Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003800

Physical Location & Seq

Genomic Coordinates Forward (+)

4945917 .. 4948323

Gene Structure 2407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1030500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGTAATGGGGAGCAGCAGCCGCCAAAGCAGCGGCAGCAATAGCAGGCGGGTGAGGGCGTTCAAGCGATGGATGAAGCAGGAAGGGATTGAATGCAGCGACGCCCTAGACTTGCGGAACGACGGAGCTACCGCCGGAGGAGTGGGAATCAGTGTCAGAGCCGTCGGCGACCTCAAGGAAGGGGACGTGGTGGCCAGAATACCAAAGCTGGCGTGCCTCACCATCAGAACCGCCGCCGCTGCTGCCGAACCTGAGGCTGCCGAGGCTTTGGAAAATGAGGAGGAGTTGGTCGGGCTGGCGGTGGCTCTGATGTACGAGAGGAGCCTGGGGGAGCGCTCCCGGTGGGCCCCGTACCTGGAGCTGTTGAGCGAAGAAGAGGCGGCGGCGTTGCCGTTGGTTTGGAGTGCCCAAGAGGTGGAGCGTCTACTGCAAGGGACAGAGCTGGAGGCGGCGACGGTCAAGGCAGAGAGGTCTGATATGAGGAAGCAGTGGAAGGAGAGCGTTGAGCCCTTGCTGCTCATGCTTCTTAATTCCAATTCCTCCAATTCATTCCAATTCCAGGACTACTTAGTAGCAAGGACATTCATTTCTTCTCGGTCTTTTCGGATTGATGATTACCACGGAATCGGAATGGTTCCTTTGGCTGACCTGTTTAATCACAAAACCGCAGCTGAGGATGTCCACTTGATGACCTCTCCTCAGAGTAGTCAATCTGACTCTGACACCCCCCAGCAAACCACAGAATCTGCTTCTGCTCCTTCTGATGCTTCCGGCGAGGAGGAGGAGGACGACGAGGACGAGGACGATGATGATTTGGAAATGACTATGGTGAAAGATGTCAAACTTGGAGCTGAGGTCTTCAATACATACGGGCCATTGGGTAACGCAGCCCTGCTTCACAGATACGGTTTTACAGAGCCTGATAATCCATATGACATTGTCAATATCGACTTGGAACTCATCCTCCGCTGGGGTTCCTCCTTCTCTGGCCAGCATCGTAGAGCAAGGGTATCCCTCTGGAGACGATTTCATTACTCTGGGTGTGTCACCCACGACTCTGAATATTTTGAGATTTCATTTCATGGACAACCCCAATTTGACATGTTGGTTTTATTGTACATAATGCTCTTAGCCGACGAAGAATACTATAAGTTGGATCTTGCTATTGCAACTGCTGGAGGAAGCTCCGATGAACCTATGCATGTCGACATCATTTTTCCAGACAAAAGCCAACAATTGCGCCACAATGCTGAAATGTTGACCGAGGAACTGTTGCTGACAAAATCTCTTTGTAATGCTCTTTCGTCCCTCGCAGATATGCGGGACAGCCTGTATGGTGCAAATTCATTAGAAGATGATATCAGAGCATTGGGTAGGTGTAGTTGCATAAGTGAGAAGAAGTTGTACCATTCTTTGGTGCTTCGTATCAGTGAGAGGAAGATCCTTCGGAAGCTTCAAATATATGCTGCTAATGCTAAAGAAGCCTCTTGGACGAACAAGTTGAAAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rubis-subs-bind SET

Protein Analysis

505

Amino Acids

56.36

Weight (kDa)

4.84

Isoelectric Point (pI)

59.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56570 AT3G56570
fragaria_vesca	FvH4_1g25860
malus_domestica	MD00G1030500.v1.1
prunus_persica	Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1 Prupe.4G288100_v2.0.a1
pyrus_communis	pycom520g01270
rosa_chinensis	RchiOBHm_Chr3g0485001
rosa_laevigata	RLG00000023178
rosa_multiflora	Rmu_sc0006040.1_g000023 Rmu_sc0008046.1_g000001 Rmu_sc0009462.1_g000004 Rmu_sc0013239.1_g000002 Rmu_sc0029923.1_g000001 Rmu_sc0034567.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397270
rosa_rugosa	Rorug03G0215100
rosa_samantha	Rh3AG265400 Rh3BG300900 Rh3BG301000 Rh3CG298800 Rh3CG299300 Rh3DG294700 Rh3DG295100
rosa_wichuraiana	Rw0G006750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	415, 1414
AccI	GTMKAC	2 cut(s)	424, 1206
AclWI	GGATC	2 cut(s)	1164, 1435
AcoI	YGGCCR	2 cut(s)	192, 988
AcsI	RAATTY	1 cut(s)	1342
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	314, 353, 1118, 1406
AfeI	AGCGCT	1 cut(s)	335
AfiI	CCNNNNNNNGG	5 cut(s)	355, 415, 559, 970, 1414
AflIII	ACRYGT	1 cut(s)	1101
AgsI	TTSAA	5 cut(s)	64, 92, 862, 1457, 1504
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	324, 354, 558
AloI	GAACNNNNNNTCC	2 cut(s)	948, 980
AluBI	AGCT	8 cut(s)	128, 208, 361, 442, 671, 851, 1185, 1453
AluI	AGCT	8 cut(s)	128, 208, 361, 442, 671, 851, 1185, 1453
Alw26I	GTCTC	1 cut(s)	1015
AlwI	GGATC	2 cut(s)	1164, 1435
AlwNI	CAGNNNCTG	2 cut(s)	746, 920
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	4 cut(s)	192, 345, 872, 988
ApaI	GGGCCC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	1342
AspLEI	GCGC	2 cut(s)	336, 1242
AspS9I	GGNCC	3 cut(s)	345, 346, 872
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	4 cut(s)	64, 211, 841, 1039
AxyI	CCTNAGG	1 cut(s)	252
BaeGI	GKGCMC	2 cut(s)	349, 409
BalI	TGGCCA	2 cut(s)	194, 990
BanII	GRGCYC	2 cut(s)	349, 510
BarI	GAAGNNNNNNTAC	2 cut(s)	1388, 1420
BbsI	GAAGAC	1 cut(s)	850
BbvCI	CCTCAGC	2 cut(s)	672, 852
BccI	CCATC	2 cut(s)	63, 230
BceAI	ACGGC	2 cut(s)	146, 376
BciT130I	CCWGG	3 cut(s)	326, 356, 560
BciVI	GTATCC	1 cut(s)	1021
BcnI	CCSGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	1015
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	1021
Bme1390I	CCNGG	4 cut(s)	326, 340, 356, 560
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	3 cut(s)	345, 346, 872
BmiI	GGNNCC	5 cut(s)	323, 347, 348, 636, 976
BmrFI	CCNGG	4 cut(s)	326, 340, 356, 560
BmsI	GCATC	2 cut(s)	754, 1003
BpiI	GAAGAC	1 cut(s)	850
BpmI	CTGGAG	4 cut(s)	377, 464, 1039, 1197
Bpu10I	CCTNAGC	2 cut(s)	672, 852
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	261, 325, 619, 1263
BsaXI	ACNNNNNCTCC	4 cut(s)	840, 870, 948, 978
Bsc4I	CCNNNNNNNGG	5 cut(s)	355, 415, 559, 970, 1414
Bse21I	CCTNAGG	1 cut(s)	252
BseBI	CCWGG	3 cut(s)	326, 356, 560
BseDI	CCNNGG	4 cut(s)	261, 325, 619, 1263
BseGI	GGATG	3 cut(s)	78, 682, 960
BseLI	CCNNNNNNNGG	5 cut(s)	355, 415, 559, 970, 1414
BseMII	CTCAG	4 cut(s)	243, 663, 713, 843
BseRI	GAGGAG	8 cut(s)	153, 293, 296, 334, 687, 791, 794, 797
BseSI	GKGCMC	2 cut(s)	349, 409
BseYI	CCCAGC	2 cut(s)	729, 969
BshFI	GGCC	4 cut(s)	194, 347, 874, 990
BsiSI	CCGG	3 cut(s)	135, 340, 771
BslFI	GGGAC	4 cut(s)	197, 448, 1291, 1337
BslI	CCNNNNNNNGG	5 cut(s)	355, 415, 559, 970, 1414
BsmAI	GTCTC	1 cut(s)	1015
BsmBI	CGTCTC	1 cut(s)	1015
BsmFI	GGGAC	4 cut(s)	197, 448, 1291, 1337
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	4 cut(s)	194, 347, 874, 990
Bsp120I	GGGCCC	1 cut(s)	345
Bsp1286I	GDGCHC	3 cut(s)	349, 409, 510
Bsp1407I	TGTACA	1 cut(s)	1116
Bsp143I	GATC	2 cut(s)	1156, 1440
BspANI	GGCC	4 cut(s)	194, 347, 874, 990
BspCNI	CTCAG	4 cut(s)	244, 664, 712, 844
BspLI	GGNNCC	5 cut(s)	323, 347, 348, 636, 976
BspPI	GGATC	2 cut(s)	1164, 1435
BsrGI	TGTACA	1 cut(s)	1116
BssECI	CCNNGG	4 cut(s)	261, 325, 619, 1263
BssMI	GATC	2 cut(s)	1156, 1440
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	3 cut(s)	326, 356, 560
Bst4CI	ACNGT	3 cut(s)	457, 908, 1272
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	1116
BstC8I	GCNNGC	5 cut(s)	47, 210, 214, 297, 992
BstDEI	CTNAG	6 cut(s)	252, 568, 672, 699, 852, 1129
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	3 cut(s)	78, 682, 960
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	336, 1242
BstKTI	GATC	2 cut(s)	1159, 1443
BstMAI	GTCTC	1 cut(s)	1015
BstMBI	GATC	2 cut(s)	1156, 1440
BstNI	CCWGG	3 cut(s)	326, 356, 560
BstNSI	RCATGY	2 cut(s)	1105, 1205
BstSCI	CCNGG	4 cut(s)	324, 338, 354, 558
BstSLI	GKGCMC	2 cut(s)	349, 409
BstV2I	GAAGAC	1 cut(s)	850
BstX2I	RGATCY	2 cut(s)	1156, 1440
BstYI	RGATCY	2 cut(s)	1156, 1440
Bsu36I	CCTNAGG	1 cut(s)	252
BsuI	GTATCC	1 cut(s)	1021
BsuRI	GGCC	4 cut(s)	194, 347, 874, 990
BtgI	CCRYGG	1 cut(s)	619
BtgZI	GCGATG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	78, 682, 960
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	3 cut(s)	157, 494, 1435
Cac8I	GCNNGC	5 cut(s)	47, 210, 214, 297, 992
CaiI	CAGNNNCTG	2 cut(s)	746, 920
CfoI	GCGC	2 cut(s)	336, 1242
Cfr13I	GGNCC	3 cut(s)	345, 346, 872
CseI	GACGC	2 cut(s)	110, 410
Csp6I	GTAC	4 cut(s)	313, 352, 1117, 1405
CviAII	CATG	4 cut(s)	520, 1082, 1102, 1202
CviQI	GTAC	4 cut(s)	313, 352, 1117, 1405
DdeI	CTNAG	6 cut(s)	252, 568, 672, 699, 852, 1129
DpnI	GATC	2 cut(s)	1158, 1442
DpnII	GATC	2 cut(s)	1156, 1440
EaeI	YGGCCR	2 cut(s)	192, 988
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco24I	GRGCYC	2 cut(s)	349, 510
Eco32I	GATATC	1 cut(s)	1360
Eco47III	AGCGCT	1 cut(s)	335
Eco81I	CCTNAGG	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	3 cut(s)	324, 354, 558
EcoRV	GATATC	1 cut(s)	1360
EcoT22I	ATGCAT	1 cut(s)	1203
EcoT38I	GRGCYC	2 cut(s)	349, 510
Esp3I	CGTCTC	1 cut(s)	1015
FaeI	CATG	4 cut(s)	523, 1085, 1105, 1205
FaqI	GGGAC	4 cut(s)	197, 448, 1291, 1337
FatI	CATG	4 cut(s)	519, 1081, 1101, 1201
FauI	CCCGC	2 cut(s)	42, 1314
FauNDI	CATATG	1 cut(s)	931
FblI	GTMKAC	2 cut(s)	424, 1206
FokI	GGATG	3 cut(s)	85, 689, 947
FriOI	GRGCYC	2 cut(s)	349, 510
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	335, 1241
GsaI	CCCAGC	2 cut(s)	733, 973
GsuI	CTGGAG	4 cut(s)	377, 464, 1039, 1197
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	4 cut(s)	194, 347, 874, 990
HapII	CCGG	3 cut(s)	135, 340, 771
HgaI	GACGC	2 cut(s)	110, 410
HhaI	GCGC	2 cut(s)	336, 1242
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	523, 1085, 1105, 1205
Hin6I	GCGC	2 cut(s)	334, 1240
HinP1I	GCGC	2 cut(s)	334, 1240
HincII	GTYRAC	2 cut(s)	1207, 1260
HindII	GTYRAC	2 cut(s)	1207, 1260
HindIII	AAGCTT	1 cut(s)	1451
HinfI	GANTC	5 cut(s)	147, 624, 716, 743, 1055
HpaII	CCGG	3 cut(s)	135, 340, 771
HphI	GGTGA	4 cut(s)	64, 211, 841, 1039
Hpy166II	GTNNAC	4 cut(s)	425, 682, 1207, 1260
Hpy188III	TCNNGA	2 cut(s)	1018, 1220
Hpy8I	GTNNAC	4 cut(s)	425, 682, 1207, 1260
Hpy99I	CGWCG	6 cut(s)	104, 125, 167, 457, 794, 1139
HpyAV	CCTTC	6 cut(s)	77, 173, 487, 768, 991, 1454
HpyCH4III	ACNGT	3 cut(s)	457, 908, 1272
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	96, 430, 1169, 1201, 1340, 1386
HpyF3I	CTNAG	6 cut(s)	252, 568, 672, 699, 852, 1129
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	523, 1085, 1105, 1205
HspAI	GCGC	2 cut(s)	334, 1240
Kzo9I	GATC	2 cut(s)	1156, 1440
LweI	GCATC	2 cut(s)	754, 1003
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	881, 1045
MalI	GATC	2 cut(s)	1158, 1442
MboI	GATC	2 cut(s)	1156, 1440
MboII	GAAGA	8 cut(s)	383, 386, 582, 850, 1151, 1364, 1408, 1450
MfeI	CAATTG	1 cut(s)	1235
MflI	RGATCY	2 cut(s)	1156, 1440
MhlI	GDGCHC	3 cut(s)	349, 409, 510
MlsI	TGGCCA	2 cut(s)	194, 990
MluCI	AATT	7 cut(s)	529, 535, 544, 554, 1094, 1235, 1342
MluNI	TGGCCA	2 cut(s)	194, 990
MlyI	GAGTC	2 cut(s)	710, 1049
MmeI	TCCRAC	1 cut(s)	1134
Mox20I	TGGCCA	2 cut(s)	194, 990
Mph1103I	ATGCAT	1 cut(s)	1203
MscI	TGGCCA	2 cut(s)	194, 990
MseI	TTAA	2 cut(s)	528, 654
Msp20I	TGGCCA	2 cut(s)	194, 990
MspA1I	CMGCKG	4 cut(s)	33, 239, 671, 969
MspI	CCGG	3 cut(s)	135, 340, 771
MspR9I	CCNGG	4 cut(s)	326, 340, 356, 560
MunI	CAATTG	1 cut(s)	1235
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	3 cut(s)	326, 356, 560
NciI	CCSGG	1 cut(s)	340
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	2 cut(s)	1156, 1440
NlaIII	CATG	4 cut(s)	523, 1085, 1105, 1205
NlaIV	GGNNCC	5 cut(s)	323, 347, 348, 636, 976
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	1045
NsiI	ATGCAT	1 cut(s)	1203
NspI	RCATGY	2 cut(s)	1105, 1205
PciI	ACATGT	1 cut(s)	1101
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	147, 624, 743
PflFI	GACNNNGTC	1 cut(s)	938
PflMI	CCANNNNNTGG	2 cut(s)	415, 1414
PfoI	TCCNGGA	1 cut(s)	558
PleI	GAGTC	2 cut(s)	710, 1049
PpsI	GAGTC	2 cut(s)	710, 1049
PscI	ACATGT	1 cut(s)	1101
Psp6I	CCWGG	3 cut(s)	324, 354, 558
PspFI	CCCAGC	2 cut(s)	729, 969
PspGI	CCWGG	3 cut(s)	324, 354, 558
PspN4I	GGNNCC	5 cut(s)	323, 347, 348, 636, 976
PspOMI	GGGCCC	1 cut(s)	345
PspPI	GGNCC	3 cut(s)	345, 346, 872
PstNI	CAGNNNCTG	2 cut(s)	746, 920
PsuI	RGATCY	2 cut(s)	1156, 1440
PsyI	GACNNNGTC	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	4 cut(s)	314, 353, 1118, 1406
RsaNI	GTAC	4 cut(s)	313, 352, 1117, 1405
SalI	GTCGAC	1 cut(s)	1205
SaqAI	TTAA	2 cut(s)	528, 654
Sau3AI	GATC	2 cut(s)	1156, 1440
Sau96I	GGNCC	3 cut(s)	345, 346, 872
SchI	GAGTC	2 cut(s)	710, 1049
ScrFI	CCNGG	4 cut(s)	326, 340, 356, 560
SduI	GDGCHC	3 cut(s)	349, 409, 510
SfaNI	GCATC	2 cut(s)	754, 1003
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	7 cut(s)	529, 535, 544, 554, 1094, 1235, 1342
SspI	AATATT	1 cut(s)	1064
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	4 cut(s)	324, 338, 354, 558
TaaI	ACNGT	3 cut(s)	457, 908, 1272
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	948, 1206
TaqII	GACCGA	2 cut(s)	585, 1277
TasI	AATT	7 cut(s)	529, 535, 544, 554, 1094, 1235, 1342
TatI	WGTACW	1 cut(s)	1116
TauI	GCSGC	7 cut(s)	24, 36, 236, 239, 383, 386, 452
TfiI	GAWTC	3 cut(s)	147, 624, 743
Tru1I	TTAA	2 cut(s)	528, 654
Tru9I	TTAA	2 cut(s)	528, 654
TscAI	CASTG	3 cut(s)	157, 494, 1435
TseFI	GTSAC	1 cut(s)	1045
Tsp45I	GTSAC	1 cut(s)	1045
TspDTI	ATGAA	8 cut(s)	89, 537, 574, 1019, 1065, 1070, 1206, 1335
TspGWI	ACGGA	2 cut(s)	138, 636
TspRI	CASTG	3 cut(s)	157, 494, 1435
Tth111I	GACNNNGTC	1 cut(s)	938
Van91I	CCANNNNNTGG	2 cut(s)	415, 1414
XapI	RAATTY	1 cut(s)	1342
XceI	RCATGY	2 cut(s)	1105, 1205
XmiI	GTMKAC	2 cut(s)	424, 1206
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.