Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011600

Physical Location & Seq

Genomic Coordinates Forward (+)

2575963 .. 2577245

Gene Structure 1283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG017900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGAGTGAGGCTGAGTGAGTTGGAGAAGGAACAGTTGTTTATGAAACAAGGAATGATGGATAAAACAGGAAATGGCAAGACTTTCTTGACCGCAATCTCTAAGGGGATTGTAAGGATTGTAATTTTGAGTGGTCAAGCAGGAGGTTGCGAAGCAAAGGCACTGAACGAAGTGAAGTGGGAAGAAAGAGAGAGACTCTTTACGAAAGAACGCGCAGACGCGGTCTTGTCCACCAGAGCATCGATGAACGAAGCGGTCTCACCGCCAGGGGAGGGACTAGAACCTTCAGCAGTCTCTGCTCCTGTGGTCGGAACCGGACTTACTAACCTTGCTAACCGAGCCCCAATTCTTCAATACCAGCAGGCAGACGGCCACGAAGGTAAATTGATAATAGATATGATCCGTGTGATGTATCCCCCCGCCAGGGCCGAAGAGGGGCGTTTTAAAGGGTTTTCTGAGTTAGCCCTTATGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

158

Amino Acids

17.29

Weight (kDa)

7.84

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011600)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_c1g00620
rosa_chinensis	RchiOBHm_Chr6g0251061 RchiOBHm_Chr6g0251071 RchiOBHm_MTg0498911 RchiOBHm_MTg0498921
rosa_laevigata	RLG00000000139 RLG00000000140 RLG00000000156 RLG00000000414 RLG00000000487
rosa_multiflora	Rmu_co8337121.1_g000001 Rmu_sc0001501.1_g000034
rosa_roxburghii	Rroxscaffold_2G00119520 Rroxscaffold_6G00392880
rosa_rugosa	Rorug05G0446900
rosa_samantha	Rh1BG017800 Rh1BG017900 Rh1BG020000 Rh1BG020100 Rh5CG062500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	213, 221
AciI	CCGC	5 cut(s)	93, 221, 254, 263, 420
AclWI	GGATC	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	270
AfiI	CCNNNNNNNGG	5 cut(s)	272, 308, 423, 424, 435
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	2 cut(s)	265, 422
Alw26I	GTCTC	3 cut(s)	187, 262, 298
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	2 cut(s)	370, 426
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	343
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	2 cut(s)	267, 424
BciVI	GTATCC	1 cut(s)	423
BcoDI	GTCTC	3 cut(s)	187, 262, 298
BfaI	CTAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	423
Bme1390I	CCNGG	2 cut(s)	267, 424
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	2 cut(s)	267, 424
BmsI	GCATC	1 cut(s)	248
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
Bsa29I	ATCGAT	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	266, 423
BsaWI	WCCGGW	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 308, 423, 424, 435
BseBI	CCWGG	2 cut(s)	267, 424
BseCI	ATCGAT	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	266, 423
BseLI	CCNNNNNNNGG	5 cut(s)	272, 308, 423, 424, 435
BseMII	CTCAG	2 cut(s)	5, 447
Bsh1236I	CGCG	2 cut(s)	213, 221
BshFI	GGCC	2 cut(s)	372, 428
BshVI	ATCGAT	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	5 cut(s)	272, 308, 423, 424, 435
BsmAI	GTCTC	3 cut(s)	187, 262, 298
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	2 cut(s)	372, 428
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	399, 471
BspACI	CCGC	5 cut(s)	93, 221, 254, 263, 420
BspANI	GGCC	2 cut(s)	372, 428
BspCNI	CTCAG	2 cut(s)	6, 448
BspDI	ATCGAT	1 cut(s)	242
BspFNI	CGCG	2 cut(s)	213, 221
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	266, 423
BssMI	GATC	2 cut(s)	399, 471
Bst2UI	CCWGG	2 cut(s)	267, 424
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	426
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	14, 102, 456
BstFNI	CGCG	2 cut(s)	213, 221
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	2 cut(s)	402, 474
BstMAI	GTCTC	3 cut(s)	187, 262, 298
BstMBI	GATC	2 cut(s)	399, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 338
BstNI	CCWGG	2 cut(s)	267, 424
BstSCI	CCNGG	2 cut(s)	265, 422
BstUI	CGCG	2 cut(s)	213, 221
Bsu15I	ATCGAT	1 cut(s)	242
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	372, 428
BsuTUI	ATCGAT	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	426
ClaI	ATCGAT	1 cut(s)	242
CseI	GACGC	1 cut(s)	227
CviJI	RGCY	5 cut(s)	13, 341, 372, 428, 464
CviKI_1	RGCY	5 cut(s)	13, 341, 372, 428, 464
DdeI	CTNAG	3 cut(s)	14, 102, 456
DpnI	GATC	2 cut(s)	401, 473
DpnII	GATC	2 cut(s)	399, 471
DraI	TTTAAA	1 cut(s)	445
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	265, 422
EcoT38I	GRGCYC	1 cut(s)	343
FaiI	YATR	3 cut(s)	44, 398, 470
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	288
FauI	CCCGC	1 cut(s)	427
FriOI	GRGCYC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	214
HaeIII	GGCC	2 cut(s)	372, 428
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	215
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	252
Hpy166II	GTNNAC	1 cut(s)	231
Hpy188I	TCNGA	2 cut(s)	311, 457
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	231
HpyAV	CCTTC	3 cut(s)	22, 294, 371
HpyCH4III	ACNGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 338
HpyF3I	CTNAG	3 cut(s)	14, 102, 456
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	399, 471
LmnI	GCTCC	1 cut(s)	304
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	278
MalI	GATC	2 cut(s)	401, 473
MboI	GATC	2 cut(s)	399, 471
MboII	GAAGA	3 cut(s)	194, 341, 443
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	3 cut(s)	123, 345, 383
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	4 cut(s)	3, 137, 265, 427
MseI	TTAA	1 cut(s)	444
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	267, 424
MvaI	CCWGG	2 cut(s)	267, 424
MvnI	CGCG	2 cut(s)	213, 221
MwoI	GCNNNNNNNGC	2 cut(s)	296, 338
NdeII	GATC	2 cut(s)	399, 471
NlaIV	GGNNCC	1 cut(s)	313
PflFI	GACNNNGTC	1 cut(s)	221
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	2 cut(s)	265, 422
PspGI	CCWGG	2 cut(s)	265, 422
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	426
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PstNI	CAGNNNCTG	1 cut(s)	296
PsyI	GACNNNGTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	444
Sau3AI	GATC	2 cut(s)	399, 471
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	2 cut(s)	267, 424
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	4 cut(s)	148, 286, 330, 382
SfaNI	GCATC	1 cut(s)	248
Sse9I	AATT	3 cut(s)	123, 345, 383
SsiI	CCGC	5 cut(s)	93, 221, 254, 263, 420
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	2 cut(s)	265, 422
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	123, 345, 383
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	59, 260
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	1 cut(s)	168
Tth111I	GACNNNGTC	1 cut(s)	221
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.