Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Reverse (-)

28337928 .. 28339967

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G288200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGCAGTCACCTTGTTTGAAAGAGGTCTCAGAAGTCTGCCTTAGCAGCTGCTGCCCCGCCCCCTTGTTTAAGTTGTCGGCGCATCACGATGCCATGTCCAAGTCCAGAAGCACTTCAGCAGCTTGCCGCCGTGACTTTGCAGCCACGACTTCATCATCCATCTTCCCAAACACCCAGTTCACCAACCATGAGTCTCTCCCGTCATTGCAAGAGTCTTTCTCTGACTTCATCAAAGTTTATCCTCGATACCAGGAGACTGCCCTAGTGGACCAAATAAGAGCTCAAGAATACTACCATCTCTCACAGTCAAACCACACCTGCCTTGATTATATTGGCATCGGCCTCTTCTCCTCTTCCCAGCTGCACAAACAGGAATCTTCTTCCCAACTGAATTCAGATTTCCCCTTCTTTAGTATATCCTACAAGACCGGGAATCTGAAGACACAGCTACTTCATGGCGGCCAAGAATCAGAACTGGAATCTGCAATGAGAAATAGAATCATGGATTTTCTTAATATTTCTGCAAATGATTACAGCATGGTTTTCACAGCCAACAGAACATCAGCTTTTAAACTTGTGGCAGAATCTTACCCGTACAAGACTAGTAGAAAGCTTCTGACAGTTTATGACTACGAGAGTGAGGCAGTGGAAGGAATGATTAATAACTCAGAAAAGAGAGGAGCCAAAGTCATGTCAGCAGAGTTTTCGTGGCCGAGGCTGAGGATTCAGTCGGCGAAGTTGAGGAAGATGGTTGTGAGTAAGAGGAAGAAGAAAAAGAAAAGGGGTCTTTTTGTCTTCCCAGTGCATTCTAGGATAACTGGTTCCAGATATCCTTATGTATGGATGACCATGGCTCAGGAAAATGGGTGGCATGTCCTAGTTGATGCTTGTGCATTGGGGCCAAAGGACATGGATAGCTTTGGCCTCTCTCTCTTTCAACCAGATTTCCTCATTTCTTCTTTCTACAAGATTTATGGGGAAAACCCATCTGGCTTTGCATGTCTCTTTGTCAAGAAATCTGCTATTTCATCTCTAGAATCTTCTACAAGTACAGGAATTGTAAATCTTGTCCCAGCAAAGAAATTGCTTCAGATAGCAGGGGATTCTTCTGGTACCGACACAGAGCTTGAACAGATATCTAGACTTGGCTTGCAACTAGATGCATTGGGCACAGCAAGTTCTTTCTCTGGTCTGATATCCAATCACACAACACAGACAAGAAGATTGGAACGAGAAGGCTATGAGAGTGCAGAAGAAGGTGCAAACCGGACAGGACTAGAAACTTCAGAGATACGGGAATTAGAGACACATGCCAATTTAATAAAGGATAAAAATTCCAGAAGCAGCAGAAATGGGGACAGCCTAGAGGTTGTATGCAGGGGCTTGGATCAAGTGGATTCACTGGGGCTAATGATGATCACTAACAGGGCAAGGTACCTCATCAATTGGCTGGTGAGCTCACTGAGAAAGCTTAAACATCCTAACACAGAGGGATTTCCTTTGGTCAAAATATATGGGCCAAAGATCAAATTTGACAGGGGACCAGCTCTGGCATTCAATGTATTTGATTGGAAAGGAGAAAAGAAGAGAAAGGGAGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

535

Amino Acids

59.91

Weight (kDa)

9.09

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	326
Acc65I	GGTACC	2 cut(s)	1112, 1434
AccB1I	GGYRCC	2 cut(s)	1112, 1434
AciI	CCGC	3 cut(s)	57, 127, 459
AclWI	GGATC	1 cut(s)	1395
AcoI	YGGCCR	2 cut(s)	460, 710
AcsI	RAATTY	3 cut(s)	391, 1333, 1529
AcuI	CTGAAG	4 cut(s)	99, 458, 1073, 1269
AfaI	GTAC	4 cut(s)	596, 1051, 1114, 1436
AgsI	TTSAA	4 cut(s)	19, 938, 1130, 1558
AhlI	ACTAGT	1 cut(s)	602
AjnI	CCWGG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	805, 837
Alw21I	GWGCWC	2 cut(s)	283, 1460
Alw26I	GTCTC	5 cut(s)	31, 198, 248, 1007, 1298
AlwI	GGATC	1 cut(s)	1395
AlwNI	CAGNNNCTG	1 cut(s)	51
AoxI	GGCC	6 cut(s)	340, 460, 710, 899, 922, 1517
ApeKI	GCWGC	7 cut(s)	45, 48, 51, 119, 140, 361, 1344
ApoI	RAATTY	3 cut(s)	391, 1333, 1529
AseI	ATTAAT	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	112
Asp718I	GGTACC	2 cut(s)	1112, 1434
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	4 cut(s)	268, 899, 1517, 1541
AsuC2I	CCSGG	1 cut(s)	430
AsuHPI	GGTGA	2 cut(s)	172, 1465
AvaII	GGWCC	2 cut(s)	268, 1541
BaeGI	GKGCMC	1 cut(s)	1172
BanI	GGYRCC	2 cut(s)	1112, 1434
BanII	GRGCYC	2 cut(s)	283, 1460
BbsI	GAAGAC	2 cut(s)	446, 787
Bbv12I	GWGCWC	2 cut(s)	283, 1460
BbvCI	CCTCAGC	1 cut(s)	719
BbvI	GCAGC	7 cut(s)	35, 38, 57, 131, 152, 348, 1356
BccI	CCATC	4 cut(s)	167, 303, 742, 994
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	687, 721
BciT130I	CCWGG	1 cut(s)	251
BclI	TGATCA	1 cut(s)	1416
BcnI	CCSGG	1 cut(s)	430
BcoDI	GTCTC	5 cut(s)	31, 198, 248, 1007, 1298
BcuI	ACTAGT	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	326
BisI	GCNGC	9 cut(s)	46, 49, 52, 120, 127, 141, 362, 460, 1345
BlsI	GCNGC	9 cut(s)	47, 50, 53, 121, 128, 142, 363, 461, 1346
Bme1390I	CCNGG	2 cut(s)	251, 430
Bme18I	GGWCC	2 cut(s)	268, 1541
BmgT120I	GGNCC	4 cut(s)	268, 899, 1517, 1541
BmiI	GGNNCC	6 cut(s)	682, 823, 900, 1114, 1436, 1542
BmrFI	CCNGG	2 cut(s)	251, 430
BmrI	ACTGGG	3 cut(s)	169, 794, 1412
BmsI	GCATC	5 cut(s)	79, 91, 345, 874, 1150
BmuI	ACTGGG	3 cut(s)	169, 794, 1412
BpiI	GAAGAC	2 cut(s)	446, 787
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
Bpu10I	CCTNAGC	3 cut(s)	41, 719, 855
BpuEI	CTTGAG	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	430
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	2 cut(s)	713, 849
BsaWI	WCCGGW	1 cut(s)	1266
BsaXI	ACNNNNNCTCC	2 cut(s)	672, 702
Bse1I	ACTGG	5 cut(s)	175, 480, 800, 823, 1407
Bse3DI	GCAATG	2 cut(s)	203, 492
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	2 cut(s)	713, 849
BseGI	GGATG	3 cut(s)	155, 849, 1477
BseMI	GCAATG	2 cut(s)	203, 492
BseMII	CTCAG	5 cut(s)	42, 681, 710, 869, 1454
BseNI	ACTGG	5 cut(s)	175, 480, 800, 823, 1407
BseRI	GAGGAG	2 cut(s)	340, 693
BseSI	GKGCMC	1 cut(s)	1172
BseXI	GCAGC	7 cut(s)	35, 38, 57, 131, 152, 348, 1356
BseYI	CCCAGC	2 cut(s)	357, 1072
BsgI	GTGCAG	2 cut(s)	347, 1269
BshFI	GGCC	6 cut(s)	342, 462, 712, 901, 924, 1519
BshNI	GGYRCC	2 cut(s)	1112, 1434
BsiHKAI	GWGCWC	2 cut(s)	283, 1460
BsiSI	CCGG	2 cut(s)	429, 1267
BslFI	GGGAC	3 cut(s)	1055, 1370, 1554
BsmAI	GTCTC	5 cut(s)	31, 198, 248, 1007, 1298
BsmFI	GGGAC	3 cut(s)	1055, 1370, 1554
BsmI	GAATGC	2 cut(s)	805, 1553
BsnI	GGCC	6 cut(s)	342, 462, 712, 901, 924, 1519
Bso31I	GGTCTC	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	283, 1172, 1460
Bsp143I	GATC	3 cut(s)	1387, 1416, 1524
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	3 cut(s)	57, 127, 459
BspANI	GGCC	6 cut(s)	342, 462, 712, 901, 924, 1519
BspCNI	CTCAG	5 cut(s)	41, 680, 711, 868, 1455
BspLI	GGNNCC	6 cut(s)	682, 823, 900, 1114, 1436, 1542
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	1395
BspT107I	GGYRCC	2 cut(s)	1112, 1434
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	2 cut(s)	203, 492
BsrI	ACTGG	5 cut(s)	175, 480, 800, 823, 1407
BssECI	CCNNGG	2 cut(s)	713, 849
BssMI	GATC	3 cut(s)	1387, 1416, 1524
BssT1I	CCWWGG	1 cut(s)	849
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	306, 622
Bst6I	CTCTTC	3 cut(s)	350, 358, 1580
BstAPI	GCANNNNNTGC	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	124, 1151
BstDEI	CTNAG	6 cut(s)	28, 41, 667, 719, 855, 1463
BstDSI	CCRYGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	155, 849, 1477
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	3 cut(s)	1390, 1419, 1527
BstMAI	GTCTC	5 cut(s)	31, 198, 248, 1007, 1298
BstMBI	GATC	3 cut(s)	1387, 1416, 1524
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 51
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	3 cut(s)	875, 1002, 1313
BstSCI	CCNGG	2 cut(s)	249, 428
BstSLI	GKGCMC	1 cut(s)	1172
BstV1I	GCAGC	7 cut(s)	35, 38, 57, 131, 152, 348, 1356
BstV2I	GAAGAC	2 cut(s)	446, 787
BsuRI	GGCC	6 cut(s)	342, 462, 712, 901, 924, 1519
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	3 cut(s)	155, 849, 1477
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	4 cut(s)	651, 807, 1400, 1460
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	124, 1151
CaiI	CAGNNNCTG	1 cut(s)	51
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	268, 899, 1517, 1541
Csp6I	GTAC	4 cut(s)	595, 1050, 1113, 1435
CviQI	GTAC	4 cut(s)	595, 1050, 1113, 1435
DdeI	CTNAG	6 cut(s)	28, 41, 667, 719, 855, 1463
DpnI	GATC	3 cut(s)	1389, 1418, 1526
DpnII	GATC	3 cut(s)	1387, 1416, 1524
DraI	TTTAAA	1 cut(s)	571
EaeI	YGGCCR	2 cut(s)	460, 710
Eam1104I	CTCTTC	3 cut(s)	350, 358, 1580
EarI	CTCTTC	3 cut(s)	350, 358, 1580
Ecl136II	GAGCTC	2 cut(s)	281, 1458
Eco130I	CCWWGG	1 cut(s)	849
Eco24I	GRGCYC	2 cut(s)	283, 1460
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	3 cut(s)	830, 1137, 1197
Eco47I	GGWCC	2 cut(s)	268, 1541
Eco53kI	GAGCTC	2 cut(s)	281, 1458
Eco57I	CTGAAG	4 cut(s)	99, 458, 1073, 1269
EcoICRI	GAGCTC	2 cut(s)	281, 1458
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	249
EcoRV	GATATC	3 cut(s)	830, 1137, 1197
EcoT14I	CCWWGG	1 cut(s)	849
EcoT22I	ATGCAT	1 cut(s)	1165
EcoT38I	GRGCYC	2 cut(s)	283, 1460
ErhI	CCWWGG	1 cut(s)	849
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	3 cut(s)	1055, 1370, 1554
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	1416
Fnu4HI	GCNGC	9 cut(s)	46, 49, 52, 120, 127, 141, 362, 460, 1345
FokI	GGATG	3 cut(s)	142, 856, 1464
FriOI	GRGCYC	2 cut(s)	283, 1460
Fsp4HI	GCNGC	9 cut(s)	46, 49, 52, 120, 127, 141, 362, 460, 1345
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	9 cut(s)	46, 49, 52, 120, 127, 141, 362, 460, 1345
GsaI	CCCAGC	2 cut(s)	361, 1076
HaeIII	GGCC	6 cut(s)	342, 462, 712, 901, 924, 1519
HapII	CCGG	2 cut(s)	429, 1267
HhaI	GCGC	1 cut(s)	82
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HindIII	AAGCTT	2 cut(s)	611, 1469
HpaII	CCGG	2 cut(s)	429, 1267
HphI	GGTGA	2 cut(s)	172, 1465
Hpy166II	GTNNAC	2 cut(s)	180, 268
Hpy188III	TCNNGA	9 cut(s)	86, 105, 284, 825, 857, 1012, 1034, 1140, 1338
Hpy8I	GTNNAC	2 cut(s)	180, 268
HpyAV	CCTTC	4 cut(s)	415, 644, 1229, 1250
HpyCH4III	ACNGT	2 cut(s)	306, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 51
HpyF3I	CTNAG	6 cut(s)	28, 41, 667, 719, 855, 1463
HspAI	GCGC	1 cut(s)	80
KpnI	GGTACC	2 cut(s)	1116, 1438
Ksp22I	TGATCA	1 cut(s)	1416
Kzo9I	GATC	3 cut(s)	1387, 1416, 1524
LmnI	GCTCC	1 cut(s)	680
Lsp1109I	GCAGC	7 cut(s)	35, 38, 57, 131, 152, 348, 1356
LweI	GCATC	5 cut(s)	79, 91, 345, 874, 1150
MaeIII	GTNAC	2 cut(s)	6, 131
MalI	GATC	3 cut(s)	1389, 1418, 1526
MboI	GATC	3 cut(s)	1387, 1416, 1524
MfeI	CAATTG	1 cut(s)	1444
MhlI	GDGCHC	3 cut(s)	283, 1172, 1460
MluCI	AATT	8 cut(s)	391, 1056, 1082, 1298, 1315, 1333, 1444, 1529
MlyI	GAGTC	2 cut(s)	200, 221
Mph1103I	ATGCAT	1 cut(s)	1165
MroXI	GAANNNNTTC	1 cut(s)	112
MseI	TTAA	6 cut(s)	69, 513, 570, 660, 1319, 1473
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	48, 361
MspI	CCGG	2 cut(s)	429, 1267
MspR9I	CCNGG	2 cut(s)	251, 430
MunI	CAATTG	1 cut(s)	1444
Mva1269I	GAATGC	2 cut(s)	805, 1553
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	2 cut(s)	45, 51
NciI	CCSGG	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	3 cut(s)	1387, 1416, 1524
NlaIV	GGNNCC	6 cut(s)	682, 823, 900, 1114, 1436, 1542
NmeAIII	GCCGAG	1 cut(s)	738
NmuCI	GTSAC	2 cut(s)	6, 131
NsiI	ATGCAT	1 cut(s)	1165
NspI	RCATGY	3 cut(s)	875, 1002, 1313
PaqCI	CACCTGC	1 cut(s)	326
PctI	GAATGC	2 cut(s)	805, 1553
PdmI	GAANNNNTTC	1 cut(s)	112
PkrI	GCNGC	9 cut(s)	47, 50, 53, 121, 128, 142, 363, 461, 1346
PleI	GAGTC	2 cut(s)	199, 220
PpsI	GAGTC	2 cut(s)	199, 220
PshBI	ATTAAT	1 cut(s)	660
Psp124BI	GAGCTC	2 cut(s)	283, 1460
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	2 cut(s)	357, 1072
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	6 cut(s)	682, 823, 900, 1114, 1436, 1542
PspPI	GGNCC	4 cut(s)	268, 899, 1517, 1541
PstNI	CAGNNNCTG	1 cut(s)	51
PvuII	CAGCTG	2 cut(s)	48, 361
RsaI	GTAC	4 cut(s)	596, 1051, 1114, 1436
RsaNI	GTAC	4 cut(s)	595, 1050, 1113, 1435
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	2 cut(s)	283, 1460
SaqAI	TTAA	6 cut(s)	69, 513, 570, 660, 1319, 1473
SatI	GCNGC	9 cut(s)	46, 49, 52, 120, 127, 141, 362, 460, 1345
Sau3AI	GATC	3 cut(s)	1387, 1416, 1524
Sau96I	GGNCC	4 cut(s)	268, 899, 1517, 1541
SchI	GAGTC	2 cut(s)	200, 221
ScrFI	CCNGG	2 cut(s)	251, 430
SduI	GDGCHC	3 cut(s)	283, 1172, 1460
SfaNI	GCATC	5 cut(s)	79, 91, 345, 874, 1150
SinI	GGWCC	2 cut(s)	268, 1541
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SpeI	ACTAGT	1 cut(s)	602
Sse9I	AATT	8 cut(s)	391, 1056, 1082, 1298, 1315, 1333, 1444, 1529
SsiI	CCGC	3 cut(s)	57, 127, 459
SspI	AATATT	1 cut(s)	517
SstI	GAGCTC	2 cut(s)	283, 1460
StyD4I	CCNGG	2 cut(s)	249, 428
StyI	CCWWGG	1 cut(s)	849
TaaI	ACNGT	2 cut(s)	306, 622
TaqI	TCGA	1 cut(s)	244
TasI	AATT	8 cut(s)	391, 1056, 1082, 1298, 1315, 1333, 1444, 1529
TatI	WGTACW	1 cut(s)	1049
TauI	GCSGC	2 cut(s)	129, 462
Tru1I	TTAA	6 cut(s)	69, 513, 570, 660, 1319, 1473
Tru9I	TTAA	6 cut(s)	69, 513, 570, 660, 1319, 1473
TscAI	CASTG	4 cut(s)	651, 807, 1407, 1467
TseFI	GTSAC	2 cut(s)	6, 131
TseI	GCWGC	7 cut(s)	45, 48, 51, 119, 140, 361, 1344
Tsp45I	GTSAC	2 cut(s)	6, 131
TspDTI	ATGAA	4 cut(s)	141, 217, 443, 1017
TspRI	CASTG	4 cut(s)	651, 807, 1407, 1467
VpaK11BI	GGWCC	2 cut(s)	268, 1541
VspI	ATTAAT	1 cut(s)	660
XapI	RAATTY	3 cut(s)	391, 1333, 1529
XbaI	TCTAGA	2 cut(s)	1033, 1139
XceI	RCATGY	3 cut(s)	875, 1002, 1313
XmnI	GAANNNNTTC	1 cut(s)	112
Zsp2I	ATGCAT	1 cut(s)	1165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.