RCHIOBHM_MTG0498921

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
Physical Location & Seq
Forward (+)
201718 .. 201966
249 bp
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UTR
Exon/CDS
Intron
PRQ15647

Sequence Viewer

Length: 249 bp
ATGAGAGTGAGGCTGAGTGAGTTGGAGAAGGAACAGTTGTTTATGAAACAAGGAATGATGGATAAAACAGGAAATGGCAAGACTTTCTTGACCGCAATCTCTAAGGGGATTGTAAGGATTGTAATTTTGAGTGGTCAAGCAGGAGGTTGCGAAGCAAAGGCACTGAACGAAGTGAAGTGGGAAGAAAGAGAGAGACTCTTTACGAAAGAAGTCCGTTTTACTGAGGGTTTCACTCATAAGACCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.41

Weight (kDa)

9.51

Isoelectric Point (pI)

21.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 187
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BseMII CTCAG 2 cut(s) 5, 213
BsmAI GTCTC 1 cut(s) 187
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 6, 214
Bst4CI ACNGT 1 cut(s) 36
BstDEI CTNAG 3 cut(s) 14, 102, 222
BstMAI GTCTC 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 161
CviJI RGCY 1 cut(s) 13
CviKI_1 RGCY 1 cut(s) 13
DdeI CTNAG 3 cut(s) 14, 102, 222
FaiI YATR 2 cut(s) 44, 237
FalI AAGNNNNNCTT 2 cut(s) 71, 103
HinfI GANTC 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 36
HpyF3I CTNAG 3 cut(s) 14, 102, 222
LpnPI CCDG 2 cut(s) 54, 126
MboII GAAGA 1 cut(s) 194
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 3 cut(s) 3, 137, 217
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
SchI GAGTC 1 cut(s) 189
SetI ASST 2 cut(s) 148, 245
SgeI CNNG 6 cut(s) 62, 81, 91, 100, 149, 153
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 93
TaaI ACNGT 1 cut(s) 36
TasI AATT 1 cut(s) 123
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.