Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Reverse (-)

63494277 .. 63496220

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG406800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGCAATCACCTTGCCTGAAAGAGGTCACAGAAGTATGCCTCAGCGGCTGCTGCTCCTCCCGCTCCTCCCCCTTTTTCAAGTCCACAGTGTCTCACGACACCGCCTCAAAGTCTGGAAGCACTTCTGCAGCTTGCCGTCGTGACTTTGCAGCCAAAACTTCAGCATCCATCTTCCCAAACACCCAGTTCACCAACCATGAGTCTATACCATCCTTGCAAAAGTCCTTCTCTGACTTCACCAGGGCTTATCCGAGATACTATGAGACAGCAGAAGTGGACCAGATACGAGCTCAGGAGTACTACCATCTCACACAATCCAATCATACCTGCCTTGATTATATAGGCATCGGTCTCTTCTCGTCTTCCCAGCTGCACAAACAGGAATCATCAAAACAAAAGGTTTATGGGGAAAACCCATCTGGCTTTGCATGCCTCTTTGTCAAGAAATCAGCTATTCCAGTGCTGGAAGCATCTACAAGTACAGGGATTGTAAACCTTGTCCCAGCACAGGAGTTTCTTCAAATAGGAGGGGACTCCTCTGACACAGAAGTTGAAGAGATATCTAGACTTCGTTTGCAAGAAGATATATTGGATATATCACGTTCTTTCTCTGGTCTGATATCAAATCACAGTCATCGGGGAACACCTACGAAAAGGTTAGAACAAGGAGAACTCTCTGACAGTGCAGAAGATGGCGCAAACTCAGAAGAACTGGAAATTTCAGGAGAATCTGAAAGGCTTGCCAAGAGCAGCAAAAATGGGAATCAAGAGGTTGTATGCAGGAGCTTGGATCAAGTGGATTCTCTGGGGTTAATACTGATCACTAACAGGGCAAGGTACCTGATAAATTGGTTGGTGAGTTCATTGAGAAAGCTTAAGCATCCTAACTCAGAGGGAGTTCCTTTGGTCAGAATCTACGGACCAAAGATCAAATATGACCGGGGACCAGCTCTAGCATTCAATGTATTTGATTGGAAGGGTGAAAAGGTTGAGCCTGTTCTTGTCCAGAAACTTGCTGATAGAAACAACATTTCTCTTAGCTACGGATTCTTACACCATATCTGGTTCTCAGATAAGTATGCTGAAGAGAGAGGAAGAGTCCTAGAGAGAAGAGATAGTGGTGCAAAAGGAATGGCTGCAAACAAGTTGAAGGCAAAATCTGGTCCAGGAATAAGTGTGGTTACAGCTGCACTCGGGTTTGTATCAAATTTTGAAGACATATACAGGCTTTGGGCTTTTGTTGCACAGTTCCTAGATGCAGATTTTGTGGAGAAGGAGAGATGGAGATATACAGCTCTTAATCAGAAAACCATTGAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

440

Amino Acids

49.05

Weight (kDa)

6.81

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
Acc65I	GGTACC	1 cut(s)	837
AccB1I	GGYRCC	1 cut(s)	837
AccBSI	CCGCTC	1 cut(s)	63
AciI	CCGC	3 cut(s)	45, 61, 102
AclWI	GGATC	1 cut(s)	798
AcsI	RAATTY	2 cut(s)	717, 1207
AcuI	CTGAAG	2 cut(s)	144, 1104
AfaI	GTAC	3 cut(s)	299, 481, 839
AfiI	CCNNNNNNNGG	2 cut(s)	22, 508
AflII	CTTAAG	1 cut(s)	875
AgsI	TTSAA	7 cut(s)	79, 521, 554, 961, 1150, 1214, 1316
AjnI	CCWGG	2 cut(s)	239, 1165
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	3 cut(s)	96, 257, 356
AlwI	GGATC	1 cut(s)	798
AlwNI	CAGNNNCTG	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	1193
ApeKI	GCWGC	8 cut(s)	48, 51, 128, 149, 370, 750, 1136, 1187
ApoI	RAATTY	2 cut(s)	717, 1207
Asp700I	GAANNNNTTC	1 cut(s)	121
Asp718I	GGTACC	1 cut(s)	837
AspLEI	GCGC	1 cut(s)	698
AspS9I	GGNCC	4 cut(s)	277, 920, 944, 1163
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	4 cut(s)	181, 229, 868, 992
AvaI	CYCGRG	1 cut(s)	1193
AvaII	GGWCC	4 cut(s)	277, 920, 944, 1163
BanI	GGYRCC	1 cut(s)	837
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	354, 1221
Bbv12I	GWGCWC	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	41
BbvI	GCAGC	8 cut(s)	35, 38, 140, 161, 357, 762, 1123, 1174
BccI	CCATC	6 cut(s)	176, 217, 312, 424, 686, 1275
BceAI	ACGGC	1 cut(s)	120
BciT130I	CCWGG	2 cut(s)	241, 1167
BclI	TGATCA	1 cut(s)	819
BcnI	CCSGG	1 cut(s)	941
BcoDI	GTCTC	3 cut(s)	96, 257, 356
BfaI	CTAG	4 cut(s)	564, 953, 1103, 1253
BfmI	CTRYAG	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	875
BfuAI	ACCTGC	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	9 cut(s)	46, 49, 52, 129, 150, 371, 751, 1137, 1188
BlsI	GCNGC	9 cut(s)	47, 50, 53, 130, 151, 372, 752, 1138, 1189
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	3 cut(s)	241, 941, 1167
Bme18I	GGWCC	4 cut(s)	277, 920, 944, 1163
BmeT110I	CYCGRG	1 cut(s)	1193
BmgT120I	GGNCC	4 cut(s)	277, 920, 944, 1163
BmiI	GGNNCC	2 cut(s)	839, 945
BmrFI	CCNGG	3 cut(s)	241, 941, 1167
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	5 cut(s)	173, 354, 479, 889, 1246
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	2 cut(s)	354, 1221
Bpu10I	CCTNAGC	2 cut(s)	41, 291
BpuMI	CCSGG	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	240, 940
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 508
Bse1I	ACTGG	3 cut(s)	184, 458, 717
BseBI	CCWGG	2 cut(s)	241, 1167
BseDI	CCNNGG	2 cut(s)	240, 940
BseGI	GGATG	3 cut(s)	164, 209, 880
BseLI	CCNNNNNNNGG	2 cut(s)	22, 508
BseMII	CTCAG	5 cut(s)	55, 305, 717, 903, 1083
BseNI	ACTGG	3 cut(s)	184, 458, 717
BseRI	GAGGAG	3 cut(s)	46, 55, 526
BseXI	GCAGC	8 cut(s)	35, 38, 140, 161, 357, 762, 1123, 1174
BseYI	CCCAGC	2 cut(s)	366, 502
BsgI	GTGCAG	3 cut(s)	356, 705, 1173
BshNI	GGYRCC	1 cut(s)	837
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	1193
BsiSI	CCGG	1 cut(s)	940
BslFI	GGGAC	3 cut(s)	485, 545, 957
BslI	CCNNNNNNNGG	2 cut(s)	22, 508
BsmAI	GTCTC	3 cut(s)	96, 257, 356
BsmFI	GGGAC	3 cut(s)	485, 545, 957
BsmI	GAATGC	1 cut(s)	956
Bso31I	GGTCTC	1 cut(s)	356
BsoBI	CYCGRG	1 cut(s)	1193
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	790, 819, 927
BspACI	CCGC	3 cut(s)	45, 61, 102
BspCNI	CTCAG	5 cut(s)	54, 304, 716, 902, 1082
BspLI	GGNNCC	2 cut(s)	839, 945
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	798
BspT107I	GGYRCC	1 cut(s)	837
BspTI	CTTAAG	1 cut(s)	875
BspTNI	GGTCTC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	63
BsrI	ACTGG	3 cut(s)	184, 458, 717
BssECI	CCNNGG	2 cut(s)	240, 940
BssMI	GATC	3 cut(s)	790, 819, 927
Bst2UI	CCWGG	2 cut(s)	241, 1167
Bst4CI	ACNGT	4 cut(s)	88, 632, 683, 1248
Bst6I	CTCTTC	5 cut(s)	359, 549, 1080, 1090, 1105
BstAFI	CTTAAG	1 cut(s)	875
BstC8I	GCNNGC	3 cut(s)	133, 430, 741
BstDEI	CTNAG	6 cut(s)	41, 291, 703, 889, 1037, 1069
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	3 cut(s)	164, 209, 880
BstHHI	GCGC	1 cut(s)	698
BstKTI	GATC	3 cut(s)	793, 822, 930
BstMAI	GTCTC	3 cut(s)	96, 257, 356
BstMBI	GATC	3 cut(s)	790, 819, 927
BstMWI	GCNNNNNNNGC	5 cut(s)	45, 51, 60, 429, 1241
BstNI	CCWGG	2 cut(s)	241, 1167
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	3 cut(s)	239, 939, 1165
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	8 cut(s)	35, 38, 140, 161, 357, 762, 1123, 1174
BstV2I	GAAGAC	2 cut(s)	354, 1221
BtsCI	GGATG	3 cut(s)	164, 209, 880
BtsIMutI	CAGTG	3 cut(s)	93, 465, 688
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	3 cut(s)	133, 430, 741
CaiI	CAGNNNCTG	1 cut(s)	48
CfoI	GCGC	1 cut(s)	698
Cfr13I	GGNCC	4 cut(s)	277, 920, 944, 1163
Csp6I	GTAC	3 cut(s)	298, 480, 838
CviAII	CATG	2 cut(s)	197, 429
CviQI	GTAC	3 cut(s)	298, 480, 838
DdeI	CTNAG	6 cut(s)	41, 291, 703, 889, 1037, 1069
DpnI	GATC	3 cut(s)	792, 821, 929
DpnII	GATC	3 cut(s)	790, 819, 927
Eam1104I	CTCTTC	5 cut(s)	359, 549, 1080, 1090, 1105
EarI	CTCTTC	5 cut(s)	359, 549, 1080, 1090, 1105
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	356
Eco32I	GATATC	2 cut(s)	561, 621
Eco47I	GGWCC	4 cut(s)	277, 920, 944, 1163
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	144, 1104
Eco88I	CYCGRG	1 cut(s)	1193
EcoICRI	GAGCTC	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoRII	CCWGG	2 cut(s)	239, 1165
EcoRV	GATATC	2 cut(s)	561, 621
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	2 cut(s)	200, 432
FaqI	GGGAC	3 cut(s)	485, 545, 957
FatI	CATG	2 cut(s)	196, 428
FauI	CCCGC	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	819
Fnu4HI	GCNGC	9 cut(s)	46, 49, 52, 129, 150, 371, 751, 1137, 1188
FokI	GGATG	3 cut(s)	151, 196, 867
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	9 cut(s)	46, 49, 52, 129, 150, 371, 751, 1137, 1188
FspBI	CTAG	4 cut(s)	564, 953, 1103, 1253
GlaI	GCGC	1 cut(s)	697
GluI	GCNGC	9 cut(s)	46, 49, 52, 129, 150, 371, 751, 1137, 1188
GsaI	CCCAGC	2 cut(s)	370, 506
HapII	CCGG	1 cut(s)	940
HhaI	GCGC	1 cut(s)	698
Hin1II	CATG	2 cut(s)	200, 432
Hin6I	GCGC	1 cut(s)	696
HinP1I	GCGC	1 cut(s)	696
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	9 cut(s)	200, 383, 533, 728, 763, 800, 912, 1047, 1098
HpaII	CCGG	1 cut(s)	940
HphI	GGTGA	4 cut(s)	181, 229, 868, 992
Hpy166II	GTNNAC	4 cut(s)	84, 189, 277, 493
Hpy188III	TCNNGA	9 cut(s)	95, 114, 140, 293, 442, 564, 723, 767, 1006
Hpy8I	GTNNAC	4 cut(s)	84, 189, 277, 493
Hpy99I	CGWCG	1 cut(s)	141
HpyAV	CCTTC	4 cut(s)	235, 970, 1144, 1267
HpyCH4III	ACNGT	4 cut(s)	88, 632, 683, 1248
HpyCH4IV	ACGT	1 cut(s)	601
HpyF10VI	GCNNNNNNNGC	5 cut(s)	45, 51, 60, 429, 1241
HpyF3I	CTNAG	6 cut(s)	41, 291, 703, 889, 1037, 1069
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	2 cut(s)	200, 432
HspAI	GCGC	1 cut(s)	696
KpnI	GGTACC	1 cut(s)	841
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	3 cut(s)	790, 819, 927
LmnI	GCTCC	3 cut(s)	59, 68, 783
Lsp1109I	GCAGC	8 cut(s)	35, 38, 140, 161, 357, 762, 1123, 1174
LweI	GCATC	5 cut(s)	173, 354, 479, 889, 1246
MaeI	CTAG	4 cut(s)	564, 953, 1103, 1253
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	3 cut(s)	25, 140, 1180
MalI	GATC	3 cut(s)	792, 821, 929
MbiI	CCGCTC	1 cut(s)	63
MboI	GATC	3 cut(s)	790, 819, 927
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	3 cut(s)	717, 847, 1207
MlyI	GAGTC	3 cut(s)	209, 527, 1107
MroXI	GAANNNNTTC	1 cut(s)	121
MseI	TTAA	4 cut(s)	812, 876, 1299, 1321
MspA1I	CMGCKG	3 cut(s)	45, 370, 1187
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	1 cut(s)	940
MspR9I	CCNGG	3 cut(s)	241, 941, 1167
Mva1269I	GAATGC	1 cut(s)	956
MvaI	CCWGG	2 cut(s)	241, 1167
MwoI	GCNNNNNNNGC	5 cut(s)	45, 51, 60, 429, 1241
NciI	CCSGG	1 cut(s)	941
NdeII	GATC	3 cut(s)	790, 819, 927
NlaIII	CATG	2 cut(s)	200, 432
NlaIV	GGNNCC	2 cut(s)	839, 945
NmuCI	GTSAC	2 cut(s)	25, 140
NspI	RCATGY	1 cut(s)	432
PaeI	GCATGC	1 cut(s)	432
PctI	GAATGC	1 cut(s)	956
PdmI	GAANNNNTTC	1 cut(s)	121
PfeI	GAWTC	6 cut(s)	383, 728, 763, 800, 912, 1047
PfoI	TCCNGGA	1 cut(s)	1165
PkrI	GCNGC	9 cut(s)	47, 50, 53, 130, 151, 372, 752, 1138, 1189
PleI	GAGTC	3 cut(s)	208, 527, 1106
PpsI	GAGTC	3 cut(s)	208, 527, 1106
Psp124BI	GAGCTC	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	239, 1165
PspFI	CCCAGC	2 cut(s)	366, 502
PspGI	CCWGG	2 cut(s)	239, 1165
PspN4I	GGNNCC	2 cut(s)	839, 945
PspPI	GGNCC	4 cut(s)	277, 920, 944, 1163
PstI	CTGCAG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	48
PvuII	CAGCTG	2 cut(s)	370, 1187
RsaI	GTAC	3 cut(s)	299, 481, 839
RsaNI	GTAC	3 cut(s)	298, 480, 838
SacI	GAGCTC	1 cut(s)	292
SaqAI	TTAA	4 cut(s)	812, 876, 1299, 1321
SatI	GCNGC	9 cut(s)	46, 49, 52, 129, 150, 371, 751, 1137, 1188
Sau3AI	GATC	3 cut(s)	790, 819, 927
Sau96I	GGNCC	4 cut(s)	277, 920, 944, 1163
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	3 cut(s)	209, 527, 1107
ScrFI	CCNGG	3 cut(s)	241, 941, 1167
SduI	GDGCHC	1 cut(s)	292
SfaNI	GCATC	5 cut(s)	173, 354, 479, 889, 1246
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	4 cut(s)	277, 920, 944, 1163
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
SphI	GCATGC	1 cut(s)	432
Sse9I	AATT	3 cut(s)	717, 847, 1207
SsiI	CCGC	3 cut(s)	45, 61, 102
SspMI	CTAG	4 cut(s)	564, 953, 1103, 1253
SstI	GAGCTC	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	239, 939, 1165
TaaI	ACNGT	4 cut(s)	88, 632, 683, 1248
TaiI	ACGT	1 cut(s)	604
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	3 cut(s)	717, 847, 1207
TatI	WGTACW	2 cut(s)	297, 479
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	6 cut(s)	383, 728, 763, 800, 912, 1047
Tru1I	TTAA	4 cut(s)	812, 876, 1299, 1321
Tru9I	TTAA	4 cut(s)	812, 876, 1299, 1321
TscAI	CASTG	3 cut(s)	93, 465, 688
TseFI	GTSAC	2 cut(s)	25, 140
TseI	GCWGC	8 cut(s)	48, 51, 128, 149, 370, 750, 1136, 1187
Tsp45I	GTSAC	2 cut(s)	25, 140
TspDTI	ATGAA	1 cut(s)	852
TspGWI	ACGGA	2 cut(s)	933, 1059
TspRI	CASTG	3 cut(s)	93, 465, 688
Vha464I	CTTAAG	1 cut(s)	875
VpaK11BI	GGWCC	4 cut(s)	277, 920, 944, 1163
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	2 cut(s)	717, 1207
XbaI	TCTAGA	1 cut(s)	563
XceI	RCATGY	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	121
XspI	CTAG	4 cut(s)	564, 953, 1103, 1253
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.