Belongs to the NPH3 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_c1g00620 |
| rosa_chinensis | RchiOBHm_Chr6g0251061 RchiOBHm_Chr6g0251071 RchiOBHm_MTg0498911 RchiOBHm_MTg0498921 |
| rosa_laevigata | RLG00000000139 RLG00000000140 RLG00000000156 RLG00000000414 RLG00000000487 |
| rosa_multiflora | Rmu_co8337121.1_g000001 Rmu_sc0001501.1_g000034 |
| rosa_roxburghii | Rroxscaffold_2G00119520 Rroxscaffold_6G00392880 |
| rosa_rugosa | Rorug05G0446900 |
| rosa_samantha | Rh1BG017800 Rh1BG017900 Rh1BG020000 Rh1BG020100 Rh5CG062500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 25 |
| AciI | CCGC | 5 cut(s) | 82, 168, 335, 456, 546 |
| AcuI | CTGAAG | 1 cut(s) | 365 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 188 |
| AgsI | TTSAA | 4 cut(s) | 98, 202, 287, 360 |
| AluBI | AGCT | 4 cut(s) | 164, 233, 261, 349 |
| AluI | AGCT | 4 cut(s) | 164, 233, 261, 349 |
| Alw26I | GTCTC | 1 cut(s) | 602 |
| Ama87I | CYCGRG | 1 cut(s) | 256 |
| AvaI | CYCGRG | 1 cut(s) | 256 |
| BanI | GGYRCC | 1 cut(s) | 25 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 525, 557 |
| BauI | CACGAG | 1 cut(s) | 306 |
| BccI | CCATC | 4 cut(s) | 46, 160, 314, 415 |
| BceAI | ACGGC | 1 cut(s) | 227 |
| BcoDI | GTCTC | 1 cut(s) | 602 |
| BfaI | CTAG | 1 cut(s) | 670 |
| BfmI | CTRYAG | 1 cut(s) | 72 |
| BisI | GCNGC | 1 cut(s) | 169 |
| BlsI | GCNGC | 1 cut(s) | 170 |
| BmeT110I | CYCGRG | 1 cut(s) | 256 |
| BmiI | GGNNCC | 1 cut(s) | 27 |
| BmsI | GCATC | 2 cut(s) | 33, 58 |
| BpmI | CTGGAG | 1 cut(s) | 371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 47 |
| BpuEI | CTTGAG | 1 cut(s) | 110 |
| Bsa29I | ATCGAT | 1 cut(s) | 315 |
| BsaBI | GATNNNNATC | 2 cut(s) | 56, 287 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 163, 193, 599, 629 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 188 |
| Bse1I | ACTGG | 1 cut(s) | 178 |
| Bse3DI | GCAATG | 1 cut(s) | 273 |
| Bse8I | GATNNNNATC | 2 cut(s) | 56, 287 |
| BseCI | ATCGAT | 1 cut(s) | 315 |
| BseGI | GGATG | 3 cut(s) | 48, 57, 73 |
| BseJI | GATNNNNATC | 2 cut(s) | 56, 287 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BseMI | GCAATG | 1 cut(s) | 273 |
| BseMII | CTCAG | 2 cut(s) | 61, 368 |
| BseNI | ACTGG | 1 cut(s) | 178 |
| BshNI | GGYRCC | 1 cut(s) | 25 |
| BshVI | ATCGAT | 1 cut(s) | 315 |
| BsiHKCI | CYCGRG | 1 cut(s) | 256 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BsmAI | GTCTC | 1 cut(s) | 602 |
| BsmBI | CGTCTC | 1 cut(s) | 602 |
| BsoBI | CYCGRG | 1 cut(s) | 256 |
| Bsp143I | GATC | 1 cut(s) | 139 |
| BspACI | CCGC | 5 cut(s) | 82, 168, 335, 456, 546 |
| BspCNI | CTCAG | 2 cut(s) | 60, 369 |
| BspDI | ATCGAT | 1 cut(s) | 315 |
| BspHI | TCATGA | 1 cut(s) | 570 |
| BspLI | GGNNCC | 1 cut(s) | 27 |
| BspT107I | GGYRCC | 1 cut(s) | 25 |
| BsrDI | GCAATG | 1 cut(s) | 273 |
| BsrI | ACTGG | 1 cut(s) | 178 |
| BssMI | GATC | 1 cut(s) | 139 |
| BssSI | CACGAG | 1 cut(s) | 306 |
| Bst2BI | CACGAG | 1 cut(s) | 306 |
| Bst4CI | ACNGT | 2 cut(s) | 76, 399 |
| BstC8I | GCNNGC | 4 cut(s) | 82, 86, 166, 337 |
| BstDEI | CTNAG | 3 cut(s) | 47, 377, 465 |
| BstF5I | GGATG | 3 cut(s) | 48, 57, 73 |
| BstKTI | GATC | 1 cut(s) | 142 |
| BstMAI | GTCTC | 1 cut(s) | 602 |
| BstMBI | GATC | 1 cut(s) | 139 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 77, 239, 545 |
| BstSFI | CTRYAG | 1 cut(s) | 72 |
| Bsu15I | ATCGAT | 1 cut(s) | 315 |
| BsuTUI | ATCGAT | 1 cut(s) | 315 |
| BtsCI | GGATG | 3 cut(s) | 48, 57, 73 |
| BtsIMutI | CAGTG | 2 cut(s) | 171, 524 |
| Cac8I | GCNNGC | 4 cut(s) | 82, 86, 166, 337 |
| CciI | TCATGA | 1 cut(s) | 570 |
| ClaI | ATCGAT | 1 cut(s) | 315 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 45, 80 |
| CviAII | CATG | 2 cut(s) | 188, 571 |
| CviJI | RGCY | 9 cut(s) | 88, 118, 164, 214, 233, 261, 325, 349, 376 |
| CviKI_1 | RGCY | 9 cut(s) | 88, 118, 164, 214, 233, 261, 325, 349, 376 |
| DdeI | CTNAG | 3 cut(s) | 47, 377, 465 |
| DpnI | GATC | 1 cut(s) | 141 |
| DpnII | GATC | 1 cut(s) | 139 |
| Eco57I | CTGAAG | 1 cut(s) | 365 |
| Eco88I | CYCGRG | 1 cut(s) | 256 |
| Esp3I | CGTCTC | 1 cut(s) | 602 |
| FaeI | CATG | 2 cut(s) | 191, 574 |
| FaiI | YATR | 7 cut(s) | 149, 189, 226, 281, 303, 407, 572 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 434, 466 |
| FatI | CATG | 2 cut(s) | 187, 570 |
| FauI | CCCGC | 3 cut(s) | 89, 328, 553 |
| Fnu4HI | GCNGC | 1 cut(s) | 169 |
| FokI | GGATG | 3 cut(s) | 55, 64, 80 |
| Fsp4HI | GCNGC | 1 cut(s) | 169 |
| FspBI | CTAG | 1 cut(s) | 670 |
| GluI | GCNGC | 1 cut(s) | 169 |
| GsuI | CTGGAG | 1 cut(s) | 371 |
| Hin1II | CATG | 2 cut(s) | 191, 574 |
| HinfI | GANTC | 2 cut(s) | 106, 184 |
| Hpy188I | TCNGA | 2 cut(s) | 183, 586 |
| Hpy188III | TCNNGA | 6 cut(s) | 49, 245, 360, 451, 571, 618 |
| HpyAV | CCTTC | 1 cut(s) | 385 |
| HpyCH4III | ACNGT | 2 cut(s) | 76, 399 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 77, 239, 545 |
| HpyF3I | CTNAG | 3 cut(s) | 47, 377, 465 |
| Hsp92II | CATG | 2 cut(s) | 191, 574 |
| Kzo9I | GATC | 1 cut(s) | 139 |
| LmnI | GCTCC | 2 cut(s) | 247, 671 |
| LweI | GCATC | 2 cut(s) | 33, 58 |
| MaeI | CTAG | 1 cut(s) | 670 |
| MalI | GATC | 1 cut(s) | 141 |
| MboI | GATC | 1 cut(s) | 139 |
| MboII | GAAGA | 1 cut(s) | 586 |
| MluCI | AATT | 2 cut(s) | 237, 486 |
| MlyI | GAGTC | 1 cut(s) | 193 |
| MmeI | TCCRAC | 2 cut(s) | 187, 366 |
| MnlI | CCTC | 5 cut(s) | 27, 96, 366, 500, 550 |
| MslI | CAYNNNNRTG | 1 cut(s) | 278 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 77, 239, 545 |
| NdeII | GATC | 1 cut(s) | 139 |
| NlaIII | CATG | 2 cut(s) | 191, 574 |
| NlaIV | GGNNCC | 1 cut(s) | 27 |
| PagI | TCATGA | 1 cut(s) | 570 |
| PfeI | GAWTC | 1 cut(s) | 106 |
| PflFI | GACNNNGTC | 1 cut(s) | 613 |
| PkrI | GCNGC | 1 cut(s) | 170 |
| PleI | GAGTC | 1 cut(s) | 192 |
| PpsI | GAGTC | 1 cut(s) | 192 |
| PspN4I | GGNNCC | 1 cut(s) | 27 |
| PsyI | GACNNNGTC | 1 cut(s) | 613 |
| RseI | CAYNNNNRTG | 1 cut(s) | 278 |
| SatI | GCNGC | 1 cut(s) | 169 |
| Sau3AI | GATC | 1 cut(s) | 139 |
| SchI | GAGTC | 1 cut(s) | 193 |
| SetI | ASST | 9 cut(s) | 38, 166, 235, 263, 351, 511, 561, 583, 637 |
| SfaNI | GCATC | 2 cut(s) | 33, 58 |
| SfcI | CTRYAG | 1 cut(s) | 72 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 278 |
| SmlI | CTYRAG | 1 cut(s) | 89 |
| SmoI | CTYRAG | 1 cut(s) | 89 |
| Sse9I | AATT | 2 cut(s) | 237, 486 |
| SsiI | CCGC | 5 cut(s) | 82, 168, 335, 456, 546 |
| SspMI | CTAG | 1 cut(s) | 670 |
| TaaI | ACNGT | 2 cut(s) | 76, 399 |
| TaqI | TCGA | 1 cut(s) | 315 |
| TasI | AATT | 2 cut(s) | 237, 486 |
| TauI | GCSGC | 1 cut(s) | 171 |
| TfiI | GAWTC | 1 cut(s) | 106 |
| TscAI | CASTG | 2 cut(s) | 178, 531 |
| TspDTI | ATGAA | 4 cut(s) | 183, 262, 422, 587 |
| TspGWI | ACGGA | 2 cut(s) | 23, 661 |
| TspRI | CASTG | 2 cut(s) | 178, 531 |
| Tth111I | GACNNNGTC | 1 cut(s) | 613 |
| XspI | CTAG | 1 cut(s) | 670 |