188
BseNI ACTGG 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 128
BsmI GAATGC 1 cut(s) 31
BspACI CCGC 3 cut(s) 173, 275, 279
BspCNI CTCAG 3 cut(s) 18, 178, 189
BspDI ATCGAT 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 44
BsrDI GCAATG 2 cut(s) 213, 306
BsrI ACTGG 1 cut(s) 118
BssSI CACGAG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 3 cut(s) 40, 44, 277
BstDEI CTNAG 3 cut(s) 5, 186, 197
BstF5I GGATG 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 35, 179
BstSFI CTRYAG 2 cut(s) 30, 40
Bsu15I ATCGAT 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 3 cut(s) 40, 44, 277
ClaI ATCGAT 1 cut(s) 255
CviAII CATG 1 cut(s) 128
CviJI RGCY 6 cut(s) 46, 76, 154, 190, 201, 265
CviKI_1 RGCY 6 cut(s) 46, 76, 154, 190, 201, 265
DdeI CTNAG 3 cut(s) 5, 186, 197
Eco57I CTGAAG 1 cut(s) 126
FaeI CATG 1 cut(s) 131
FaiI YATR 6 cut(s) 129, 166, 221, 243, 288, 290
FatI CATG 1 cut(s) 127
FauI CCCGC 1 cut(s) 268
FokI GGATG 1 cut(s) 22
Hin1II CATG 1 cut(s) 131
HinfI GANTC 3 cut(s) 64, 101, 124
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 106, 123
Hpy188III TCNNGA 2 cut(s) 7, 185
HpyAV CCTTC 2 cut(s) 101, 290
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 179
HpyF3I CTNAG 3 cut(s) 5, 186, 197
Hsp92II CATG 1 cut(s) 131
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 28, 52, 62, 99, 198, 209, 256
MboII GAAGA 1 cut(s) 103
MluCI AATT 1 cut(s) 177
MmeI TCCRAC 1 cut(s) 127
MslI CAYNNNNRTG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 35, 179
NlaIII CATG 1 cut(s) 131
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 3 cut(s) 64, 101, 124
PstI CTGCAG 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 218
SbfI CCTGCAGG 1 cut(s) 44
SdaI CCTGCAGG 1 cut(s) 44
SetI ASST 3 cut(s) 198, 203, 301
SfcI CTRYAG 2 cut(s) 30, 40
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 47
SmoI CTYRAG 1 cut(s) 47
Sse8387I CCTGCAGG 1 cut(s) 44
Sse9I AATT 1 cut(s) 177
SsiI CCGC 3 cut(s) 173, 275, 279
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 255
TasI AATT 1 cut(s) 177
TfiI GAWTC 3 cut(s) 64, 101, 124
TscAI CASTG 1 cut(s) 118
TspDTI ATGAA 6 cut(s) 98, 104, 123, 202, 291, 295
TspRI CASTG 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.