Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Reverse (-)

50983378 .. 50985677

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGTTGCTGTGCAGCTCCTCCTCCTGCTCCTCCTCAAAAGCAGAAATCGTCGACAACAAACAACAAAGTCACCATTTTCAGGTATGACTTCACTCTTGCAACAGCTGCTTCCCTCTGCTGCTACCCCAACTCCCAATTCACAAACCATGAGTCACTCCCTTCATTACATGAATCATATGCTTATTTCATTAAAGCATACCCTCAATACTCCCAAACTGATCAAGCAGACTATATCAGAGCCCATGAGTATCACCATCTCAACCTCTCCAAACATGTCTGCCTTGATTACATTGGGCACGGCCTCTTCTCATTCTCTCAGCTCCAAAAGCATTACCAAACACCTTCAATTGCTTCATCATCATCATCATCTCCTCCTCCTCCTCCTCCCCCCTACTGTTCCTCAGTCACTATATGTCCCGGAACCATTCTTTTTCGATATTTCGTACAAGTCAGTGAACTTGCATACCCAAGTATTGTATGGGGGACAAGAATCAGAATTTGAATTTGAAATGAAGAAAAGAATCATGAGTTACATGAACATCTCAGAAGTTGATTACACCTTGATTTTAACTGCAAATCAATCGTCAGCTTTCAAACTTCTAGCAGACTCTTATCCCTTCCAGAACAATCCCAACCTATTGAGTGTTTATGACTACAAGAATGAGGCTGTGGATGTGATGGCAGAGAGCTGTAAGAAAAGAAGAGGACGAGTTATGTCTGCCGAGTTCTCATGGCCTAACATGAGAATTCATACAAGTAAATTGGGGAGAAAGATTGGGAAGAGGAAGAAGATCAGGAAGCGGCCTGGATTGTTCGTTTTCCCACTTCAATCAAGACTCACCGGTGTTCGATACTCGTATCAGTGGATGAGCATAGCGCAGGAAAATGGGTGGCATGTGTTGCTTGATGCATGTGCATTGGGGCCTAAGGACATGGAGACATTAGGCCTCTCTTTGTTTAAGCCTGACTTTCTAATTTGCTCTTTCTTCAAAGTTTTTGGGGAAAATCCATCCGGCTTTGGTTGCTTGTTTGTCAAGAAATCAAGCGCTTCGGTGTTGAAGGATTCCTCAGTTGCTTCGAGCATAGGAATCGTGAGCCTCGTCGCATCTTCAATACCATCTCAATTAGTAGTAGAGAAGTCAAGTGACAAAGAAGTCTCAATAAAGCAGAAGGCACACACATTTTCGGAAATTGAGGAGTTAGAGAGAGATTCTGAGTCTGACCAATCAGAAAATTGGGAGAGTTATGAAAGTGGCAAGAGCTCAGGGATTGAATGTAGGGGTTTGGATCATGCAGATGAATTAGGCCTGGTACTAATTAGTAGGAGAGCAAGGTACCTGATCAACTGGTTAGTGAATGCATTGATGAGTCTTCGACATCCACATTACTCCGAATATGGGCATCAATTGGTCAAAATCTACGGCCCCAAGATTAAATTCGACAGAGGACCAAGCCTGGCATTCAATGTGTTCGATTGGAAAGGGAGAAGATCGAGCCTTCAATTGTCCAGAAGCTTGCTGATCGACACAACATTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

513

Amino Acids

58.01

Weight (kDa)

9.49

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1154
Acc65I	GGTACC	1 cut(s)	1335
AccB1I	GGYRCC	1 cut(s)	1335
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	1 cut(s)	802
AclWI	GGATC	1 cut(s)	1296
AcsI	RAATTY	4 cut(s)	497, 503, 747, 1436
AfaI	GTAC	3 cut(s)	446, 1314, 1337
AfeI	AGCGCT	1 cut(s)	1048
AfiI	CCNNNNNNNGG	2 cut(s)	80, 1398
AflIII	ACRYGT	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	842
AjnI	CCWGG	3 cut(s)	805, 1308, 1455
AjuI	GAANNNNNNNTTGG	4 cut(s)	121, 153, 1421, 1453
AluBI	AGCT	7 cut(s)	16, 106, 321, 590, 690, 1263, 1515
AluI	AGCT	7 cut(s)	16, 106, 321, 590, 690, 1263, 1515
Alw21I	GWGCWC	1 cut(s)	1265
Alw26I	GTCTC	2 cut(s)	932, 1162
AlwI	GGATC	1 cut(s)	1296
Aor51HI	AGCGCT	1 cut(s)	1048
AoxI	GGCC	7 cut(s)	300, 734, 803, 923, 946, 1306, 1423
ApeKI	GCWGC	3 cut(s)	13, 106, 119
ApoI	RAATTY	4 cut(s)	497, 503, 747, 1436
ArsI	GACNNNNNNTTYG	4 cut(s)	136, 168, 569, 601
AsiGI	ACCGGT	1 cut(s)	842
Asp718I	GGTACC	1 cut(s)	1335
AspLEI	GCGC	2 cut(s)	880, 1049
AspS9I	GGNCC	3 cut(s)	923, 1424, 1448
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	3 cut(s)	63, 244, 832
AvaII	GGWCC	1 cut(s)	1448
AxyI	CCTNAGG	1 cut(s)	927
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	1335
BanII	GRGCYC	2 cut(s)	243, 1265
BbsI	GAAGAC	1 cut(s)	1364
Bbv12I	GWGCWC	1 cut(s)	1265
BbvI	GCAGC	3 cut(s)	25, 93, 106
BccI	CCATC	4 cut(s)	263, 673, 1018, 1126
BceAI	ACGGC	2 cut(s)	315, 1438
BcgI	CGANNNNNNTGC	4 cut(s)	564, 598, 1072, 1106
BciT130I	CCWGG	3 cut(s)	807, 1310, 1457
BclI	TGATCA	2 cut(s)	219, 1341
BcnI	CCSGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	932, 1162
BfaI	CTAG	1 cut(s)	602
BfoI	RGCGCY	1 cut(s)	1050
BisI	GCNGC	4 cut(s)	14, 107, 120, 803
BlsI	GCNGC	4 cut(s)	15, 108, 121, 804
Bme1390I	CCNGG	4 cut(s)	419, 807, 1310, 1457
Bme18I	GGWCC	1 cut(s)	1448
BmgT120I	GGNCC	3 cut(s)	923, 1424, 1448
BmiI	GGNNCC	4 cut(s)	423, 924, 1337, 1426
BmrFI	CCNGG	4 cut(s)	419, 807, 1310, 1457
BmsI	GCATC	3 cut(s)	898, 1115, 1411
BpiI	GAAGAC	1 cut(s)	1364
Bpu10I	CCTNAGC	1 cut(s)	1264
BpuMI	CCSGG	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 1398
Bse118I	RCCGGY	1 cut(s)	842
Bse1I	ACTGG	1 cut(s)	1352
Bse21I	CCTNAGG	1 cut(s)	927
BseBI	CCWGG	3 cut(s)	807, 1310, 1457
BseGI	GGATG	4 cut(s)	679, 873, 1010, 1378
BseLI	CCNNNNNNNGG	2 cut(s)	80, 1398
BseMII	CTCAG	6 cut(s)	331, 416, 558, 1083, 1206, 1278
BseNI	ACTGG	1 cut(s)	1352
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	3 cut(s)	25, 93, 106
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	7 cut(s)	302, 736, 805, 925, 948, 1308, 1425
BshNI	GGYRCC	1 cut(s)	1335
BshTI	ACCGGT	1 cut(s)	842
BsiHKAI	GWGCWC	1 cut(s)	1265
BsiSI	CCGG	3 cut(s)	419, 843, 1014
BslFI	GGGAC	2 cut(s)	401, 498
BslI	CCNNNNNNNGG	2 cut(s)	80, 1398
BsmAI	GTCTC	2 cut(s)	932, 1162
BsmFI	GGGAC	2 cut(s)	401, 498
BsmI	GAATGC	2 cut(s)	1363, 1460
BsnI	GGCC	7 cut(s)	302, 736, 805, 925, 948, 1308, 1425
Bsp1286I	GDGCHC	3 cut(s)	243, 299, 1265
Bsp143I	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
BspACI	CCGC	1 cut(s)	802
BspANI	GGCC	7 cut(s)	302, 736, 805, 925, 948, 1308, 1425
BspCNI	CTCAG	6 cut(s)	330, 415, 557, 1082, 1207, 1277
BspHI	TCATGA	1 cut(s)	525
BspLI	GGNNCC	4 cut(s)	423, 924, 1337, 1426
BspPI	GGATC	1 cut(s)	1296
BspT107I	GGYRCC	1 cut(s)	1335
BsrFI	RCCGGY	1 cut(s)	842
BsrI	ACTGG	1 cut(s)	1352
BssAI	RCCGGY	1 cut(s)	842
BssMI	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
Bst2UI	CCWGG	3 cut(s)	807, 1310, 1457
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	3 cut(s)	310, 697, 776
BstAPI	GCANNNNNTGC	2 cut(s)	106, 901
BstC8I	GCNNGC	1 cut(s)	1517
BstDEI	CTNAG	7 cut(s)	317, 402, 544, 927, 1069, 1215, 1264
BstF5I	GGATG	4 cut(s)	679, 873, 1010, 1378
BstH2I	RGCGCY	1 cut(s)	1050
BstHHI	GCGC	2 cut(s)	880, 1049
BstKTI	GATC	6 cut(s)	222, 795, 1291, 1344, 1493, 1524
BstMAI	GTCTC	2 cut(s)	932, 1162
BstMBI	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 327, 901, 1023
BstNI	CCWGG	3 cut(s)	807, 1310, 1457
BstNSI	RCATGY	3 cut(s)	277, 899, 915
BstSCI	CCNGG	4 cut(s)	417, 805, 1308, 1455
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	25, 93, 106
BstV2I	GAAGAC	1 cut(s)	1364
Bsu36I	CCTNAGG	1 cut(s)	927
BsuRI	GGCC	7 cut(s)	302, 736, 805, 925, 948, 1308, 1425
BtsCI	GGATG	4 cut(s)	679, 873, 1010, 1378
BtsIMutI	CAGTG	2 cut(s)	459, 869
Cac8I	GCNNGC	1 cut(s)	1517
CciI	TCATGA	1 cut(s)	525
CfoI	GCGC	2 cut(s)	880, 1049
Cfr10I	RCCGGY	1 cut(s)	842
Cfr13I	GGNCC	3 cut(s)	923, 1424, 1448
Csp6I	GTAC	3 cut(s)	445, 1313, 1336
CspAI	ACCGGT	1 cut(s)	842
CviQI	GTAC	3 cut(s)	445, 1313, 1336
DdeI	CTNAG	7 cut(s)	317, 402, 544, 927, 1069, 1215, 1264
DpnI	GATC	6 cut(s)	221, 794, 1290, 1343, 1492, 1523
DpnII	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
DrdI	GACNNNNNNGTC	1 cut(s)	1154
DseDI	GACNNNNNNGTC	1 cut(s)	1154
Eam1104I	CTCTTC	3 cut(s)	310, 697, 776
EarI	CTCTTC	3 cut(s)	310, 697, 776
Ecl136II	GAGCTC	1 cut(s)	1263
Eco147I	AGGCCT	2 cut(s)	948, 1308
Eco24I	GRGCYC	2 cut(s)	243, 1265
Eco47I	GGWCC	1 cut(s)	1448
Eco47III	AGCGCT	1 cut(s)	1048
Eco53kI	GAGCTC	1 cut(s)	1263
Eco81I	CCTNAGG	1 cut(s)	927
EcoICRI	GAGCTC	1 cut(s)	1263
EcoO109I	RGGNCCY	1 cut(s)	923
EcoRI	GAATTC	1 cut(s)	747
EcoRII	CCWGG	3 cut(s)	805, 1308, 1455
EcoT22I	ATGCAT	2 cut(s)	913, 1363
EcoT38I	GRGCYC	2 cut(s)	243, 1265
FalI	AAGNNNNNCTT	2 cut(s)	953, 985
FaqI	GGGAC	2 cut(s)	401, 498
FauNDI	CATATG	1 cut(s)	177
FbaI	TGATCA	2 cut(s)	219, 1341
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	14, 107, 120, 803
FokI	GGATG	4 cut(s)	686, 880, 997, 1365
FriOI	GRGCYC	2 cut(s)	243, 1265
Fsp4HI	GCNGC	4 cut(s)	14, 107, 120, 803
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	2 cut(s)	879, 1048
GluI	GCNGC	4 cut(s)	14, 107, 120, 803
HaeII	RGCGCY	1 cut(s)	1050
HaeIII	GGCC	7 cut(s)	302, 736, 805, 925, 948, 1308, 1425
HapII	CCGG	3 cut(s)	419, 843, 1014
HhaI	GCGC	2 cut(s)	880, 1049
Hin6I	GCGC	2 cut(s)	878, 1047
HinP1I	GCGC	2 cut(s)	878, 1047
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	1513
HpaII	CCGG	3 cut(s)	419, 843, 1014
HphI	GGTGA	3 cut(s)	63, 244, 832
Hpy166II	GTNNAC	2 cut(s)	53, 457
Hpy188I	TCNGA	8 cut(s)	238, 496, 547, 1189, 1216, 1222, 1231, 1393
Hpy188III	TCNNGA	7 cut(s)	526, 622, 796, 834, 1036, 1093, 1509
Hpy8I	GTNNAC	2 cut(s)	53, 457
Hpy99I	CGWCG	2 cut(s)	54, 1106
HpyAV	CCTTC	6 cut(s)	170, 353, 628, 1054, 1165, 1508
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	8 cut(s)	13, 100, 463, 575, 911, 917, 1295, 1361
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 327, 901, 1023
HpyF3I	CTNAG	7 cut(s)	317, 402, 544, 927, 1069, 1215, 1264
HspAI	GCGC	2 cut(s)	878, 1047
KpnI	GGTACC	1 cut(s)	1339
Ksp22I	TGATCA	2 cut(s)	219, 1341
Kzo9I	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
LmnI	GCTCC	3 cut(s)	21, 33, 326
Lsp1109I	GCAGC	3 cut(s)	25, 93, 106
LweI	GCATC	3 cut(s)	898, 1115, 1411
MaeI	CTAG	1 cut(s)	602
MaeIII	GTNAC	5 cut(s)	69, 152, 405, 530, 1145
MalI	GATC	6 cut(s)	221, 794, 1290, 1343, 1492, 1523
MboI	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
MfeI	CAATTG	3 cut(s)	347, 1406, 1502
MhlI	GDGCHC	3 cut(s)	243, 299, 1265
MlyI	GAGTC	5 cut(s)	160, 602, 831, 1226, 1378
Mph1103I	ATGCAT	2 cut(s)	913, 1363
MseI	TTAA	4 cut(s)	191, 569, 960, 1434
MslI	CAYNNNNRTG	1 cut(s)	1296
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	3 cut(s)	419, 843, 1014
MspR9I	CCNGG	4 cut(s)	419, 807, 1310, 1457
MunI	CAATTG	3 cut(s)	347, 1406, 1502
Mva1269I	GAATGC	2 cut(s)	1363, 1460
MvaI	CCWGG	3 cut(s)	807, 1310, 1457
MwoI	GCNNNNNNNGC	4 cut(s)	106, 327, 901, 1023
NciI	CCSGG	1 cut(s)	419
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
NlaIV	GGNNCC	4 cut(s)	423, 924, 1337, 1426
NmeAIII	GCCGAG	1 cut(s)	748
NmuCI	GTSAC	4 cut(s)	69, 152, 405, 1145
NsiI	ATGCAT	2 cut(s)	913, 1363
NspI	RCATGY	3 cut(s)	277, 899, 915
PagI	TCATGA	1 cut(s)	525
PceI	AGGCCT	2 cut(s)	948, 1308
PciI	ACATGT	1 cut(s)	273
PcsI	WCGNNNNNNNCGW	1 cut(s)	1098
PctI	GAATGC	2 cut(s)	1363, 1460
PfeI	GAWTC	6 cut(s)	172, 491, 522, 1064, 1089, 1211
PfoI	TCCNGGA	1 cut(s)	417
PinAI	ACCGGT	1 cut(s)	842
PkrI	GCNGC	4 cut(s)	15, 108, 121, 804
PleI	GAGTC	5 cut(s)	159, 602, 831, 1225, 1377
PpsI	GAGTC	5 cut(s)	159, 602, 831, 1225, 1377
PscI	ACATGT	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	1265
Psp6I	CCWGG	3 cut(s)	805, 1308, 1455
PspGI	CCWGG	3 cut(s)	805, 1308, 1455
PspN4I	GGNNCC	4 cut(s)	423, 924, 1337, 1426
PspPI	GGNCC	3 cut(s)	923, 1424, 1448
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	3 cut(s)	446, 1314, 1337
RsaNI	GTAC	3 cut(s)	445, 1313, 1336
RseI	CAYNNNNRTG	1 cut(s)	1296
SacI	GAGCTC	1 cut(s)	1265
SalI	GTCGAC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	191, 569, 960, 1434
SatI	GCNGC	4 cut(s)	14, 107, 120, 803
Sau3AI	GATC	6 cut(s)	219, 792, 1288, 1341, 1490, 1521
Sau96I	GGNCC	3 cut(s)	923, 1424, 1448
SchI	GAGTC	5 cut(s)	160, 602, 831, 1226, 1378
ScrFI	CCNGG	4 cut(s)	419, 807, 1310, 1457
SduI	GDGCHC	3 cut(s)	243, 299, 1265
SfaNI	GCATC	3 cut(s)	898, 1115, 1411
SgrAI	CRCCGGYG	1 cut(s)	842
SinI	GGWCC	1 cut(s)	1448
SmiMI	CAYNNNNRTG	1 cut(s)	1296
SseBI	AGGCCT	2 cut(s)	948, 1308
SsiI	CCGC	1 cut(s)	802
SspMI	CTAG	1 cut(s)	602
SstI	GAGCTC	1 cut(s)	1265
StuI	AGGCCT	2 cut(s)	948, 1308
StyD4I	CCNGG	4 cut(s)	417, 805, 1308, 1455
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	9 cut(s)	52, 435, 850, 1079, 1375, 1440, 1473, 1493, 1524
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	6 cut(s)	172, 491, 522, 1064, 1089, 1211
Tru1I	TTAA	4 cut(s)	191, 569, 960, 1434
Tru9I	TTAA	4 cut(s)	191, 569, 960, 1434
TscAI	CASTG	2 cut(s)	459, 869
TseFI	GTSAC	4 cut(s)	69, 152, 405, 1145
TseI	GCWGC	3 cut(s)	13, 106, 119
Tsp45I	GTSAC	4 cut(s)	69, 152, 405, 1145
TspDTI	ATGAA	9 cut(s)	152, 177, 185, 344, 527, 551, 740, 1263, 1314
TspRI	CASTG	2 cut(s)	459, 869
VpaK11BI	GGWCC	1 cut(s)	1448
XapI	RAATTY	4 cut(s)	497, 503, 747, 1436
XceI	RCATGY	3 cut(s)	277, 899, 915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	602
Zsp2I	ATGCAT	2 cut(s)	913, 1363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.