Rh5CG062500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
4702031 .. 4702345
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG062500.1

Sequence Viewer

Length: 315 bp
ATGCTCATATCATCGACGATGGGCTTTACGGGGCGGGCAATTGGTATATCTTTGAAGGTGCATTCATTGCATTCATTGCTAACTAAAAAAGAATGTAAGAATCTCAGCAAATTCATAGATTGCCAAAAACAAAACAAAAAAAAGTTAGAAAGTAAAAAAACCACAGCAACGGTCACAGATACACCGACCACGGGGTTTTACGTAATTTCTGGGCTTTTATATTATTCTGACAGTCACGGTCTTCTCAGGTTCTCAGAAAAAAAAAAAAAAAAGAAGAAGGAAGGAAGCTCTCTCTCTCTCTCTCCCACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.53

Weight (kDa)

9.97

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 34
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 55
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
ApoI RAATTY 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 233
BccI CCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse3DI GCAATG 2 cut(s) 65, 74
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 2 cut(s) 65, 74
BseMII CTCAG 3 cut(s) 118, 259, 267
BslI CCNNNNNNNGG 1 cut(s) 191
BsmI GAATGC 2 cut(s) 61, 70
BspACI CCGC 1 cut(s) 34
BspCNI CTCAG 3 cut(s) 117, 258, 266
BsrDI GCAATG 2 cut(s) 65, 74
BssECI CCNNGG 1 cut(s) 189
Bst4CI ACNGT 4 cut(s) 172, 233, 239, 310
BstAPI GCANNNNNTGC 2 cut(s) 67, 76
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 104, 245, 253
BstDSI CCRYGG 1 cut(s) 189
BstMWI GCNNNNNNNGC 2 cut(s) 67, 76
BstSNI TACGTA 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 36
CviJI RGCY 3 cut(s) 24, 214, 288
CviKI_1 RGCY 3 cut(s) 24, 214, 288
DdeI CTNAG 3 cut(s) 104, 245, 253
Eco105I TACGTA 1 cut(s) 202
FaiI YATR 4 cut(s) 8, 47, 116, 220
FauI CCCGC 1 cut(s) 27
HinfI GANTC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 229, 256
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 49, 271, 275
HpyCH4III ACNGT 4 cut(s) 172, 233, 239, 310
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 2 cut(s) 61, 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 76
HpyF3I CTNAG 3 cut(s) 104, 245, 253
HpySE526I ACGT 1 cut(s) 201
LpnPI CCDG 2 cut(s) 195, 232
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 172, 233
MboII GAAGA 2 cut(s) 233, 286
MfeI CAATTG 1 cut(s) 39
MluCI AATT 3 cut(s) 39, 110, 204
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 2 cut(s) 61, 70
MwoI GCNNNNNNNGC 2 cut(s) 67, 76
NmuCI GTSAC 2 cut(s) 172, 233
PctI GAATGC 2 cut(s) 61, 70
PfeI GAWTC 1 cut(s) 100
Ppu21I YACGTR 1 cut(s) 202
SetI ASST 4 cut(s) 60, 204, 251, 290
SgeI CNNG 7 cut(s) 42, 47, 202, 204, 222, 248, 259
SnaBI TACGTA 1 cut(s) 202
Sse9I AATT 3 cut(s) 39, 110, 204
SsiI CCGC 1 cut(s) 34
TaaI ACNGT 4 cut(s) 172, 233, 239, 310
TaiI ACGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 14
TasI AATT 3 cut(s) 39, 110, 204
TfiI GAWTC 1 cut(s) 100
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 172, 233
Tsp45I GTSAC 2 cut(s) 172, 233
TspDTI ATGAA 3 cut(s) 54, 63, 103
TspRI CASTG 1 cut(s) 313
XapI RAATTY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.