Rmu_co8337121.1_g000001

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8337121.1
Physical Location & Seq
Reverse (-)
1 .. 819
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8337121.1_g000001.1.cds

Sequence Viewer

Length: 307 bp
atgccaacggagaaaagttgttcggtgccacagaggtttgggatgctcaggatggcaatcgtggtggatgctacagtcgcctgcaggcttgagattgaaaggaggattccttttcggctggaaatggtttcacttgacgatctccttataccatcaatccaagctggcggttcattatatgatgttgatactgttcatcgaataccgaaaatgctcctgagccttacccgagaaaagttcattgctatgattgaaatcctgccttattatgctcgtgtcatcgatgatgggctttacagggcgggcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.6

Weight (kDa)

6.56

Isoelectric Point (pI)

58.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 2 cut(s) 168, 302
AgsI TTSAA 2 cut(s) 98, 254
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 228
AvaI CYCGRG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 273
BccI CCATC 3 cut(s) 46, 160, 281
BfmI CTRYAG 2 cut(s) 72, 82
BmeT110I CYCGRG 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 2 cut(s) 33, 58
Bpu10I CCTNAGC 2 cut(s) 47, 218
BpuEI CTTGAG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 282
BsaBI GATNNNNATC 2 cut(s) 56, 254
Bse3DI GCAATG 1 cut(s) 240
Bse8I GATNNNNATC 2 cut(s) 56, 254
BseCI ATCGAT 1 cut(s) 282
BseGI GGATG 3 cut(s) 48, 57, 73
BseJI GATNNNNATC 2 cut(s) 56, 254
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 61, 209
BshNI GGYRCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 228
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 2 cut(s) 168, 302
BspCNI CTCAG 2 cut(s) 60, 210
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 240
BssMI GATC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 76, 193
BstC8I GCNNGC 4 cut(s) 82, 86, 166, 304
BstDEI CTNAG 2 cut(s) 47, 218
BstF5I GGATG 3 cut(s) 48, 57, 73
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSFI CTRYAG 2 cut(s) 72, 82
Bsu15I ATCGAT 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 3 cut(s) 48, 57, 73
Cac8I GCNNGC 4 cut(s) 82, 86, 166, 304
ClaI ATCGAT 1 cut(s) 282
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviJI RGCY 5 cut(s) 88, 118, 164, 222, 292
CviKI_1 RGCY 5 cut(s) 88, 118, 164, 222, 292
DdeI CTNAG 2 cut(s) 47, 218
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 228
FaiI YATR 5 cut(s) 149, 178, 180, 248, 270
FauI CCCGC 1 cut(s) 295
FokI GGATG 3 cut(s) 55, 64, 80
HinfI GANTC 1 cut(s) 106
Hpy188III TCNNGA 2 cut(s) 49, 217
HpyCH4III ACNGT 2 cut(s) 76, 193
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 47, 218
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 8 cut(s) 34, 70, 94, 104, 150, 230, 272, 283
LweI GCATC 2 cut(s) 33, 58
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MnlI CCTC 2 cut(s) 27, 96
MslI CAYNNNNRTG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 245
Sau3AI GATC 1 cut(s) 139
SbfI CCTGCAGG 1 cut(s) 86
SdaI CCTGCAGG 1 cut(s) 86
SetI ASST 2 cut(s) 38, 166
SfaNI GCATC 2 cut(s) 33, 58
SfcI CTRYAG 2 cut(s) 72, 82
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse8387I CCTGCAGG 1 cut(s) 86
SsiI CCGC 2 cut(s) 168, 302
TaaI ACNGT 2 cut(s) 76, 193
TaqI TCGA 2 cut(s) 199, 282
TfiI GAWTC 1 cut(s) 106
TspDTI ATGAA 3 cut(s) 162, 185, 229
TspGWI ACGGA 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.