Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Reverse (-)

6909749 .. 6910519

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1056600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCAGTCACCTTGCTGGAAAGAGGTCACAGAAGTATGCCTTCGTGGCTGCTGCCCCAGCCCGTTACAGAAGTTGTCAGCACATCACCACCGCACCATGTCCAATTCCGGAAGCACTTCTGCAGCTTGTCGCTGTGACTTTGCAGCTACGACTTCATCATCCATATTCCCAAACACCGTGTTCACCAACCACGAGTCTCTCCTGTCTTTGCACGAGTCATTCGCTGACTTCACCAACATTTATCCCAAATACCATGAGACTGAGGAAGTTGATCGGATACGAGCTAAAGAGTACTACCATCTCTCACAGTCAAACCATAGCTGCCTTGATTATATTGGCATCAGCCTCTTCTCCTCTTCTCAGCTGCAAAATCACGAATCTTCTTCTCAAGTATGGTCGGATTTCCCCTTCTTTAGTTTGTTGTACAAGACAGGGAGTTTGAAGACGCAGCTACTTCATGGCGGCCAGGAATCAAAGCTGGAATTTGCAATGAGAAACAGGATTATGGATTTTCTTAACATATCGAAAAATGATTACAACATGGTTTTCACTGCCAACAGAACATCAATTTTTAAACTTGTGGCGGAATCTTACCCGTTCAAGACTAGTAGGAAGCTGCTGATGGTGTATGATTACGAGAGTGAGGTAGTGGAATGGATGATCAACAGCTCCGAAAAGAGAGGATTTAATGAAGGTAAGGAAGGTGTTTCTCCGTACTTTGTACGCAGTGGCTATTTGCAGTCATCAAGACCTTCGGAATCATCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

257

Amino Acids

29.26

Weight (kDa)

6.55

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	107
AciI	CCGC	3 cut(s)	91, 462, 584
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	482
AfaI	GTAC	4 cut(s)	293, 425, 716, 723
AgsI	TTSAA	2 cut(s)	442, 601
AhlI	ACTAGT	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	201, 251
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	8 cut(s)	48, 51, 122, 143, 321, 364, 448, 616
ApoI	RAATTY	1 cut(s)	482
ArsI	GACNNNNNNTTYG	2 cut(s)	421, 453
Asp700I	GAANNNNTTC	1 cut(s)	115
AsuHPI	GGTGA	3 cut(s)	77, 175, 223
BauI	CACGAG	2 cut(s)	191, 212
BbsI	GAAGAC	1 cut(s)	449
BbvI	GCAGC	8 cut(s)	35, 38, 134, 155, 308, 351, 460, 603
BccI	CCATC	2 cut(s)	306, 616
BciT130I	CCWGG	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	201, 251
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	270
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	9 cut(s)	49, 52, 123, 144, 322, 365, 449, 463, 617
BlsI	GCNGC	9 cut(s)	50, 53, 124, 145, 323, 366, 450, 464, 618
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	467
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	449
BpuEI	CTTGAG	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	495
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	467
BseGI	GGATG	2 cut(s)	158, 663
BseMI	GCAATG	1 cut(s)	495
BseMII	CTCAG	2 cut(s)	252, 374
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	8 cut(s)	35, 38, 134, 155, 308, 351, 460, 603
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	201, 251
BsnI	GGCC	1 cut(s)	465
Bsp13I	TCCGGA	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	271, 660
BspACI	CCGC	3 cut(s)	91, 462, 584
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	2 cut(s)	253, 373
BspEI	TCCGGA	1 cut(s)	107
BspMAI	CTGCAG	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	495
BsrGI	TGTACA	1 cut(s)	423
BssMI	GATC	2 cut(s)	271, 660
BssSI	CACGAG	2 cut(s)	191, 212
Bst2BI	CACGAG	2 cut(s)	191, 212
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	178, 309
Bst6I	CTCTTC	2 cut(s)	353, 361
BstAUI	TGTACA	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	261, 360
BstF5I	GGATG	2 cut(s)	158, 663
BstKTI	GATC	2 cut(s)	274, 663
BstMAI	GTCTC	2 cut(s)	201, 251
BstMBI	GATC	2 cut(s)	271, 660
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 57
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	8 cut(s)	35, 38, 134, 155, 308, 351, 460, 603
BstV2I	GAAGAC	1 cut(s)	449
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	158, 663
BtsI	GCAGTG	2 cut(s)	549, 733
BtsIMutI	CAGTG	2 cut(s)	549, 733
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	4 cut(s)	292, 424, 715, 722
CviAII	CATG	4 cut(s)	97, 254, 458, 541
CviQI	GTAC	4 cut(s)	292, 424, 715, 722
DdeI	CTNAG	2 cut(s)	261, 360
DpnI	GATC	2 cut(s)	273, 662
DpnII	GATC	2 cut(s)	271, 660
DraI	TTTAAA	1 cut(s)	574
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	2 cut(s)	353, 361
EarI	CTCTTC	2 cut(s)	353, 361
EciI	GGCGGA	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	465
FaeI	CATG	4 cut(s)	100, 257, 461, 544
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	4 cut(s)	96, 253, 457, 540
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	9 cut(s)	49, 52, 123, 144, 322, 365, 449, 463, 617
FokI	GGATG	2 cut(s)	145, 670
Fsp4HI	GCNGC	9 cut(s)	49, 52, 123, 144, 322, 365, 449, 463, 617
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	9 cut(s)	49, 52, 123, 144, 322, 365, 449, 463, 617
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	4 cut(s)	100, 257, 461, 544
HinfI	GANTC	6 cut(s)	194, 215, 377, 470, 587, 758
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	3 cut(s)	77, 175, 223
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	4 cut(s)	276, 400, 673, 757
Hpy188III	TCNNGA	4 cut(s)	108, 374, 601, 747
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	5 cut(s)	50, 418, 686, 695, 762
HpyCH4III	ACNGT	2 cut(s)	178, 309
HpyCH4V	TGCA	7 cut(s)	4, 122, 143, 211, 367, 488, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 57
HpyF3I	CTNAG	2 cut(s)	261, 360
Hsp92II	CATG	4 cut(s)	100, 257, 461, 544
Kpn2I	TCCGGA	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	2 cut(s)	271, 660
LmnI	GCTCC	1 cut(s)	674
LpnPI	CCDG	8 cut(s)	70, 121, 215, 417, 452, 464, 479, 484
Lsp1109I	GCAGC	8 cut(s)	35, 38, 134, 155, 308, 351, 460, 603
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	606
MaeIII	GTNAC	4 cut(s)	6, 25, 63, 134
MalI	GATC	2 cut(s)	273, 662
MboI	GATC	2 cut(s)	271, 660
MboII	GAAGA	5 cut(s)	340, 348, 372, 375, 454
MluCI	AATT	3 cut(s)	103, 482, 567
MlyI	GAGTC	2 cut(s)	203, 224
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	6 cut(s)	16, 256, 356, 364, 637, 674
MroI	TCCGGA	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	115
MseI	TTAA	3 cut(s)	516, 573, 687
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	45, 57
NdeII	GATC	2 cut(s)	271, 660
NlaIII	CATG	4 cut(s)	100, 257, 461, 544
NmuCI	GTSAC	3 cut(s)	6, 25, 134
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	4 cut(s)	377, 470, 587, 758
PkrI	GCNGC	9 cut(s)	50, 53, 124, 145, 323, 366, 450, 464, 618
PleI	GAGTC	2 cut(s)	202, 223
PpsI	GAGTC	2 cut(s)	202, 223
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	465
PstI	CTGCAG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	4 cut(s)	293, 425, 716, 723
RsaNI	GTAC	4 cut(s)	292, 424, 715, 722
SaqAI	TTAA	3 cut(s)	516, 573, 687
SatI	GCNGC	9 cut(s)	49, 52, 123, 144, 322, 365, 449, 463, 617
Sau3AI	GATC	2 cut(s)	271, 660
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	2 cut(s)	203, 224
ScrFI	CCNGG	1 cut(s)	467
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
SpeI	ACTAGT	1 cut(s)	605
Sse9I	AATT	3 cut(s)	103, 482, 567
SsiI	CCGC	3 cut(s)	91, 462, 584
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	1 cut(s)	465
TaaI	ACNGT	2 cut(s)	178, 309
TaqI	TCGA	1 cut(s)	524
TasI	AATT	3 cut(s)	103, 482, 567
TatI	WGTACW	2 cut(s)	291, 423
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	4 cut(s)	377, 470, 587, 758
Tru1I	TTAA	3 cut(s)	516, 573, 687
Tru9I	TTAA	3 cut(s)	516, 573, 687
TscAI	CASTG	2 cut(s)	556, 733
TseFI	GTSAC	3 cut(s)	6, 25, 134
TseI	GCWGC	8 cut(s)	48, 51, 122, 143, 321, 364, 448, 616
Tsp45I	GTSAC	3 cut(s)	6, 25, 134
TspDTI	ATGAA	3 cut(s)	144, 446, 705
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	2 cut(s)	556, 733
XapI	RAATTY	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	115
XspI	CTAG	1 cut(s)	606
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.