Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001198.1

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Forward (+)

52913 .. 53842

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001198.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ctgaaagaggtcacagaagtatgcctcagcggctgctgctcctcccccttattcaagtccacagtgattcacgacaccgcctcaaagtctggaagcacttctgcagcttgccgtcgtgactttgcagccaaaacttcatcatccatcttcccaaacacccagttcaccaaccatgagtctataccaaccttgcaaaagtccttctctgacttcaccaaggcttatccgagatactatgagacagcagaagtggaccagatacgagctcaggagtactaccatctcacacaatccaatcatacctgccttgattatataggcctcggtctcttctcgtcttcccagctgcacaaacaggaatcatcaaaacaaatggtaccatctacatccacttctcgactgccatcacctccccgaaattcagattaccctttctttagtatatcctacaagactgggaatctcaaaacggagcttcttcatggcggccaagaatcagagttgaaatctgcaatgagaagaagaatcatgagttttcttaacatattagaaactgattacagcatggttttcaccgccaaaagaatattagctttcaaactggtagccgaatcttacccgtacaaaactagtagaaagcttcggtcagtttatgactatgagagtgaggtagtggaatcaatgattaacagttcggaaaagagaggcgctcaggtcatgtcagcagagttttcatggccaaggctgaggattcagtcggaaaaattgaggaagatgatagggagtaagaagaagaagaaaaagaaaagaggcctttttgtcttcccagtacattgctacattctagggttacaggtgctaaaattcatagtcatagtgaaaaagcttgaaattgaagcaacaatggtggtgaacgaaaccctaagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

309

Amino Acids

35.18

Weight (kDa)

9.52

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	376
AciI	CCGC	4 cut(s)	30, 78, 486, 576
AcoI	YGGCCR	2 cut(s)	487, 737
AcsI	RAATTY	2 cut(s)	418, 863
AfaI	GTAC	4 cut(s)	275, 378, 623, 831
AgsI	TTSAA	5 cut(s)	55, 505, 598, 890, 896
AhlI	ACTAGT	1 cut(s)	629
AluBI	AGCT	8 cut(s)	107, 266, 346, 475, 593, 640, 886, 927
AluI	AGCT	8 cut(s)	107, 266, 346, 475, 593, 640, 886, 927
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	233, 332
AlwNI	CAGNNNCTG	1 cut(s)	33
AoxI	GGCC	4 cut(s)	319, 487, 737, 811
ApeKI	GCWGC	5 cut(s)	33, 36, 104, 125, 346
ApoI	RAATTY	2 cut(s)	418, 863
Asp700I	GAANNNNTTC	1 cut(s)	97
Asp718I	GGTACC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	710
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	5 cut(s)	157, 205, 399, 565, 922
AvaII	GGWCC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	2 cut(s)	330, 814
Bbv12I	GWGCWC	1 cut(s)	268
BbvCI	CCTCAGC	2 cut(s)	26, 746
BbvI	GCAGC	5 cut(s)	20, 23, 116, 137, 333
BccI	CCATC	4 cut(s)	152, 288, 388, 412
BceAI	ACGGC	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	233, 332
BcuI	ACTAGT	1 cut(s)	629
BfaI	CTAG	3 cut(s)	630, 845, 928
BfmI	CTRYAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	711
BfuAI	ACCTGC	1 cut(s)	311
BglI	GCCNNNNNGGC	1 cut(s)	30
BisI	GCNGC	7 cut(s)	31, 34, 37, 105, 126, 347, 487
BlsI	GCNGC	7 cut(s)	32, 35, 38, 106, 127, 348, 488
BmcAI	AGTACT	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	378
BmrI	ACTGGG	3 cut(s)	154, 465, 821
BmuI	ACTGGG	3 cut(s)	154, 465, 821
BpiI	GAAGAC	2 cut(s)	330, 814
BplI	GAGNNNNNCTC	2 cut(s)	694, 726
Bpu10I	CCTNAGC	5 cut(s)	26, 267, 711, 746, 923
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	216, 322, 740
Bse1I	ACTGG	4 cut(s)	160, 460, 606, 827
Bse3DI	GCAATG	2 cut(s)	519, 832
BseDI	CCNNGG	3 cut(s)	216, 322, 740
BseGI	GGATG	2 cut(s)	140, 386
BseMI	GCAATG	2 cut(s)	519, 832
BseMII	CTCAG	4 cut(s)	40, 281, 725, 737
BseNI	ACTGG	4 cut(s)	160, 460, 606, 827
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	5 cut(s)	20, 23, 116, 137, 333
BseYI	CCCAGC	1 cut(s)	342
BsgI	GTGCAG	1 cut(s)	332
BshFI	GGCC	4 cut(s)	321, 489, 739, 813
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	268
BsmAI	GTCTC	2 cut(s)	233, 332
BsnI	GGCC	4 cut(s)	321, 489, 739, 813
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	268
BspACI	CCGC	4 cut(s)	30, 78, 486, 576
BspANI	GGCC	4 cut(s)	321, 489, 739, 813
BspCNI	CTCAG	4 cut(s)	39, 280, 724, 738
BspHI	TCATGA	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	378
BspMAI	CTGCAG	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	332
BsrDI	GCAATG	2 cut(s)	519, 832
BsrI	ACTGG	4 cut(s)	160, 460, 606, 827
BssECI	CCNNGG	3 cut(s)	216, 322, 740
BssT1I	CCWWGG	2 cut(s)	216, 740
Bst4CI	ACNGT	2 cut(s)	64, 692
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	5 cut(s)	26, 267, 711, 746, 923
BstF5I	GGATG	2 cut(s)	140, 386
BstH2I	RGCGCY	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	710
BstMAI	GTCTC	2 cut(s)	233, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 36
BstSFI	CTRYAG	1 cut(s)	102
BstV1I	GCAGC	5 cut(s)	20, 23, 116, 137, 333
BstV2I	GAAGAC	2 cut(s)	330, 814
BsuRI	GGCC	4 cut(s)	321, 489, 739, 813
BtsCI	GGATG	2 cut(s)	140, 386
BtsIMutI	CAGTG	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	33
CciI	TCATGA	1 cut(s)	528
CfoI	GCGC	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	4 cut(s)	274, 377, 622, 830
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
CviAII	CATG	6 cut(s)	173, 482, 529, 565, 718, 735
CviQI	GTAC	4 cut(s)	274, 377, 622, 830
DdeI	CTNAG	5 cut(s)	26, 267, 711, 746, 923
EaeI	YGGCCR	2 cut(s)	487, 737
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Ecl136II	GAGCTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	216, 740
Eco147I	AGGCCT	2 cut(s)	321, 813
Eco24I	GRGCYC	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	216, 740
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	216, 740
FaeI	CATG	6 cut(s)	176, 485, 532, 568, 721, 738
FatI	CATG	6 cut(s)	172, 481, 528, 564, 717, 734
Fnu4HI	GCNGC	7 cut(s)	31, 34, 37, 105, 126, 347, 487
FokI	GGATG	2 cut(s)	127, 373
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	7 cut(s)	31, 34, 37, 105, 126, 347, 487
FspBI	CTAG	3 cut(s)	630, 845, 928
GlaI	GCGC	1 cut(s)	709
GluI	GCNGC	7 cut(s)	31, 34, 37, 105, 126, 347, 487
GsaI	CCCAGC	1 cut(s)	346
HaeII	RGCGCY	1 cut(s)	711
HaeIII	GGCC	4 cut(s)	321, 489, 739, 813
HhaI	GCGC	1 cut(s)	710
Hin1II	CATG	6 cut(s)	176, 485, 532, 568, 721, 738
Hin6I	GCGC	1 cut(s)	708
HinP1I	GCGC	1 cut(s)	708
HindIII	AAGCTT	2 cut(s)	638, 884
HinfI	GANTC	9 cut(s)	67, 176, 359, 460, 494, 525, 611, 677, 751
HphI	GGTGA	5 cut(s)	157, 205, 399, 565, 922
Hpy166II	GTNNAC	4 cut(s)	60, 165, 253, 913
Hpy188I	TCNGA	6 cut(s)	208, 228, 424, 499, 697, 760
Hpy188III	TCNNGA	6 cut(s)	71, 90, 116, 269, 396, 529
Hpy8I	GTNNAC	4 cut(s)	60, 165, 253, 913
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	64, 692
HpyCH4V	TGCA	5 cut(s)	104, 125, 193, 349, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 36
HpyF3I	CTNAG	5 cut(s)	26, 267, 711, 746, 923
Hsp92II	CATG	6 cut(s)	176, 485, 532, 568, 721, 738
HspAI	GCGC	1 cut(s)	708
KpnI	GGTACC	1 cut(s)	380
LmnI	GCTCC	2 cut(s)	44, 472
Lsp1109I	GCAGC	5 cut(s)	20, 23, 116, 137, 333
MaeI	CTAG	3 cut(s)	630, 845, 928
MaeIII	GTNAC	3 cut(s)	10, 116, 849
MhlI	GDGCHC	1 cut(s)	268
MlsI	TGGCCA	1 cut(s)	739
MluCI	AATT	4 cut(s)	418, 764, 863, 891
MluNI	TGGCCA	1 cut(s)	739
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	738
Mox20I	TGGCCA	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	739
MseI	TTAA	2 cut(s)	540, 687
Msp20I	TGGCCA	1 cut(s)	739
MspA1I	CMGCKG	2 cut(s)	30, 346
MwoI	GCNNNNNNNGC	2 cut(s)	30, 36
NlaIII	CATG	6 cut(s)	176, 485, 532, 568, 721, 738
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	2 cut(s)	10, 116
PagI	TCATGA	1 cut(s)	528
PceI	AGGCCT	2 cut(s)	321, 813
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	8 cut(s)	67, 359, 460, 494, 525, 611, 677, 751
PkrI	GCNGC	7 cut(s)	32, 35, 38, 106, 127, 348, 488
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	4 cut(s)	275, 378, 623, 831
RsaNI	GTAC	4 cut(s)	274, 377, 622, 830
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	540, 687
SatI	GCNGC	7 cut(s)	31, 34, 37, 105, 126, 347, 487
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	253
SpeI	ACTAGT	1 cut(s)	629
Sse9I	AATT	4 cut(s)	418, 764, 863, 891
SseBI	AGGCCT	2 cut(s)	321, 813
SsiI	CCGC	4 cut(s)	30, 78, 486, 576
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	3 cut(s)	630, 845, 928
SstI	GAGCTC	1 cut(s)	268
StuI	AGGCCT	2 cut(s)	321, 813
StyI	CCWWGG	2 cut(s)	216, 740
TaaI	ACNGT	2 cut(s)	64, 692
TaqI	TCGA	1 cut(s)	397
TaqII	GACCGA	2 cut(s)	314, 633
TasI	AATT	4 cut(s)	418, 764, 863, 891
TatI	WGTACW	2 cut(s)	273, 829
TauI	GCSGC	2 cut(s)	33, 489
TfiI	GAWTC	8 cut(s)	67, 359, 460, 494, 525, 611, 677, 751
Tru1I	TTAA	2 cut(s)	540, 687
Tru9I	TTAA	2 cut(s)	540, 687
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	10, 116
TseI	GCWGC	5 cut(s)	33, 36, 104, 125, 346
Tsp45I	GTSAC	2 cut(s)	10, 116
TspDTI	ATGAA	4 cut(s)	126, 470, 723, 856
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	418, 863
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	3 cut(s)	630, 845, 928
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.