RchiOBHm_Chr6g0251061

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
6403515 .. 6403778
264 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22507

Sequence Viewer

Length: 264 bp
ATGAGAGTGAGGCTGAGTGAGTTGGAGAAGGAACAGTTGTTTATGAAACAAGGAATGATGGATAAAACAGGAAATGTCAAGACTTTCTTGACCGCAATCTCTAAGGGGATTGTAAGGATTGTAATTTTGAGTGGTCAAGCAGGAGGTTGCGAAGCAAAGGCACTGAACGAAGTGAAGTGGGAAGAAAGAGAGAGACTCTTTATGAAAGAAGTCCATTTGTGTTCAAGCGTACCGAGCCAATCTGAGCGTCTTCAACTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.88

Weight (kDa)

9.1

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 2 cut(s) 225, 254
Alw26I GTCTC 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 242
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 242
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BseMII CTCAG 2 cut(s) 5, 234
BsmAI GTCTC 1 cut(s) 187
BspACI CCGC 1 cut(s) 93
BspCNI CTCAG 2 cut(s) 6, 235
Bst4CI ACNGT 1 cut(s) 36
BstDEI CTNAG 4 cut(s) 14, 102, 243, 257
BstMAI GTCTC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 161
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 230
CviJI RGCY 2 cut(s) 13, 237
CviKI_1 RGCY 2 cut(s) 13, 237
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 4 cut(s) 14, 102, 243, 257
FaiI YATR 2 cut(s) 44, 203
FalI AAGNNNNNCTT 2 cut(s) 71, 103
HgaI GACGC 1 cut(s) 236
HinfI GANTC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 2 cut(s) 79, 88
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 4 cut(s) 14, 102, 243, 257
LpnPI CCDG 2 cut(s) 54, 126
MboII GAAGA 2 cut(s) 194, 242
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 2 cut(s) 3, 137
MseI TTAA 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 234
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 262
SchI GAGTC 1 cut(s) 189
SetI ASST 1 cut(s) 148
SgeI CNNG 8 cut(s) 62, 81, 91, 100, 149, 153, 237, 246
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 93
TaaI ACNGT 1 cut(s) 36
TasI AATT 1 cut(s) 123
Tru1I TTAA 1 cut(s) 262
Tru9I TTAA 1 cut(s) 262
TscAI CASTG 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 59, 218
TspRI CASTG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.