Rh1BG020000

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011600
Physical Location & Seq
Forward (+)
2645362 .. 2645643
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG020000.1

Sequence Viewer

Length: 282 bp
ATGAAGATTGTGGAATCTGAAGGCACTGGTTCTCCGAGTCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACACATATTTAGCTGAAATTGCTCCTGAGCCTTACCCGAGCTTAAAAAAGTTCATTGCTATGATTGAAATCCTGCCTTATTATGCTCGTGTCATCGATGATGGGCTTTACAGGGCGGGCGGTATATATTTGAAGGTTCATTCATTGCTAACTGAACAAGAATGCAAGAAGCTCAGCGGGTTCATAGACTGCAAAAAGCTCTCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

93

Amino Acids

10.35

Weight (kDa)

7.75

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 8 - 93 9.7e-29 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 188, 192, 249
AcuI CTGAAG 1 cut(s) 39
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 3 cut(s) 55, 140, 205
AluBI AGCT 4 cut(s) 86, 114, 244, 271
AluI AGCT 4 cut(s) 86, 114, 244, 271
Ama87I CYCGRG 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 109
BauI CACGAG 1 cut(s) 159
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 80
BlpI GCTNAGC 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 109
Bpu10I CCTNAGC 1 cut(s) 99
Bpu1102I GCTNAGC 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 2 cut(s) 126, 215
Bse8I GATNNNNATC 1 cut(s) 140
BseCI ATCGAT 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 2 cut(s) 126, 215
BseMII CTCAG 2 cut(s) 90, 259
BseNI ACTGG 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 41
BsmI GAATGC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 245
BspACI CCGC 3 cut(s) 188, 192, 249
BspCNI CTCAG 2 cut(s) 91, 258
BspDI ATCGAT 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 126, 215
BsrI ACTGG 1 cut(s) 31
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 99, 245
BstMWI GCNNNNNNNGC 1 cut(s) 92
Bsu15I ATCGAT 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 168
CviAII CATG 1 cut(s) 41
CviJI RGCY 7 cut(s) 67, 86, 103, 114, 178, 244, 271
CviKI_1 RGCY 7 cut(s) 67, 86, 103, 114, 178, 244, 271
DdeI CTNAG 2 cut(s) 99, 245
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 109
FaeI CATG 1 cut(s) 44
FaiI YATR 7 cut(s) 42, 79, 134, 156, 197, 199, 257
FatI CATG 1 cut(s) 40
FauI CCCGC 2 cut(s) 181, 242
Hin1II CATG 1 cut(s) 44
HinfI GANTC 2 cut(s) 14, 37
Hpy188I TCNGA 2 cut(s) 19, 36
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 14, 199
HpyCH4V TGCA 2 cut(s) 237, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 2 cut(s) 99, 245
Hsp92II CATG 1 cut(s) 44
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 12, 111, 158, 169
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 90
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 40
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 92
NlaIII CATG 1 cut(s) 44
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 116
SchI GAGTC 1 cut(s) 46
SetI ASST 5 cut(s) 88, 116, 210, 246, 273
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 1 cut(s) 90
SsiI CCGC 3 cut(s) 188, 192, 249
TaqI TCGA 1 cut(s) 168
TasI AATT 1 cut(s) 90
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 1 cut(s) 31
TspDTI ATGAA 6 cut(s) 17, 36, 115, 200, 204, 244
TspRI CASTG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.