Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Reverse (-)

65358163 .. 65359212

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG383700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGACTATAGCACAGGAGAATGGGTGGCACGTCTTGGTTGATGCTTGTGCCTTAGGACCAAAGGATATGGATAGCTTCGGCCTCTCTCTTTTTCAGCCAGATTTCCTCGTTTCTTCTTTCTACAAGGTTTATGGGGAAAACCCATCTGGCTTTGCATGCCTCTTTGTCAAGAAATCAGCTATTCCAGTGCTGGAAGCATCTACAAGTACAGGGATTGTAAACCTTGTCCCAGCACAGGAGTTTCTTCAAATAGGAGGGGACTCCTCTGACACGGAAGTTGAAGAGATATCTAGACTTCGTTTGCAAGAAGATATATTGGATATATCACGTTCTTTCTCTGGTCTGATATCAAATCACAGTCATCGGGGAACACCTACGAAAAGGTTAGAACAAGGAGAACTCTCTGACAGTGCAGAAGATGGTGCAAACTCAGAAGAACTGGAAATTTCAGGAGAATCTGAAAGGCTTGCCAAGAGCAGCAAAAATGGGAATCAAGAGGTTGTATGCAGGAGCTTGGATCAAGTGGATTCTCTGGGGTTAATACTGATCACTAACAGGGCAAGGTACCTGATAAATTGGTTGGTGAGTTCATTGAGAAAGCTTAAGCATCCTAACTCAGAGGGAGTTCCTTTGGTCAGAATCTACGGACCAAAGATCAAATATGACCGGGGACCAGCTCTAGCATTCAATGTATTTGATTGGAAGGGAGAAAAGGTTGAGCCTGTTCTTGTCCAGAAACTTGCCGATAGAAACAACATTTCTCTTAGCTATGGATTTTTACACCATATCTGGTTCTCAGATAAGTATACTGAAGAGAGAGGAAGAGTCCTAGAGAGAAGAGATAGTGGAGCAAAGGGAATGGCTGCAAACAAGTTGAAGGCAAAATCTGGTCCAGGAATAAGTGTGGTTACAGCTGCACTCTGGTTCGTATCGAATTTTGAAGACATATACAGGCTTTGGGCTTTTGTTGCACAGTTCCTAGATGCAGATTTTGTGGAGAAGGAGAGATGGAGATATACAGCTCTTAATCAGAAAACCATTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

349

Amino Acids

39.03

Weight (kDa)

5.67

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	564
AccI	GTMKAC	1 cut(s)	806
AclWI	GGATC	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	444, 934
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	2 cut(s)	208, 566
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflII	CTTAAG	1 cut(s)	602
AgsI	TTSAA	6 cut(s)	248, 281, 688, 877, 941, 1043
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	892
AluBI	AGCT	8 cut(s)	75, 179, 513, 601, 677, 768, 914, 1022
AluI	AGCT	8 cut(s)	75, 179, 513, 601, 677, 768, 914, 1022
AlwI	GGATC	1 cut(s)	525
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	3 cut(s)	477, 863, 914
ApoI	RAATTY	2 cut(s)	444, 934
Asp718I	GGTACC	1 cut(s)	564
AspS9I	GGNCC	4 cut(s)	56, 647, 671, 890
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	595
AvaII	GGWCC	4 cut(s)	56, 647, 671, 890
AxyI	CCTNAGG	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	948
BbvI	GCAGC	3 cut(s)	489, 850, 901
BccI	CCATC	3 cut(s)	151, 413, 1002
BciT130I	CCWGG	1 cut(s)	894
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	668
BfaI	CTAG	4 cut(s)	291, 680, 830, 980
BfmI	CTRYAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	602
BisI	GCNGC	3 cut(s)	478, 864, 915
BlsI	GCNGC	3 cut(s)	479, 865, 916
Bme1390I	CCNGG	2 cut(s)	668, 894
Bme18I	GGWCC	4 cut(s)	56, 647, 671, 890
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	4 cut(s)	56, 647, 671, 890
BmiI	GGNNCC	2 cut(s)	566, 672
BmrFI	CCNGG	2 cut(s)	668, 894
BmsI	GCATC	4 cut(s)	31, 206, 616, 973
BpiI	GAAGAC	1 cut(s)	948
BpuMI	CCSGG	1 cut(s)	668
BsaJI	CCNNGG	1 cut(s)	667
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 699, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	2 cut(s)	185, 444
Bse21I	CCTNAGG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	894
BseDI	CCNNGG	1 cut(s)	667
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	3 cut(s)	444, 630, 810
BseNI	ACTGG	2 cut(s)	185, 444
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	489, 850, 901
BseYI	CCCAGC	1 cut(s)	229
BsgI	GTGCAG	2 cut(s)	432, 900
BshFI	GGCC	1 cut(s)	81
BshNI	GGYRCC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	667
BslFI	GGGAC	3 cut(s)	212, 272, 684
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	212, 272, 684
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	517, 546, 654
BspANI	GGCC	1 cut(s)	81
BspCNI	CTCAG	3 cut(s)	443, 629, 809
BspLI	GGNNCC	2 cut(s)	566, 672
BspPI	GGATC	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	564
BspTI	CTTAAG	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	185, 444
BssECI	CCNNGG	1 cut(s)	667
BssMI	GATC	3 cut(s)	517, 546, 654
BssNAI	GTATAC	1 cut(s)	807
Bst1107I	GTATAC	1 cut(s)	807
Bst2UI	CCWGG	1 cut(s)	894
Bst4CI	ACNGT	3 cut(s)	359, 410, 975
Bst6I	CTCTTC	4 cut(s)	276, 807, 817, 832
BstAFI	CTTAAG	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	157, 468
BstDEI	CTNAG	5 cut(s)	52, 430, 616, 764, 796
BstF5I	GGATG	1 cut(s)	607
BstKTI	GATC	3 cut(s)	520, 549, 657
BstMBI	GATC	3 cut(s)	517, 546, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	156, 968
BstNI	CCWGG	1 cut(s)	894
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	666, 892
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	489, 850, 901
BstV2I	GAAGAC	1 cut(s)	948
BstZ17I	GTATAC	1 cut(s)	807
Bsu36I	CCTNAGG	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	607
BtsIMutI	CAGTG	2 cut(s)	192, 415
Cac8I	GCNNGC	2 cut(s)	157, 468
Cfr13I	GGNCC	4 cut(s)	56, 647, 671, 890
Csp6I	GTAC	2 cut(s)	207, 565
CviAII	CATG	1 cut(s)	156
CviQI	GTAC	2 cut(s)	207, 565
DdeI	CTNAG	5 cut(s)	52, 430, 616, 764, 796
DpnI	GATC	3 cut(s)	519, 548, 656
DpnII	GATC	3 cut(s)	517, 546, 654
Eam1104I	CTCTTC	4 cut(s)	276, 807, 817, 832
EarI	CTCTTC	4 cut(s)	276, 807, 817, 832
Eco32I	GATATC	2 cut(s)	288, 348
Eco47I	GGWCC	4 cut(s)	56, 647, 671, 890
Eco57I	CTGAAG	1 cut(s)	831
Eco81I	CCTNAGG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	892
EcoRV	GATATC	2 cut(s)	288, 348
FaeI	CATG	1 cut(s)	159
FaqI	GGGAC	3 cut(s)	212, 272, 684
FatI	CATG	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	806
Fnu4HI	GCNGC	3 cut(s)	478, 864, 915
FokI	GGATG	1 cut(s)	594
Fsp4HI	GCNGC	3 cut(s)	478, 864, 915
FspBI	CTAG	4 cut(s)	291, 680, 830, 980
GluI	GCNGC	3 cut(s)	478, 864, 915
GsaI	CCCAGC	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	1 cut(s)	667
Hin1II	CATG	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	6 cut(s)	260, 455, 490, 527, 639, 825
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	2 cut(s)	220, 807
Hpy188I	TCNGA	9 cut(s)	268, 345, 406, 433, 460, 619, 638, 799, 1032
Hpy188III	TCNNGA	5 cut(s)	169, 291, 450, 494, 733
Hpy8I	GTNNAC	2 cut(s)	220, 807
HpyAV	CCTTC	3 cut(s)	697, 871, 994
HpyCH4III	ACNGT	3 cut(s)	359, 410, 975
HpyCH4IV	ACGT	2 cut(s)	30, 328
HpyCH4V	TGCA	9 cut(s)	155, 304, 413, 425, 507, 866, 917, 971, 986
HpyF10VI	GCNNNNNNNGC	2 cut(s)	156, 968
HpyF3I	CTNAG	5 cut(s)	52, 430, 616, 764, 796
HpySE526I	ACGT	2 cut(s)	30, 328
Hsp92II	CATG	1 cut(s)	159
KpnI	GGTACC	1 cut(s)	568
Ksp22I	TGATCA	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	517, 546, 654
LmnI	GCTCC	2 cut(s)	510, 848
Lsp1109I	GCAGC	3 cut(s)	489, 850, 901
LweI	GCATC	4 cut(s)	31, 206, 616, 973
MaeI	CTAG	4 cut(s)	291, 680, 830, 980
MaeII	ACGT	2 cut(s)	30, 328
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	3 cut(s)	519, 548, 656
MboI	GATC	3 cut(s)	517, 546, 654
MluCI	AATT	3 cut(s)	444, 574, 934
MlyI	GAGTC	2 cut(s)	254, 834
MnlI	CCTC	8 cut(s)	92, 116, 170, 248, 274, 490, 613, 812
MseI	TTAA	4 cut(s)	539, 603, 1026, 1048
MspA1I	CMGCKG	1 cut(s)	914
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	2 cut(s)	668, 894
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	894
MwoI	GCNNNNNNNGC	2 cut(s)	156, 968
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	3 cut(s)	517, 546, 654
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	2 cut(s)	566, 672
NspI	RCATGY	1 cut(s)	159
PaeI	GCATGC	1 cut(s)	159
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	4 cut(s)	455, 490, 527, 639
PfoI	TCCNGGA	1 cut(s)	892
PkrI	GCNGC	3 cut(s)	479, 865, 916
PleI	GAGTC	2 cut(s)	254, 833
PpsI	GAGTC	2 cut(s)	254, 833
Psp6I	CCWGG	1 cut(s)	892
PspFI	CCCAGC	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	892
PspN4I	GGNNCC	2 cut(s)	566, 672
PspPI	GGNCC	4 cut(s)	56, 647, 671, 890
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	2 cut(s)	208, 566
RsaNI	GTAC	2 cut(s)	207, 565
SaqAI	TTAA	4 cut(s)	539, 603, 1026, 1048
SatI	GCNGC	3 cut(s)	478, 864, 915
Sau3AI	GATC	3 cut(s)	517, 546, 654
Sau96I	GGNCC	4 cut(s)	56, 647, 671, 890
SchI	GAGTC	2 cut(s)	254, 834
ScrFI	CCNGG	2 cut(s)	668, 894
SfaNI	GCATC	4 cut(s)	31, 206, 616, 973
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	4 cut(s)	56, 647, 671, 890
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	3 cut(s)	444, 574, 934
SspMI	CTAG	4 cut(s)	291, 680, 830, 980
StyD4I	CCNGG	2 cut(s)	666, 892
TaaI	ACNGT	3 cut(s)	359, 410, 975
TaiI	ACGT	2 cut(s)	33, 331
TaqI	TCGA	1 cut(s)	932
TasI	AATT	3 cut(s)	444, 574, 934
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	4 cut(s)	455, 490, 527, 639
Tru1I	TTAA	4 cut(s)	539, 603, 1026, 1048
Tru9I	TTAA	4 cut(s)	539, 603, 1026, 1048
TscAI	CASTG	2 cut(s)	192, 415
TseI	GCWGC	3 cut(s)	477, 863, 914
TspDTI	ATGAA	1 cut(s)	579
TspGWI	ACGGA	2 cut(s)	287, 660
TspRI	CASTG	2 cut(s)	192, 415
Vha464I	CTTAAG	1 cut(s)	602
VpaK11BI	GGWCC	4 cut(s)	56, 647, 671, 890
XapI	RAATTY	2 cut(s)	444, 934
XbaI	TCTAGA	1 cut(s)	290
XceI	RCATGY	1 cut(s)	159
XmiI	GTMKAC	1 cut(s)	806
XspI	CTAG	4 cut(s)	291, 680, 830, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.