Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001501.1

Orthogroup ID

OG0011600

Physical Location & Seq

Genomic Coordinates Reverse (-)

133012 .. 136657

Gene Structure 3646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001501.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atgccttcccggcttgctttcttggacctaaagacttctccttcgatgattactgctttaatgaataccctctctttgggaagcgacgaactaattcactcacctgaaggcgagcgacaccgaagcgaagtaactagaactccaagcgaagtaagacacgacatcgatggttctgaaagaaagcaaaaggtatccgcagcgtcagcgagccaaaaaaggaagggtgaaattgtgatggtgaatcttcggagcttaagagtgaggtttgggatgctcaggatggcaattgtggtggatgctacagtctcctgcaggcttaagattgaaaggaggattccttttcggctagagatggtttcacttgacaatctccttataccatctatccaagctggcggttcattatatgatgttgatattgttcatcgaataccgccttacctgagcttacaaaagttcattgctatgattgaaatcctgccttattatgctcgtgtcatcgatgatgggctttacagggtgggcgggcatgcaatcaatgagttaaatggctactccttactctacttgcagcgcgcagacgcagtcttgtccaccagagcgtcgatgaacgaagcggtcccaccgccaggggaaggactagaaccttcagcagtctctgctcctgtggttggaaccggacttactaaccttgctaaccgagccccaattcttcaataccaacaggcagacgtatttatagccacgaagattcaagtgtattcggggcgtgagcttgattgcctttcctggcaaaacttctttgactacataggcccgcttgaactttcctctaggatcatggagaggggtccaattctcgctcagcttcagcttcacaggttggatatgtctgatctttaccttcttatggaaagctttggcattcctcctttgagaaccctgcgtatggtggagtgccttcatcctctgctcttcatcagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

328

Amino Acids

36.7

Weight (kDa)

7.06

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011600)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_c1g00620
rosa_chinensis	RchiOBHm_Chr6g0251061 RchiOBHm_Chr6g0251071 RchiOBHm_MTg0498911 RchiOBHm_MTg0498921
rosa_laevigata	RLG00000000139 RLG00000000140 RLG00000000156 RLG00000000414 RLG00000000487
rosa_multiflora	Rmu_co8337121.1_g000001 Rmu_sc0001501.1_g000034
rosa_roxburghii	Rroxscaffold_2G00119520 Rroxscaffold_6G00392880
rosa_rugosa	Rorug05G0446900
rosa_samantha	Rh1BG017800 Rh1BG017900 Rh1BG020000 Rh1BG020100 Rh5CG062500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	576
AciI	CCGC	7 cut(s)	195, 396, 434, 525, 617, 626, 818
AclWI	GGATC	1 cut(s)	845
AcuI	CTGAAG	3 cut(s)	126, 633, 854
AfiI	CCNNNNNNNGG	6 cut(s)	76, 629, 635, 671, 910, 949
AflII	CTTAAG	2 cut(s)	253, 317
AgsI	TTSAA	5 cut(s)	326, 473, 716, 755, 824
AjnI	CCWGG	2 cut(s)	628, 788
AluBI	AGCT	8 cut(s)	252, 392, 447, 775, 868, 874, 918, 984
AluI	AGCT	8 cut(s)	252, 392, 447, 775, 868, 874, 918, 984
Alw26I	GTCTC	2 cut(s)	310, 661
AlwI	GGATC	1 cut(s)	845
AlwNI	CAGNNNCTG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	814
ApeKI	GCWGC	2 cut(s)	197, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	2 cut(s)	576, 578
AspS9I	GGNCC	4 cut(s)	25, 619, 815, 851
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	93, 236, 250
AvaII	GGWCC	3 cut(s)	25, 619, 851
BanII	GRGCYC	1 cut(s)	706
BauI	CACGAG	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	209, 583
BccI	CCATC	6 cut(s)	161, 229, 274, 346, 388, 500
BciT130I	CCWGG	2 cut(s)	630, 790
BciVI	GTATCC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	310, 661
BfaI	CTAG	4 cut(s)	135, 347, 641, 834
BfmI	CTRYAG	2 cut(s)	300, 310
BfrI	CTTAAG	2 cut(s)	253, 317
BfuI	GTATCC	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	198, 572
BlpI	GCTNAGC	1 cut(s)	864
BlsI	GCNGC	2 cut(s)	199, 573
Bme1390I	CCNGG	3 cut(s)	10, 630, 790
Bme18I	GGWCC	3 cut(s)	25, 619, 851
BmgT120I	GGNCC	4 cut(s)	25, 619, 815, 851
BmiI	GGNNCC	3 cut(s)	621, 676, 852
BmrFI	CCNGG	3 cut(s)	10, 630, 790
BmsI	GCATC	2 cut(s)	261, 286
Bpu10I	CCTNAGC	2 cut(s)	275, 443
Bpu1102I	GCTNAGC	1 cut(s)	864
BpuMI	CCSGG	1 cut(s)	10
Bsa29I	ATCGAT	2 cut(s)	165, 501
BsaBI	GATNNNNATC	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	629
BsaWI	WCCGGW	1 cut(s)	677
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	6 cut(s)	76, 629, 635, 671, 910, 949
Bse3DI	GCAATG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	2 cut(s)	630, 790
BseCI	ATCGAT	2 cut(s)	165, 501
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	4 cut(s)	276, 285, 301, 964
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	6 cut(s)	76, 629, 635, 671, 910, 949
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	289, 434, 878
BsePI	GCGCGC	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	209, 583
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	1 cut(s)	816
BshVI	ATCGAT	2 cut(s)	165, 501
BsiSI	CCGG	2 cut(s)	10, 678
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	6 cut(s)	76, 629, 635, 671, 910, 949
BsmAI	GTCTC	2 cut(s)	310, 661
BsmFI	GGGAC	1 cut(s)	605
BsmI	GAATGC	1 cut(s)	924
BsnI	GGCC	1 cut(s)	816
Bsp1286I	GDGCHC	1 cut(s)	706
Bsp143I	GATC	2 cut(s)	837, 895
Bsp1720I	GCTNAGC	1 cut(s)	864
BspACI	CCGC	7 cut(s)	195, 396, 434, 525, 617, 626, 818
BspANI	GGCC	1 cut(s)	816
BspCNI	CTCAG	3 cut(s)	288, 435, 877
BspDI	ATCGAT	2 cut(s)	165, 501
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	3 cut(s)	621, 676, 852
BspMAI	CTGCAG	1 cut(s)	314
BspPI	GGATC	1 cut(s)	845
BspQI	GCTCTTC	1 cut(s)	980
BspTI	CTTAAG	2 cut(s)	253, 317
BsrDI	GCAATG	1 cut(s)	459
BssECI	CCNNGG	1 cut(s)	629
BssHII	GCGCGC	1 cut(s)	574
BssMI	GATC	2 cut(s)	837, 895
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	630, 790
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	980
BstAFI	CTTAAG	2 cut(s)	253, 317
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	9 cut(s)	15, 113, 208, 314, 394, 527, 531, 576, 818
BstDEI	CTNAG	3 cut(s)	275, 443, 864
BstF5I	GGATG	4 cut(s)	276, 285, 301, 964
BstFNI	CGCG	1 cut(s)	576
BstHHI	GCGC	2 cut(s)	576, 578
BstKTI	GATC	2 cut(s)	840, 898
BstMAI	GTCTC	2 cut(s)	310, 661
BstMBI	GATC	2 cut(s)	837, 895
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 203, 659, 701
BstNI	CCWGG	2 cut(s)	630, 790
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	3 cut(s)	8, 628, 788
BstSFI	CTRYAG	2 cut(s)	300, 310
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	209, 583
Bsu15I	ATCGAT	2 cut(s)	165, 501
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	816
BsuTUI	ATCGAT	2 cut(s)	165, 501
BtsCI	GGATG	4 cut(s)	276, 285, 301, 964
Cac8I	GCNNGC	9 cut(s)	15, 113, 208, 314, 394, 527, 531, 576, 818
CaiI	CAGNNNCTG	1 cut(s)	659
CfoI	GCGC	2 cut(s)	576, 578
Cfr13I	GGNCC	4 cut(s)	25, 619, 815, 851
ClaI	ATCGAT	2 cut(s)	165, 501
CseI	GACGC	3 cut(s)	189, 590, 591
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviAII	CATG	2 cut(s)	530, 841
DdeI	CTNAG	3 cut(s)	275, 443, 864
DpnI	GATC	2 cut(s)	839, 897
DpnII	GATC	2 cut(s)	837, 895
Eam1104I	CTCTTC	1 cut(s)	980
EarI	CTCTTC	1 cut(s)	980
Eco24I	GRGCYC	1 cut(s)	706
Eco47I	GGWCC	3 cut(s)	25, 619, 851
Eco57I	CTGAAG	3 cut(s)	126, 633, 854
EcoRII	CCWGG	2 cut(s)	628, 788
EcoT38I	GRGCYC	1 cut(s)	706
FaeI	CATG	2 cut(s)	533, 844
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	2 cut(s)	529, 840
FauI	CCCGC	2 cut(s)	518, 825
Fnu4HI	GCNGC	2 cut(s)	198, 572
FokI	GGATG	4 cut(s)	283, 292, 308, 951
FriOI	GRGCYC	1 cut(s)	706
Fsp4HI	GCNGC	2 cut(s)	198, 572
FspBI	CTAG	4 cut(s)	135, 347, 641, 834
GlaI	GCGC	2 cut(s)	575, 577
GluI	GCNGC	2 cut(s)	198, 572
HaeIII	GGCC	1 cut(s)	816
HapII	CCGG	2 cut(s)	10, 678
HgaI	GACGC	3 cut(s)	189, 590, 591
HhaI	GCGC	2 cut(s)	576, 578
Hin1II	CATG	2 cut(s)	533, 844
Hin6I	GCGC	2 cut(s)	574, 576
HinP1I	GCGC	2 cut(s)	574, 576
HindIII	AAGCTT	1 cut(s)	916
HinfI	GANTC	3 cut(s)	241, 334, 751
HpaII	CCGG	2 cut(s)	10, 678
HphI	GGTGA	3 cut(s)	93, 236, 250
Hpy166II	GTNNAC	1 cut(s)	594
Hpy188I	TCNGA	3 cut(s)	175, 249, 895
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	594
Hpy99I	CGWCG	2 cut(s)	89, 607
HpyAV	CCTTC	8 cut(s)	15, 51, 101, 214, 629, 657, 914, 971
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	732
HpyCH4V	TGCA	3 cut(s)	312, 533, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 203, 659, 701
HpyF3I	CTNAG	3 cut(s)	275, 443, 864
HpySE526I	ACGT	1 cut(s)	732
Hsp92II	CATG	2 cut(s)	533, 844
HspAI	GCGC	2 cut(s)	574, 576
Kzo9I	GATC	2 cut(s)	837, 895
LguI	GCTCTTC	1 cut(s)	980
LmnI	GCTCC	2 cut(s)	249, 667
Lsp1109I	GCAGC	2 cut(s)	209, 583
LweI	GCATC	2 cut(s)	261, 286
MaeI	CTAG	4 cut(s)	135, 347, 641, 834
MaeII	ACGT	1 cut(s)	732
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	839, 897
MboI	GATC	2 cut(s)	837, 895
MboII	GAAGA	4 cut(s)	236, 704, 760, 967
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	706
MluCI	AATT	5 cut(s)	93, 228, 285, 708, 855
MmeI	TCCRAC	2 cut(s)	652, 864
MnlI	CCTC	7 cut(s)	80, 255, 324, 840, 841, 939, 978
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	4 cut(s)	59, 254, 318, 545
MslI	CAYNNNNRTG	1 cut(s)	464
MspCI	CTTAAG	2 cut(s)	253, 317
MspI	CCGG	2 cut(s)	10, 678
MspR9I	CCNGG	3 cut(s)	10, 630, 790
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	924
MvaI	CCWGG	2 cut(s)	630, 790
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	4 cut(s)	10, 203, 659, 701
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	2 cut(s)	837, 895
NlaIII	CATG	2 cut(s)	533, 844
NlaIV	GGNNCC	3 cut(s)	621, 676, 852
NspI	RCATGY	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	533
PauI	GCGCGC	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	980
PctI	GAATGC	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	241, 334, 751
PflFI	GACNNNGTC	1 cut(s)	584
PkrI	GCNGC	2 cut(s)	199, 573
Psp6I	CCWGG	2 cut(s)	628, 788
PspGI	CCWGG	2 cut(s)	628, 788
PspN4I	GGNNCC	3 cut(s)	621, 676, 852
PspPI	GGNCC	4 cut(s)	25, 619, 815, 851
PsrI	GAACNNNNNNTAC	2 cut(s)	667, 699
PstI	CTGCAG	1 cut(s)	314
PstNI	CAGNNNCTG	1 cut(s)	659
PsyI	GACNNNGTC	1 cut(s)	584
PteI	GCGCGC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	980
SaqAI	TTAA	4 cut(s)	59, 254, 318, 545
SatI	GCNGC	2 cut(s)	198, 572
Sau3AI	GATC	2 cut(s)	837, 895
Sau96I	GGNCC	4 cut(s)	25, 619, 815, 851
SbfI	CCTGCAGG	1 cut(s)	314
ScrFI	CCNGG	3 cut(s)	10, 630, 790
SdaI	CCTGCAGG	1 cut(s)	314
SduI	GDGCHC	1 cut(s)	706
SfaNI	GCATC	2 cut(s)	261, 286
SfcI	CTRYAG	2 cut(s)	300, 310
SinI	GGWCC	3 cut(s)	25, 619, 851
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	253, 317
SmoI	CTYRAG	2 cut(s)	253, 317
SphI	GCATGC	1 cut(s)	533
Sse8387I	CCTGCAGG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	93, 228, 285, 708, 855
SsiI	CCGC	7 cut(s)	195, 396, 434, 525, 617, 626, 818
SspMI	CTAG	4 cut(s)	135, 347, 641, 834
StyD4I	CCNGG	3 cut(s)	8, 628, 788
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	735
TaqI	TCGA	5 cut(s)	44, 165, 427, 501, 605
TasI	AATT	5 cut(s)	93, 228, 285, 708, 855
TfiI	GAWTC	3 cut(s)	241, 334, 751
Tru1I	TTAA	4 cut(s)	59, 254, 318, 545
Tru9I	TTAA	4 cut(s)	59, 254, 318, 545
TseI	GCWGC	2 cut(s)	197, 571
TspDTI	ATGAA	7 cut(s)	77, 390, 413, 448, 623, 953, 967
Tth111I	GACNNNGTC	1 cut(s)	584
Vha464I	CTTAAG	2 cut(s)	253, 317
VpaK11BI	GGWCC	3 cut(s)	25, 619, 851
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	4 cut(s)	135, 347, 641, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.