RLG00000000414

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011600
Physical Location & Seq
Forward (+)
890436 .. 891109
674 bp
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UTR
Exon/CDS
Intron
RLM00000000414

Sequence Viewer

Length: 417 bp
ATGAAGATTGTGGAATCTGAAGGCACTGGTTCTCCGAGTCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACACATATTTAGCTGAAATTGCTCCTGAGCCTTACCCGAGCTTACAAAAGTTCATTGCTATGATTGAAATCCTGCCTTATTATGCTCGTGTCATCGATGATGGGCTTTACAGGGCAGGCGGTATATATTTGAAGACACAAGAACTGAAGCTGGAGATTTCAAGAATGAGAGTGAGGCTGAGTGAGTTGGAGAAGGAACAGTTGTTTATGAAACAAGGAATGATGGATAAAACAGGAAATGGCAAGACTTTCTTGACCGCAATCTCTAAGGGGATTGTAAGGATTGTAATTTTGAGTGGTCAAGCAGGAGGTTGCGAAGCAAAGGCACTGAACGAAGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

139

Amino Acids

15.27

Weight (kDa)

8.97

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 8 - 72 4.4e-18 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 330
AcuI CTGAAG 2 cut(s) 39, 239
AfiI CCNNNNNNNGG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 55, 140, 205, 234
AluBI AGCT 3 cut(s) 86, 114, 223
AluI AGCT 3 cut(s) 86, 114, 223
Ama87I CYCGRG 1 cut(s) 109
AvaI CYCGRG 1 cut(s) 109
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 212
BccI CCATC 2 cut(s) 167, 289
BceAI ACGGC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 245
Bpu10I CCTNAGC 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 140
BseCI ATCGAT 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 2 cut(s) 90, 242
BseNI ACTGG 1 cut(s) 31
BshVI ATCGAT 1 cut(s) 168
BsiHKCI CYCGRG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 109
BspACI CCGC 2 cut(s) 192, 330
BspCNI CTCAG 2 cut(s) 91, 243
BspDI ATCGAT 1 cut(s) 168
BsrDI GCAATG 1 cut(s) 126
BsrI ACTGG 1 cut(s) 31
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 99, 251, 339
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 168
BtsIMutI CAGTG 2 cut(s) 24, 398
Cac8I GCNNGC 1 cut(s) 190
ClaI ATCGAT 1 cut(s) 168
CviAII CATG 1 cut(s) 41
CviJI RGCY 7 cut(s) 67, 86, 103, 114, 178, 223, 250
CviKI_1 RGCY 7 cut(s) 67, 86, 103, 114, 178, 223, 250
DdeI CTNAG 3 cut(s) 99, 251, 339
Eco57I CTGAAG 2 cut(s) 39, 239
Eco88I CYCGRG 1 cut(s) 109
FaeI CATG 1 cut(s) 44
FaiI YATR 7 cut(s) 42, 79, 134, 156, 197, 199, 281
FalI AAGNNNNNCTT 2 cut(s) 308, 340
FatI CATG 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 245
Hin1II CATG 1 cut(s) 44
HinfI GANTC 2 cut(s) 14, 37
Hpy188I TCNGA 2 cut(s) 19, 36
Hpy188III TCNNGA 3 cut(s) 98, 234, 325
HpyAV CCTTC 2 cut(s) 14, 259
HpyCH4III ACNGT 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 3 cut(s) 99, 251, 339
Hsp92II CATG 1 cut(s) 44
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 8 cut(s) 12, 111, 158, 169, 174, 209, 291, 363
MboII GAAGA 2 cut(s) 16, 217
MluCI AATT 2 cut(s) 90, 360
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 40, 240
MnlI CCTC 2 cut(s) 240, 374
MslI CAYNNNNRTG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 92
NlaIII CATG 1 cut(s) 44
PfeI GAWTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 131
SchI GAGTC 1 cut(s) 46
SetI ASST 4 cut(s) 88, 116, 225, 385
SmiMI CAYNNNNRTG 1 cut(s) 131
Sse9I AATT 2 cut(s) 90, 360
SsiI CCGC 2 cut(s) 192, 330
TaaI ACNGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 168
TasI AATT 2 cut(s) 90, 360
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 2 cut(s) 31, 405
TspDTI ATGAA 4 cut(s) 17, 36, 115, 296
TspRI CASTG 2 cut(s) 31, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.