Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Reverse (-)

741214 .. 742083

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1005100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCAGTCACCTTGTTTGAAAGAGTTCACAGAATTATGCCTCAGCGCCTGCTGGCCCAACCCCTTACATAAGCAGTCAGCGGAGCACCACCGCACCATATCCAACTCCGGAAGCACTTCTGCCGCTTGCCGCCGTGACTTTGCGGCCACGACTTCATCATCCATCTTCCCAAACACCGAGTTCACCAACCACGAGTCTCTCCCGTCATTGCAGGAGTCCTTCACAGACTTCACAAATGTTTATTCCAAATACCATGAAACTGAAGAAGTTGATCAAATAAGAGCTAAAGAGTACGCCCATCTCTCACAGTCAAACCACACCTGCCTTGATTATATTGGCATCGGCCTCTTCTCATCTTCCCAGATGCACAAGCACGAATCCTCTCCGCAAGTAAGCTCCGATTTCCCCTTCTTTAGTGTATCGTACAAGACAGGGAGTTTGAAGACGCAGCTGCTTCACGGCGGCCAAGAATCAGAGCTTGAATCTGCAATGAGTAACAGGATTATGGAGTTTCTGAATATATCAGCAAATGATTACAGCATGGTTTTCACCGCCAACAGAACATCGGCTTTTAAACTTGTGGCGGAATCTTACCCGTTCAAGACTTGTAGGAAGCTGCTGACAGTGTATGATTATGAGAGTGAGGCAGTGGAAGGGATGATTAACAACTCAGAAAAGAGAGGAGCCAAAGCCATGGCGGCGGAGTTTTCGTGGCCCAGGCTGAGGATTCAATCGGCAAAGTTGAGGAAGATGGCTCCAGATATCCTTATGTATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

260

Amino Acids

29.23

Weight (kDa)

6.21

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	329
AccIII	TCCGGA	1 cut(s)	107
AcoI	YGGCCR	2 cut(s)	144, 463
AcuI	CTGAAG	1 cut(s)	282
AfaI	GTAC	2 cut(s)	293, 425
AfiI	CCNNNNNNNGG	1 cut(s)	723
AgsI	TTSAA	5 cut(s)	19, 442, 482, 601, 731
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	5 cut(s)	284, 396, 451, 478, 616
AluI	AGCT	5 cut(s)	284, 396, 451, 478, 616
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	201
AlwNI	CAGNNNCTG	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	5 cut(s)	53, 144, 343, 463, 713
ApeKI	GCWGC	3 cut(s)	448, 451, 616
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
Asp700I	GAANNNNTTC	2 cut(s)	23, 115
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	54, 714
AsuHPI	GGTGA	2 cut(s)	175, 541
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	87
BbvCI	CCTCAGC	2 cut(s)	41, 722
BbvI	GCAGC	3 cut(s)	438, 460, 603
BccI	CCATC	3 cut(s)	170, 306, 745
BceAI	ACGGC	2 cut(s)	117, 475
BciT130I	CCWGG	1 cut(s)	718
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	329
BglI	GCCNNNNNGGC	1 cut(s)	698
BisI	GCNGC	8 cut(s)	123, 130, 144, 449, 452, 463, 617, 699
BlsI	GCNGC	8 cut(s)	124, 131, 145, 450, 453, 464, 618, 700
Bme1390I	CCNGG	1 cut(s)	718
BmgT120I	GGNCC	2 cut(s)	54, 714
BmiI	GGNNCC	2 cut(s)	685, 756
BmrFI	CCNGG	1 cut(s)	718
BmsI	GCATC	2 cut(s)	348, 354
BpiI	GAAGAC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	741
Bpu10I	CCTNAGC	2 cut(s)	41, 722
BsaJI	CCNNGG	2 cut(s)	693, 716
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	695, 725
Bsc4I	CCNNNNNNNGG	1 cut(s)	723
Bse3DI	GCAATG	2 cut(s)	206, 495
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	693, 716
BseGI	GGATG	2 cut(s)	158, 663
BseLI	CCNNNNNNNGG	1 cut(s)	723
BseMI	GCAATG	2 cut(s)	206, 495
BseMII	CTCAG	3 cut(s)	55, 684, 713
BseRI	GAGGAG	1 cut(s)	696
BseXI	GCAGC	3 cut(s)	438, 460, 603
BshFI	GGCC	5 cut(s)	55, 146, 345, 465, 715
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	723
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	5 cut(s)	55, 146, 345, 465, 715
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	693
BspANI	GGCC	5 cut(s)	55, 146, 345, 465, 715
BspCNI	CTCAG	3 cut(s)	54, 683, 714
BspEI	TCCGGA	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	685, 756
BspMI	ACCTGC	1 cut(s)	329
BsrDI	GCAATG	2 cut(s)	206, 495
BssECI	CCNNGG	2 cut(s)	693, 716
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	693
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	2 cut(s)	309, 625
Bst6I	CTCTTC	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	49, 53, 127
BstDEI	CTNAG	3 cut(s)	41, 670, 722
BstDSI	CCRYGG	1 cut(s)	693
BstF5I	GGATG	2 cut(s)	158, 663
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	716
BstV1I	GCAGC	3 cut(s)	438, 460, 603
BstV2I	GAAGAC	1 cut(s)	449
BstXI	CCANNNNNNTGG	1 cut(s)	694
BsuRI	GGCC	5 cut(s)	55, 146, 345, 465, 715
BtgI	CCRYGG	1 cut(s)	693
BtsCI	GGATG	2 cut(s)	158, 663
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	630, 654
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	3 cut(s)	49, 53, 127
CaiI	CAGNNNCTG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	54, 714
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	292, 424
CviAII	CATG	3 cut(s)	254, 541, 694
CviQI	GTAC	2 cut(s)	292, 424
DdeI	CTNAG	3 cut(s)	41, 670, 722
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	574
EaeI	YGGCCR	2 cut(s)	144, 463
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	2 cut(s)	599, 716
Eco130I	CCWWGG	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	763
EcoT14I	CCWWGG	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	693
FaeI	CATG	3 cut(s)	257, 544, 697
FatI	CATG	3 cut(s)	253, 540, 693
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	8 cut(s)	123, 130, 144, 449, 452, 463, 617, 699
FokI	GGATG	2 cut(s)	145, 670
Fsp4HI	GCNGC	8 cut(s)	123, 130, 144, 449, 452, 463, 617, 699
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	8 cut(s)	123, 130, 144, 449, 452, 463, 617, 699
GsuI	CTGGAG	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	5 cut(s)	55, 146, 345, 465, 715
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	3 cut(s)	257, 544, 697
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	7 cut(s)	194, 215, 377, 470, 482, 587, 727
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	175, 541
Hpy166II	GTNNAC	2 cut(s)	27, 183
Hpy188I	TCNGA	4 cut(s)	400, 475, 516, 673
Hpy188III	TCNNGA	3 cut(s)	108, 601, 758
Hpy8I	GTNNAC	2 cut(s)	27, 183
HpyAV	CCTTC	3 cut(s)	229, 418, 647
HpyCH4III	ACNGT	2 cut(s)	309, 625
HpyCH4V	TGCA	4 cut(s)	4, 211, 367, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	3 cut(s)	41, 670, 722
Hsp92II	CATG	3 cut(s)	257, 544, 697
HspAI	GCGC	1 cut(s)	45
Kpn2I	TCCGGA	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	4 cut(s)	82, 401, 683, 760
Lsp1109I	GCAGC	3 cut(s)	438, 460, 603
LweI	GCATC	2 cut(s)	348, 354
MaeIII	GTNAC	3 cut(s)	6, 134, 494
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	6 cut(s)	157, 275, 340, 348, 454, 760
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	203, 224
MmeI	TCCRAC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	50, 356, 391, 637, 674, 717, 738
MroI	TCCGGA	1 cut(s)	107
MroXI	GAANNNNTTC	2 cut(s)	23, 115
MseI	TTAA	2 cut(s)	573, 663
MspA1I	CMGCKG	2 cut(s)	80, 451
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	718
MvaI	CCWGG	1 cut(s)	718
MwoI	GCNNNNNNNGC	1 cut(s)	698
NcoI	CCATGG	1 cut(s)	693
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	257, 544, 697
NlaIV	GGNNCC	2 cut(s)	685, 756
NmuCI	GTSAC	2 cut(s)	6, 134
PaqCI	CACCTGC	1 cut(s)	329
PdmI	GAANNNNTTC	2 cut(s)	23, 115
PfeI	GAWTC	5 cut(s)	377, 470, 482, 587, 727
PkrI	GCNGC	8 cut(s)	124, 131, 145, 450, 453, 464, 618, 700
PleI	GAGTC	2 cut(s)	202, 223
PpsI	GAGTC	2 cut(s)	202, 223
Psp6I	CCWGG	1 cut(s)	716
PspGI	CCWGG	1 cut(s)	716
PspN4I	GGNNCC	2 cut(s)	685, 756
PspPI	GGNCC	2 cut(s)	54, 714
PstNI	CAGNNNCTG	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	2 cut(s)	293, 425
RsaNI	GTAC	2 cut(s)	292, 424
SaqAI	TTAA	2 cut(s)	573, 663
SatI	GCNGC	8 cut(s)	123, 130, 144, 449, 452, 463, 617, 699
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	2 cut(s)	54, 714
SchI	GAGTC	2 cut(s)	203, 224
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	13, 286, 323, 398, 453, 480, 618
SfaNI	GCATC	2 cut(s)	348, 354
Sse9I	AATT	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	716
StyI	CCWWGG	1 cut(s)	693
TaaI	ACNGT	2 cut(s)	309, 625
TasI	AATT	1 cut(s)	32
TauI	GCSGC	5 cut(s)	125, 132, 146, 465, 701
TfiI	GAWTC	5 cut(s)	377, 470, 482, 587, 727
Tru1I	TTAA	2 cut(s)	573, 663
Tru9I	TTAA	2 cut(s)	573, 663
TscAI	CASTG	2 cut(s)	630, 654
TseFI	GTSAC	2 cut(s)	6, 134
TseI	GCWGC	3 cut(s)	448, 451, 616
Tsp45I	GTSAC	2 cut(s)	6, 134
TspDTI	ATGAA	2 cut(s)	144, 270
TspRI	CASTG	2 cut(s)	630, 654
XmnI	GAANNNNTTC	2 cut(s)	23, 115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.