Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005124

Physical Location & Seq

Genomic Coordinates Forward (+)

17614665 .. 17616404

Gene Structure 1740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17855

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGAACATCTCAGAAGTTGATTACACCTTGATTTTAACTGCCAATCAATCATCAGCTTTCAAACTTCTAGCAGACTCTTATCCCTTCCAGAACAATCCCAACCTATTGAGTGTTTATGACTACAAGAATGAGGCTGTGGATGTGATGGCAGAGAGCTGTAAGAAAAGAAGAGGACGAGTCATGTCTGCCGAGTTCTCATGGCCTAACATGAGAATTCATACAAGTAAATTGGGGAGAAAGATTGGGAAGAGGAAGAAGATCAGGAAGCGGCCCGGATTGTTCGTTTTCCCACTTCAATCAAGAGTCACCGGAGTTCGATACTCGTATCAGTGGATGAGCATAGCGCAGGAAAATGGGTGGCATGTGTTGCTTGATGCATGTGCATTGGGGCCTAAGGACATGGAGACATTAGGTCTCTCTTTGTTTAAGCCTGACTTTCTAATTTGCTCTTTCTTCAAAGTTTTCGGGGAAAATCCATCCGGCTTTGGTTGCTTGTTTGTCAAGAAATCGAGCGCTTCGGTGTTGAAGGATTCCTCAGTTGTTTCGAGCATAGGAATCGTGAGCCTCGTCGCATCTTCAATACCATCTCAATTAGTAGTAGAGAAGTCAAGTGACAAAGAAGTCTCAATAAAGCAAAAGGCACACACACTTTCGGAAATTGAGGAGCTAGAGAGAGATTCTGAGTCTGACCAATCCGAAAATTGGGAGAGTTATGAAAGTGGCAAGAGCTCAGGGATTGAATGTAGAGGTTTGGATCATGCAGATGAATTAGGCCTGGTACTAATTAGTAGGAGAGCAAGGTACCTGATCAACTGGTTAGTGAATGCATTGATGAGTCTTCGACATCCACATTACTCCGAATATGGGCATCAATTGGTCAAAATCTACGGCCCCAAGATTAAATTCGACAGAGGACCAAGCCTGGCATTCAATGTGTTCGATTGGAAAGGGGAGAAGATCGAGCCTTCAATTGTCCAGAAGCTTGCTGATCGACACAACATTTCGCTGAGCTACGGAATTTTGGACCACATTTGGTTCTCGGACAAGCACCAAGAAGAAAAGGAAACGAAGTCGGAGACATGTAGAAGTGAAGTGGAAGGAGCTCATGTTTCTGTGGTCACAGCTGCATTGGGCTTCTTGACAAATTTTGAAGACATTTACAGGCTTTGGGCATTTGTTTCGAGGTTTTTGGATGCCGACTTTGTGGAGAAGGAAAGGTGGAGATACATGGCCCTCAATCAAAGGACTGTTGAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

419

Amino Acids

47.77

Weight (kDa)

8.08

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51920
fragaria_vesca	FvH4_4g10020 FvH4_5g01360
malus_domestica	MD00G1005100.v1.1 MD04G1056600.v1.1 MD04G1069100.v1.1
prunus_persica	Prupe.2G288200_v2.0.a1 Prupe.5G089000_v2.0.a1
pyrus_communis	pycom04g06290 pycom07g24010
rosa_chinensis	RchiOBHm_Chr7g0199531
rosa_laevigata	RLG00000003787 RLG00000026609
rosa_multiflora	Rmu_sc0001198.1_g000009 Rmu_sc0005594.1_g000022 Rmu_sc0007070.1_g000003 Rmu_sc0016074.1_g000005
rosa_roxburghii	Rroxscaffold_3G00256630 Rroxscaffold_4G00282180
rosa_rugosa	Rorug07G0055300
rosa_samantha	Rh1AG406800 Rh1BG370900 Rh1CG383700 Rh1DG400600 Rh7AG179800 Rh7BG183100 Rh7CG188800 Rh7DG182500
rosa_wichuraiana	Rw1G036120 Rw7G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	801
AccB1I	GGYRCC	1 cut(s)	801
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	1 cut(s)	762
AcsI	RAATTY	4 cut(s)	213, 902, 1017, 1144
AfaI	GTAC	2 cut(s)	780, 803
AfeI	AGCGCT	1 cut(s)	514
AfiI	CCNNNNNNNGG	2 cut(s)	702, 864
AflIII	ACRYGT	1 cut(s)	1079
AgsI	TTSAA	9 cut(s)	61, 296, 457, 526, 579, 740, 931, 969, 1151
AhdI	GACNNNNNGTC	1 cut(s)	411
AjnI	CCWGG	2 cut(s)	774, 921
AjuI	GAANNNNNNNTTGG	2 cut(s)	887, 919
AluBI	AGCT	8 cut(s)	56, 156, 667, 729, 982, 1011, 1103, 1124
AluI	AGCT	8 cut(s)	56, 156, 667, 729, 982, 1011, 1103, 1124
Alw21I	GWGCWC	2 cut(s)	731, 1105
Alw26I	GTCTC	4 cut(s)	398, 419, 628, 1070
AlwI	GGATC	1 cut(s)	762
Aor51HI	AGCGCT	1 cut(s)	514
AoxI	GGCC	6 cut(s)	200, 269, 389, 772, 889, 1230
ApeKI	GCWGC	1 cut(s)	1124
ApoI	RAATTY	4 cut(s)	213, 902, 1017, 1144
Asp718I	GGTACC	1 cut(s)	801
AspLEI	GCGC	2 cut(s)	346, 515
AspS9I	GGNCC	6 cut(s)	270, 389, 890, 914, 1024, 1231
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	914, 1024
AxyI	CCTNAGG	1 cut(s)	393
BanI	GGYRCC	1 cut(s)	801
BanII	GRGCYC	2 cut(s)	731, 1105
BbsI	GAAGAC	2 cut(s)	830, 1158
Bbv12I	GWGCWC	2 cut(s)	731, 1105
BbvI	GCAGC	1 cut(s)	1111
BccI	CCATC	3 cut(s)	139, 484, 592
BceAI	ACGGC	1 cut(s)	904
BcgI	CGANNNNNNTGC	4 cut(s)	538, 572, 1161, 1195
BciT130I	CCWGG	2 cut(s)	776, 923
BclI	TGATCA	1 cut(s)	807
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	4 cut(s)	398, 419, 628, 1070
BfaI	CTAG	2 cut(s)	68, 668
BfoI	RGCGCY	1 cut(s)	516
BisI	GCNGC	2 cut(s)	269, 1125
BlpI	GCTNAGC	1 cut(s)	1007
BlsI	GCNGC	2 cut(s)	270, 1126
Bme1390I	CCNGG	3 cut(s)	273, 776, 923
Bme18I	GGWCC	2 cut(s)	914, 1024
BmeRI	GACNNNNNGTC	1 cut(s)	411
BmgT120I	GGNCC	6 cut(s)	270, 389, 890, 914, 1024, 1231
BmiI	GGNNCC	3 cut(s)	390, 803, 892
BmrFI	CCNGG	3 cut(s)	273, 776, 923
BmsI	GCATC	4 cut(s)	364, 581, 877, 1183
BpiI	GAAGAC	2 cut(s)	830, 1158
Bpu10I	CCTNAGC	1 cut(s)	730
Bpu1102I	GCTNAGC	1 cut(s)	1007
BpuMI	CCSGG	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	419
BsaWI	WCCGGW	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	1092, 1122
Bsc4I	CCNNNNNNNGG	2 cut(s)	702, 864
Bse1I	ACTGG	1 cut(s)	818
Bse21I	CCTNAGG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	776, 923
BseGI	GGATG	5 cut(s)	145, 339, 476, 844, 1198
BseLI	CCNNNNNNNGG	2 cut(s)	702, 864
BseMII	CTCAG	5 cut(s)	24, 549, 672, 744, 998
BseNI	ACTGG	1 cut(s)	818
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	1 cut(s)	1111
BshFI	GGCC	6 cut(s)	202, 271, 391, 774, 891, 1232
BshNI	GGYRCC	1 cut(s)	801
BsiHKAI	GWGCWC	2 cut(s)	731, 1105
BsiSI	CCGG	3 cut(s)	273, 309, 480
BslI	CCNNNNNNNGG	2 cut(s)	702, 864
BsmAI	GTCTC	4 cut(s)	398, 419, 628, 1070
BsmI	GAATGC	2 cut(s)	829, 926
BsnI	GGCC	6 cut(s)	202, 271, 391, 774, 891, 1232
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	731, 1105
Bsp143I	GATC	5 cut(s)	258, 754, 807, 957, 988
Bsp1720I	GCTNAGC	1 cut(s)	1007
BspACI	CCGC	1 cut(s)	268
BspANI	GGCC	6 cut(s)	202, 271, 391, 774, 891, 1232
BspCNI	CTCAG	5 cut(s)	23, 548, 673, 743, 999
BspLI	GGNNCC	3 cut(s)	390, 803, 892
BspPI	GGATC	1 cut(s)	762
BspT107I	GGYRCC	1 cut(s)	801
BspTNI	GGTCTC	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	818
BssMI	GATC	5 cut(s)	258, 754, 807, 957, 988
Bst2UI	CCWGG	2 cut(s)	776, 923
Bst4CI	ACNGT	1 cut(s)	1249
Bst6I	CTCTTC	2 cut(s)	163, 242
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstC8I	GCNNGC	1 cut(s)	984
BstDEI	CTNAG	6 cut(s)	10, 393, 535, 681, 730, 1007
BstF5I	GGATG	5 cut(s)	145, 339, 476, 844, 1198
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	2 cut(s)	346, 515
BstKTI	GATC	5 cut(s)	261, 757, 810, 960, 991
BstMAI	GTCTC	4 cut(s)	398, 419, 628, 1070
BstMBI	GATC	5 cut(s)	258, 754, 807, 957, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 489
BstNI	CCWGG	2 cut(s)	776, 923
BstNSI	RCATGY	3 cut(s)	365, 381, 1083
BstSCI	CCNGG	3 cut(s)	271, 774, 921
BstV1I	GCAGC	1 cut(s)	1111
BstV2I	GAAGAC	2 cut(s)	830, 1158
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	6 cut(s)	202, 271, 391, 774, 891, 1232
BtsCI	GGATG	5 cut(s)	145, 339, 476, 844, 1198
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	984
CfoI	GCGC	2 cut(s)	346, 515
Cfr13I	GGNCC	6 cut(s)	270, 389, 890, 914, 1024, 1231
Csp6I	GTAC	2 cut(s)	779, 802
CviQI	GTAC	2 cut(s)	779, 802
DdeI	CTNAG	6 cut(s)	10, 393, 535, 681, 730, 1007
DpnI	GATC	5 cut(s)	260, 756, 809, 959, 990
DpnII	GATC	5 cut(s)	258, 754, 807, 957, 988
DrdI	GACNNNNNNGTC	1 cut(s)	620
DriI	GACNNNNNGTC	1 cut(s)	411
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eam1104I	CTCTTC	2 cut(s)	163, 242
Eam1105I	GACNNNNNGTC	1 cut(s)	411
EarI	CTCTTC	2 cut(s)	163, 242
Ecl136II	GAGCTC	2 cut(s)	729, 1103
Eco147I	AGGCCT	1 cut(s)	774
Eco24I	GRGCYC	2 cut(s)	731, 1105
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	914, 1024
Eco47III	AGCGCT	1 cut(s)	514
Eco53kI	GAGCTC	2 cut(s)	729, 1103
Eco81I	CCTNAGG	1 cut(s)	393
EcoICRI	GAGCTC	2 cut(s)	729, 1103
EcoO109I	RGGNCCY	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	774, 921
EcoT22I	ATGCAT	2 cut(s)	379, 829
EcoT38I	GRGCYC	2 cut(s)	731, 1105
FalI	AAGNNNNNCTT	2 cut(s)	419, 451
FbaI	TGATCA	1 cut(s)	807
Fnu4HI	GCNGC	2 cut(s)	269, 1125
FokI	GGATG	5 cut(s)	152, 346, 463, 831, 1205
FriOI	GRGCYC	2 cut(s)	731, 1105
Fsp4HI	GCNGC	2 cut(s)	269, 1125
FspBI	CTAG	2 cut(s)	68, 668
GlaI	GCGC	2 cut(s)	345, 514
GluI	GCNGC	2 cut(s)	269, 1125
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	6 cut(s)	202, 271, 391, 774, 891, 1232
HapII	CCGG	3 cut(s)	273, 309, 480
HhaI	GCGC	2 cut(s)	346, 515
Hin6I	GCGC	2 cut(s)	344, 513
HinP1I	GCGC	2 cut(s)	344, 513
HindIII	AAGCTT	1 cut(s)	980
HinfI	GANTC	8 cut(s)	74, 177, 303, 530, 555, 677, 683, 835
HpaII	CCGG	3 cut(s)	273, 309, 480
HphI	GGTGA	1 cut(s)	298
Hpy188I	TCNGA	8 cut(s)	13, 655, 682, 688, 697, 859, 1042, 1075
Hpy188III	TCNNGA	7 cut(s)	88, 262, 300, 502, 559, 976, 1138
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	5 cut(s)	94, 520, 975, 1091, 1204
HpyCH4III	ACNGT	1 cut(s)	1249
HpyCH4V	TGCA	5 cut(s)	377, 383, 761, 827, 1127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 489
HpyF3I	CTNAG	6 cut(s)	10, 393, 535, 681, 730, 1007
HspAI	GCGC	2 cut(s)	344, 513
KpnI	GGTACC	1 cut(s)	805
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	5 cut(s)	258, 754, 807, 957, 988
LmnI	GCTCC	2 cut(s)	664, 1100
Lsp1109I	GCAGC	1 cut(s)	1111
LweI	GCATC	4 cut(s)	364, 581, 877, 1183
MaeI	CTAG	2 cut(s)	68, 668
MaeIII	GTNAC	3 cut(s)	304, 611, 1117
MalI	GATC	5 cut(s)	260, 756, 809, 959, 990
MboI	GATC	5 cut(s)	258, 754, 807, 957, 988
MfeI	CAATTG	2 cut(s)	872, 969
MhlI	GDGCHC	2 cut(s)	731, 1105
MlyI	GAGTC	5 cut(s)	68, 186, 312, 692, 844
MmeI	TCCRAC	1 cut(s)	1053
Mph1103I	ATGCAT	2 cut(s)	379, 829
MseI	TTAA	3 cut(s)	35, 426, 900
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	1124
MspI	CCGG	3 cut(s)	273, 309, 480
MspR9I	CCNGG	3 cut(s)	273, 776, 923
MunI	CAATTG	2 cut(s)	872, 969
Mva1269I	GAATGC	2 cut(s)	829, 926
MvaI	CCWGG	2 cut(s)	776, 923
MwoI	GCNNNNNNNGC	2 cut(s)	367, 489
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	5 cut(s)	258, 754, 807, 957, 988
NlaIV	GGNNCC	3 cut(s)	390, 803, 892
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	3 cut(s)	304, 611, 1117
NsiI	ATGCAT	2 cut(s)	379, 829
NspI	RCATGY	3 cut(s)	365, 381, 1083
PceI	AGGCCT	1 cut(s)	774
PciI	ACATGT	1 cut(s)	1079
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	2 cut(s)	829, 926
PfeI	GAWTC	3 cut(s)	530, 555, 677
PkrI	GCNGC	2 cut(s)	270, 1126
PleI	GAGTC	5 cut(s)	68, 185, 311, 691, 843
PpsI	GAGTC	5 cut(s)	68, 185, 311, 691, 843
PscI	ACATGT	1 cut(s)	1079
Psp124BI	GAGCTC	2 cut(s)	731, 1105
Psp6I	CCWGG	2 cut(s)	774, 921
PspGI	CCWGG	2 cut(s)	774, 921
PspN4I	GGNNCC	3 cut(s)	390, 803, 892
PspPI	GGNCC	6 cut(s)	270, 389, 890, 914, 1024, 1231
PvuII	CAGCTG	1 cut(s)	1124
RsaI	GTAC	2 cut(s)	780, 803
RsaNI	GTAC	2 cut(s)	779, 802
RseI	CAYNNNNRTG	1 cut(s)	762
SacI	GAGCTC	2 cut(s)	731, 1105
SaqAI	TTAA	3 cut(s)	35, 426, 900
SatI	GCNGC	2 cut(s)	269, 1125
Sau3AI	GATC	5 cut(s)	258, 754, 807, 957, 988
Sau96I	GGNCC	6 cut(s)	270, 389, 890, 914, 1024, 1231
SchI	GAGTC	5 cut(s)	68, 186, 312, 692, 844
ScrFI	CCNGG	3 cut(s)	273, 776, 923
SduI	GDGCHC	2 cut(s)	731, 1105
SfaNI	GCATC	4 cut(s)	364, 581, 877, 1183
SinI	GGWCC	2 cut(s)	914, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	762
SseBI	AGGCCT	1 cut(s)	774
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	68, 668
SstI	GAGCTC	2 cut(s)	731, 1105
StuI	AGGCCT	1 cut(s)	774
StyD4I	CCNGG	3 cut(s)	271, 774, 921
TaaI	ACNGT	1 cut(s)	1249
TaqI	TCGA	9 cut(s)	316, 509, 545, 841, 906, 939, 960, 991, 1181
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	3 cut(s)	530, 555, 677
Tru1I	TTAA	3 cut(s)	35, 426, 900
Tru9I	TTAA	3 cut(s)	35, 426, 900
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	3 cut(s)	304, 611, 1117
TseI	GCWGC	1 cut(s)	1124
Tsp45I	GTSAC	3 cut(s)	304, 611, 1117
TspDTI	ATGAA	4 cut(s)	17, 206, 729, 780
TspGWI	ACGGA	1 cut(s)	1029
TspRI	CASTG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	914, 1024
XapI	RAATTY	4 cut(s)	213, 902, 1017, 1144
XceI	RCATGY	3 cut(s)	365, 381, 1083
XspI	CTAG	2 cut(s)	68, 668
Zsp2I	ATGCAT	2 cut(s)	379, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.