Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0011600

Physical Location & Seq

Genomic Coordinates Reverse (-)

676132 .. 677516

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGAGTGAGGCTGAGTGAGTTGGAGAAGGAACAGTTGTTTATGAAACAAGGAATGATGGATAAAACAGGAAATGGCAAGACTTTCTTGACCGCAATCTCTAAGGGGATTGTAAGGATTGTAATTTTGAGTGGTCAAGCAGGAGGTTGCGAAGCAAAGGCACTGAACGAAGAGGGGAATGCAAAGGATGGATCTTTGTATCGGATGCTACTGGTAGCTAAGCATTTGGATCTGCTACTCGGATTGCAAGTGGTGAAAAAAACTGGTGGCGCTGAGCTATGCATGGACGCCTATCGAGCCGCCGTTGGCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

105

Amino Acids

11.17

Weight (kDa)

9.23

Isoelectric Point (pI)

13.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011600)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_c1g00620
rosa_chinensis	RchiOBHm_Chr6g0251061 RchiOBHm_Chr6g0251071 RchiOBHm_MTg0498911 RchiOBHm_MTg0498921
rosa_laevigata	RLG00000000139 RLG00000000140 RLG00000000156 RLG00000000414 RLG00000000487
rosa_multiflora	Rmu_co8337121.1_g000001 Rmu_sc0001501.1_g000034
rosa_roxburghii	Rroxscaffold_2G00119520 Rroxscaffold_6G00392880
rosa_rugosa	Rorug05G0446900
rosa_samantha	Rh1BG017800 Rh1BG017900 Rh1BG020000 Rh1BG020100 Rh5CG062500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	2 cut(s)	93, 300
AclWI	GGATC	2 cut(s)	199, 237
AcyI	GRCGYC	2 cut(s)	288, 309
AluBI	AGCT	2 cut(s)	218, 277
AluI	AGCT	2 cut(s)	218, 277
AlwI	GGATC	2 cut(s)	199, 237
AspLEI	GCGC	2 cut(s)	272, 311
AsuHPI	GGTGA	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	308
BccI	CCATC	2 cut(s)	52, 182
BceAI	ACGGC	1 cut(s)	287
BfoI	RGCGCY	2 cut(s)	273, 312
BisI	GCNGC	1 cut(s)	300
BlpI	GCTNAGC	2 cut(s)	219, 273
BlsI	GCNGC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	310
BmsI	GCATC	1 cut(s)	195
Bpu1102I	GCTNAGC	2 cut(s)	219, 273
BsaHI	GRCGYC	2 cut(s)	288, 309
Bse1I	ACTGG	2 cut(s)	216, 268
BseGI	GGATG	2 cut(s)	193, 210
BseMII	CTCAG	2 cut(s)	5, 264
BseNI	ACTGG	2 cut(s)	216, 268
BshNI	GGYRCC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	191, 229
Bsp1720I	GCTNAGC	2 cut(s)	219, 273
BspACI	CCGC	2 cut(s)	93, 300
BspCNI	CTCAG	2 cut(s)	6, 265
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	2 cut(s)	199, 237
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	2 cut(s)	216, 268
BssMI	GATC	2 cut(s)	191, 229
BssNI	GRCGYC	2 cut(s)	288, 309
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	2 cut(s)	288, 309
BstDEI	CTNAG	4 cut(s)	14, 102, 219, 273
BstF5I	GGATG	2 cut(s)	193, 210
BstH2I	RGCGCY	2 cut(s)	273, 312
BstHHI	GCGC	2 cut(s)	272, 311
BstKTI	GATC	2 cut(s)	194, 232
BstMBI	GATC	2 cut(s)	191, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 308
BstX2I	RGATCY	2 cut(s)	191, 229
BstYI	RGATCY	2 cut(s)	191, 229
BtsCI	GGATG	2 cut(s)	193, 210
BtsIMutI	CAGTG	1 cut(s)	161
CfoI	GCGC	2 cut(s)	272, 311
CseI	GACGC	1 cut(s)	296
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	4 cut(s)	13, 218, 277, 299
CviKI_1	RGCY	4 cut(s)	13, 218, 277, 299
DdeI	CTNAG	4 cut(s)	14, 102, 219, 273
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	2 cut(s)	193, 231
DpnII	GATC	2 cut(s)	191, 229
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
FaeI	CATG	1 cut(s)	286
FaiI	YATR	3 cut(s)	44, 280, 284
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	200, 217
Fsp4HI	GCNGC	1 cut(s)	300
GlaI	GCGC	2 cut(s)	271, 310
GluI	GCNGC	1 cut(s)	300
HaeII	RGCGCY	2 cut(s)	273, 312
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	2 cut(s)	272, 311
Hin1I	GRCGYC	2 cut(s)	288, 309
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	2 cut(s)	270, 309
HinP1I	GCGC	2 cut(s)	270, 309
HphI	GGTGA	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	204, 242
Hpy188III	TCNNGA	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	182, 247, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 308
HpyF3I	CTNAG	4 cut(s)	14, 102, 219, 273
Hsp92I	GRCGYC	2 cut(s)	288, 309
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	2 cut(s)	270, 309
KasI	GGCGCC	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	191, 229
LpnPI	CCDG	4 cut(s)	54, 126, 197, 249
LweI	GCATC	1 cut(s)	195
MalI	GATC	2 cut(s)	193, 231
MboI	GATC	2 cut(s)	191, 229
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	2 cut(s)	191, 229
MluCI	AATT	1 cut(s)	123
Mly113I	GGCGCC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	3, 137, 166
Mph1103I	ATGCAT	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	184
MwoI	GCNNNNNNNGC	2 cut(s)	296, 308
NarI	GGCGCC	1 cut(s)	309
NdeII	GATC	2 cut(s)	191, 229
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	310
NsiI	ATGCAT	1 cut(s)	284
PctI	GAATGC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	301
PluTI	GGCGCC	1 cut(s)	312
PspN4I	GGNNCC	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	191, 229
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	191, 229
SetI	ASST	3 cut(s)	148, 220, 279
SfaNI	GCATC	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	310
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	2 cut(s)	93, 300
SspDI	GGCGCC	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	295
TasI	AATT	1 cut(s)	123
TauI	GCSGC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	168
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.