Rh1BG017800

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011600
Physical Location & Seq
Forward (+)
2575305 .. 2575691
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG017800.1

Sequence Viewer

Length: 387 bp
ATGCTACAGTCGCCTGCAGGCTTGAGATTGAAAGGAGGATTCCTTTTCGGCTGGAAATGGTTTCACTTGACGATCTCCTTATACCATCAATCCAAGCTGGCGGTTCATTATATGATGTTGATACTGTTCATCGAATACCGGTCAATTTTCTGCAGCGAGAAGAAAATGAAGATTGTGGAATCTGAAGGCACTGGTTCTCCGAGTCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACACATATTTAGCTGAAATTGCTCCTGAGCCTTACCCGAGCTTACAAAAGTTCATTGCTATGATTGAAATCCTGCCTTATTATGCTCGTGTCATCGATAATGGGCTTTACAGGGCGGGCGGTATATATTTGAAGGTTCATTCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

9.35

Isoelectric Point (pI)

63.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 53 - 127 4.7e-19 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 101, 353, 357
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 206
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 4 cut(s) 31, 220, 305, 370
AluBI AGCT 3 cut(s) 97, 251, 279
AluI AGCT 3 cut(s) 97, 251, 279
Ama87I CYCGRG 1 cut(s) 274
ApeKI GCWGC 1 cut(s) 153
AsiGI ACCGGT 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 274
BauI CACGAG 1 cut(s) 324
BbvI GCAGC 1 cut(s) 165
BccI CCATC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 245
BfmI CTRYAG 3 cut(s) 5, 15, 151
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmeT110I CYCGRG 1 cut(s) 274
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 333
BseJI GATNNNNATC 1 cut(s) 305
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 165
BshTI ACCGGT 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 274
Bsp143I GATC 1 cut(s) 72
BspACI CCGC 3 cut(s) 101, 353, 357
BspCNI CTCAG 1 cut(s) 256
BspDI ATCGAT 1 cut(s) 333
BspMAI CTGCAG 2 cut(s) 19, 155
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 138
BssMI GATC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 324
Bst2BI CACGAG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 9, 126
BstC8I GCNNGC 4 cut(s) 15, 19, 99, 355
BstDEI CTNAG 1 cut(s) 264
BstKTI GATC 1 cut(s) 75
BstMBI GATC 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 10, 257
BstSFI CTRYAG 3 cut(s) 5, 15, 151
BstV1I GCAGC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 333
BsuTUI ATCGAT 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 4 cut(s) 15, 19, 99, 355
Cfr10I RCCGGY 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 333
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 1 cut(s) 206
CviJI RGCY 8 cut(s) 21, 51, 97, 232, 251, 268, 279, 343
CviKI_1 RGCY 8 cut(s) 21, 51, 97, 232, 251, 268, 279, 343
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 74
DpnII GATC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 274
FaeI CATG 1 cut(s) 209
FaiI YATR 9 cut(s) 82, 111, 113, 207, 244, 299, 321, 362, 364
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
HapII CCGG 1 cut(s) 139
Hin1II CATG 1 cut(s) 209
HinfI GANTC 3 cut(s) 39, 179, 202
HpaII CCGG 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 184, 201
Hpy188III TCNNGA 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 179, 364
HpyCH4III ACNGT 2 cut(s) 9, 126
HpyCH4V TGCA 2 cut(s) 17, 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 257
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 72
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 9 cut(s) 3, 27, 37, 83, 152, 177, 276, 323, 334
Lsp1109I GCAGC 1 cut(s) 165
MalI GATC 1 cut(s) 74
MboI GATC 1 cut(s) 72
MboII GAAGA 2 cut(s) 172, 181
MluCI AATT 2 cut(s) 144, 255
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 1 cut(s) 139
MwoI GCNNNNNNNGC 2 cut(s) 10, 257
NdeII GATC 1 cut(s) 72
NlaIII CATG 1 cut(s) 209
PfeI GAWTC 2 cut(s) 39, 179
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PstI CTGCAG 2 cut(s) 19, 155
RseI CAYNNNNRTG 1 cut(s) 296
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 1 cut(s) 72
SbfI CCTGCAGG 1 cut(s) 19
SchI GAGTC 1 cut(s) 211
SdaI CCTGCAGG 1 cut(s) 19
SetI ASST 4 cut(s) 99, 253, 281, 375
SfcI CTRYAG 3 cut(s) 5, 15, 151
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse8387I CCTGCAGG 1 cut(s) 19
Sse9I AATT 2 cut(s) 144, 255
SsiI CCGC 3 cut(s) 101, 353, 357
TaaI ACNGT 2 cut(s) 9, 126
TaqI TCGA 2 cut(s) 132, 333
TasI AATT 2 cut(s) 144, 255
TfiI GAWTC 2 cut(s) 39, 179
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 7 cut(s) 95, 118, 182, 201, 280, 365, 369
TspRI CASTG 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.