RLG00000000140

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Unknown
OG0011600
Physical Location & Seq
Reverse (-)
677729 .. 678242
514 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000140

Sequence Viewer

Length: 483 bp
ATGCCAACGGAGAAAAGTTGTTCGGTGCCACAGAGGTTTGGGATGCTCAGGATGGCAATCGTGGTGGATGCTACAGTCGCCTGCAGGCTTGAGATTGAAAGGAGGATTCCTTTTCGGCTGGAAATGGTTTCACTTGACGATCTCCTTATACCATCAATCCAAGCTGGCGGTTCATTATATGATGTTGATACTGTTCATCGAATACCGATTGTGGAATCTGAAGGCACTGGTTCTCCGAGTCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACACATATTTAGCTGAAATTGCTCCTGAGCCTTACCCGAGCTTACAAAAGTTCATTGCTATGATTGAAATCCTGCCTTATTATGCTCGTGTCATCGATGATGGGCTTTACAGGGCAGGCGGTATATATTTGAAGGTTCATTCATTGCTAACTGAACAAGAATGCAAGAAGCTCGGCGGGTTCATAGACTGCAAAAAGCTCTCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

161

Amino Acids

17.8

Weight (kDa)

5.92

Isoelectric Point (pI)

55.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 2 - 160 2e-44 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AciI CCGC 3 cut(s) 168, 393, 450
AcuI CTGAAG 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 4 cut(s) 98, 256, 341, 406
AluBI AGCT 5 cut(s) 164, 287, 315, 445, 472
AluI AGCT 5 cut(s) 164, 287, 315, 445, 472
Ama87I CYCGRG 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 310
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 360
BccI CCATC 3 cut(s) 46, 160, 368
BceAI ACGGC 1 cut(s) 281
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BfmI CTRYAG 2 cut(s) 72, 82
BmeT110I CYCGRG 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 2 cut(s) 33, 58
Bpu10I CCTNAGC 2 cut(s) 47, 300
BpuEI CTTGAG 1 cut(s) 110
Bsa29I ATCGAT 1 cut(s) 369
BsaBI GATNNNNATC 2 cut(s) 56, 341
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 2 cut(s) 327, 416
Bse8I GATNNNNATC 2 cut(s) 56, 341
BseCI ATCGAT 1 cut(s) 369
BseGI GGATG 3 cut(s) 48, 57, 73
BseJI GATNNNNATC 2 cut(s) 56, 341
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 2 cut(s) 327, 416
BseMII CTCAG 2 cut(s) 61, 291
BseNI ACTGG 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 242
BsmI GAATGC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 310
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 3 cut(s) 168, 393, 450
BspCNI CTCAG 2 cut(s) 60, 292
BspDI ATCGAT 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 25
BsrDI GCAATG 2 cut(s) 327, 416
BsrI ACTGG 1 cut(s) 232
BssMI GATC 1 cut(s) 139
BssSI CACGAG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 76, 193
BstC8I GCNNGC 4 cut(s) 82, 86, 166, 391
BstDEI CTNAG 2 cut(s) 47, 300
BstF5I GGATG 3 cut(s) 48, 57, 73
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 2 cut(s) 77, 293
BstSFI CTRYAG 2 cut(s) 72, 82
Bsu15I ATCGAT 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 369
BtsCI GGATG 3 cut(s) 48, 57, 73
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 4 cut(s) 82, 86, 166, 391
ClaI ATCGAT 1 cut(s) 369
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 1 cut(s) 242
DdeI CTNAG 2 cut(s) 47, 300
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 310
FaeI CATG 1 cut(s) 245
FatI CATG 1 cut(s) 241
FauI CCCGC 1 cut(s) 443
FokI GGATG 3 cut(s) 55, 64, 80
Hin1II CATG 1 cut(s) 245
HinfI GANTC 3 cut(s) 106, 215, 238
Hpy188I TCNGA 2 cut(s) 220, 237
Hpy188III TCNNGA 2 cut(s) 49, 299
HpyAV CCTTC 2 cut(s) 215, 400
HpyCH4III ACNGT 2 cut(s) 76, 193
HpyCH4V TGCA 3 cut(s) 84, 438, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 293
HpyF3I CTNAG 2 cut(s) 47, 300
Hsp92II CATG 1 cut(s) 245
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 301
LweI GCATC 2 cut(s) 33, 58
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MluCI AATT 1 cut(s) 291
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 2 cut(s) 27, 96
MslI CAYNNNNRTG 1 cut(s) 332
Mva1269I GAATGC 1 cut(s) 440
MwoI GCNNNNNNNGC 2 cut(s) 77, 293
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 27
NmeAIII GCCGAG 1 cut(s) 426
PctI GAATGC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 106, 215
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 332
Sau3AI GATC 1 cut(s) 139
SbfI CCTGCAGG 1 cut(s) 86
SchI GAGTC 1 cut(s) 247
SdaI CCTGCAGG 1 cut(s) 86
SetI ASST 7 cut(s) 38, 166, 289, 317, 411, 447, 474
SfaNI GCATC 2 cut(s) 33, 58
SfcI CTRYAG 2 cut(s) 72, 82
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse8387I CCTGCAGG 1 cut(s) 86
Sse9I AATT 1 cut(s) 291
SsiI CCGC 3 cut(s) 168, 393, 450
TaaI ACNGT 2 cut(s) 76, 193
TaqI TCGA 2 cut(s) 199, 369
TasI AATT 1 cut(s) 291
TfiI GAWTC 2 cut(s) 106, 215
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 7 cut(s) 162, 185, 237, 316, 401, 405, 445
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.